Wall clock time and date at job start Tue Mar 31 2020 15:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46029 * 2 1 4 4 C 1.53037 * 109.45064 * 119.96372 * 2 1 3 5 5 C 1.53623 * 109.24245 * 58.52761 * 4 2 1 6 6 N 1.46924 * 108.54339 * 54.85490 * 5 4 2 7 7 C 1.34777 * 120.62816 * 126.36856 * 6 5 4 8 8 O 1.21582 * 119.99687 * 186.71629 * 7 6 5 9 9 C 1.47520 * 120.00338 * 6.71948 * 7 6 5 10 10 C 1.36779 * 126.92853 * 187.19559 * 9 7 6 11 11 C 1.41410 * 103.83829 * 179.97438 * 10 9 7 12 12 Cl 1.73599 * 126.72822 * 179.97438 * 11 10 9 13 13 N 1.30225 * 106.55005 * 359.97438 * 11 10 9 14 14 O 1.20883 * 111.96108 * 0.02562 * 13 11 10 15 15 C 1.46923 * 118.73793 * 306.09599 * 6 5 4 16 16 C 1.53045 * 109.46295 * 240.02698 * 2 1 3 17 17 H 1.09003 * 109.49664 * 181.40437 * 16 2 1 18 18 C 1.52999 * 109.52313 * 61.32486 * 16 2 1 19 19 N 1.46499 * 109.47252 * 175.14707 * 18 16 2 20 20 C 1.36936 * 120.00172 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99966 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99846 * 179.97438 * 20 19 18 23 23 N 1.31613 * 119.99852 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99630 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47344 * 90.00124 * 24 22 20 26 26 H 1.48503 * 109.47177 * 210.00277 * 24 22 20 27 27 H 1.48499 * 109.47429 * 329.99926 * 24 22 20 28 28 H 1.09002 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47527 * 299.97221 * 1 2 3 30 30 H 1.08997 * 109.47572 * 59.97586 * 1 2 3 31 31 H 1.09001 * 109.50016 * 178.60454 * 4 2 1 32 32 H 1.08997 * 109.50099 * 298.69931 * 4 2 1 33 33 H 1.08997 * 109.73878 * 295.12010 * 5 4 2 34 34 H 1.08999 * 109.66574 * 174.54825 * 5 4 2 35 35 H 1.08004 * 128.08379 * 0.02562 * 10 9 7 36 36 H 1.09003 * 109.58711 * 173.64306 * 15 6 5 37 37 H 1.08995 * 109.59074 * 294.06922 * 15 6 5 38 38 H 1.09011 * 109.46909 * 295.14794 * 18 16 2 39 39 H 1.09000 * 109.47529 * 55.14227 * 18 16 2 40 40 H 0.96999 * 119.99856 * 359.97438 * 19 18 16 41 41 H 0.97007 * 119.99343 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7207 1.2502 5 6 1.4942 -2.1568 1.2644 6 7 1.8621 -2.8089 0.0002 7 6 2.5150 -3.9879 0.0004 8 8 2.9216 -4.4578 -1.0447 9 6 2.7363 -4.7084 1.2685 10 6 3.4914 -5.8338 1.4533 11 6 3.3665 -6.1016 2.8362 12 17 4.0957 -7.4126 3.7098 13 7 2.5974 -5.1719 3.3261 14 8 2.2364 -4.3902 2.4776 15 6 1.4994 -2.1542 -1.2641 16 6 2.0399 -0.7209 -1.2500 17 1 3.1297 -0.7431 -1.2381 18 6 1.5579 0.0190 -2.4994 19 7 2.1409 -0.6030 -3.6908 20 6 1.8499 -0.1077 -4.9338 21 1 1.1908 0.7418 -5.0359 22 6 2.4028 -0.6968 -6.0626 23 7 3.2064 -1.7316 -5.9381 24 14 2.0063 -0.0206 -7.7581 25 1 2.9998 1.0221 -8.1201 26 1 2.0581 -1.1207 -8.7543 27 1 0.6457 0.5742 -7.7481 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5134 0.8902 30 1 -0.3634 0.5142 -0.8897 31 1 3.1293 -0.7429 1.2386 32 1 1.6955 -0.1934 2.1399 33 1 0.4088 -2.1374 1.3631 34 1 1.9293 -2.7062 2.0991 35 1 4.0526 -6.3881 0.7156 36 1 1.9380 -2.7019 -2.0982 37 1 0.4145 -2.1346 -1.3674 38 1 0.4706 -0.0347 -2.5567 39 1 1.8677 1.0627 -2.4459 40 1 2.7332 -1.3657 -3.5991 41 1 3.5925 -2.1435 -6.7270 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133253817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:41 Heat of formation + Delta-G solvation = 24.670673 kcal Electronic energy + Delta-G solvation = -26002.930939 eV Core-core repulsion = 22140.193165 eV Total energy + Delta-G solvation = -3862.737774 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.44425 -41.55993 -39.44740 -38.29439 -36.70030 -35.27121 -34.81392 -33.53338 -33.28284 -31.43055 -28.78525 -27.62527 -26.25188 -25.08360 -24.73363 -24.40190 -22.57957 -22.01737 -20.07338 -19.27921 -18.96042 -18.69299 -17.86328 -17.40246 -16.75905 -16.51194 -16.25169 -15.95498 -15.68390 -15.37874 -15.02982 -15.02346 -14.57068 -14.50845 -14.16554 -13.92105 -13.78700 -13.63567 -13.02091 -12.88413 -12.84655 -12.62266 -12.44234 -12.25783 -12.14985 -12.00990 -11.87884 -11.74593 -11.61189 -11.31483 -11.24610 -11.15408 -11.04265 -10.89792 -9.74686 -8.96605 -7.91731 -5.21274 -0.55833 0.22908 0.55130 1.15739 1.47816 1.49940 1.58365 1.67200 1.90556 2.57829 2.88873 3.33188 3.41530 3.45021 3.70598 3.72335 3.82331 3.86990 4.05003 4.20882 4.29245 4.42349 4.49280 4.54449 4.58930 4.71817 4.78516 4.83850 4.94058 5.02000 5.13575 5.18920 5.27708 5.32610 5.36835 5.44821 5.52432 5.64410 6.05950 6.29393 6.53200 6.76408 7.35305 8.12465 8.33767 9.31617 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.002911 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.530384 B = 9614.937448 C =11022.175255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 H 0.082 0.918 4 C -0.121 4.121 5 C 0.090 3.910 6 N -0.588 5.588 7 C 0.595 3.405 8 O -0.545 6.545 9 C -0.065 4.065 10 C -0.132 4.132 11 C 0.054 3.946 12 Cl 0.048 6.952 13 N -0.339 5.339 14 O 0.143 5.857 15 C 0.128 3.872 16 C -0.091 4.091 17 H 0.054 0.946 18 C 0.160 3.840 19 N -0.748 5.748 20 C -0.243 4.243 21 H 0.079 0.921 22 C -0.079 4.079 23 N -0.970 5.970 24 Si 0.973 3.027 25 H -0.288 1.288 26 H -0.298 1.298 27 H -0.267 1.267 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.206 0.794 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.034 0.966 39 H 0.024 0.976 40 H 0.371 0.629 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -4.177 24.562 25.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 H 0.101 0.899 4 C -0.159 4.159 5 C -0.031 4.031 6 N -0.319 5.319 7 C 0.380 3.620 8 O -0.423 6.423 9 C -0.130 4.130 10 C -0.155 4.155 11 C -0.129 4.129 12 Cl 0.076 6.924 13 N -0.042 5.042 14 O 0.069 5.931 15 C 0.006 3.994 16 C -0.111 4.111 17 H 0.072 0.928 18 C 0.033 3.967 19 N -0.391 5.391 20 C -0.374 4.374 21 H 0.097 0.903 22 C -0.271 4.271 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.215 1.215 26 H -0.225 1.225 27 H -0.191 1.191 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.223 0.777 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.203 0.797 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.891 -4.167 25.212 25.849 hybrid contribution 0.909 -0.685 -1.935 2.245 sum -2.982 -4.851 23.278 23.964 Atomic orbital electron populations 1.21982 0.93818 1.02319 1.02709 1.21077 0.97077 0.99446 0.92256 0.89929 1.22018 1.00831 0.94123 0.98955 1.22591 1.02707 0.94250 0.83534 1.48140 1.54782 1.19456 1.09508 1.16854 0.78828 0.81362 0.84950 1.90952 1.51524 1.68302 1.31545 1.23865 1.02343 0.99246 0.87558 1.22996 1.00900 0.96408 0.95147 1.24121 1.01163 0.96063 0.91553 1.98438 1.79074 1.40068 1.74838 1.73790 1.13259 1.02305 1.14842 1.85191 1.54926 1.40175 1.12840 1.21621 1.00470 0.92910 0.84386 1.21566 0.99683 0.93989 0.95859 0.92790 1.20869 0.96189 0.94814 0.84825 1.42683 1.57073 1.37392 1.01949 1.19646 1.22328 1.10480 0.84995 0.90336 1.25604 1.00687 0.99026 1.01747 1.69853 1.37332 1.25872 1.29067 0.85139 0.78147 0.76781 0.79687 1.21471 1.22482 1.19130 0.92336 0.90157 0.93091 0.92114 0.86875 0.87903 0.87935 0.77681 0.92111 0.89489 0.94823 0.95823 0.79682 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.11 71.98 0.58 -2.03 16 2 C -0.08 -1.60 2.71 -10.77 -0.03 -1.63 16 3 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 4 C -0.12 -1.87 5.64 30.82 0.17 -1.70 16 5 C 0.09 1.50 5.71 86.51 0.49 1.99 16 6 N -0.59 -15.03 2.97 -821.87 -2.44 -17.46 16 7 C 0.59 17.31 7.68 86.69 0.67 17.97 16 8 O -0.55 -21.04 16.35 -3.97 -0.06 -21.11 16 9 C -0.06 -1.46 6.90 24.38 0.17 -1.29 16 10 C -0.13 -2.67 10.97 22.71 0.25 -2.42 16 11 C 0.05 1.04 7.97 85.71 0.68 1.72 16 12 Cl 0.05 0.75 29.33 -2.72 -0.08 0.67 16 13 N -0.34 -6.95 12.05 -51.03 -0.61 -7.56 16 14 O 0.14 2.79 7.93 65.75 0.52 3.31 16 15 C 0.13 4.01 5.06 86.36 0.44 4.45 16 16 C -0.09 -2.76 2.15 -10.72 -0.02 -2.79 16 17 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 18 C 0.16 6.07 5.19 86.38 0.45 6.52 16 19 N -0.75 -38.34 5.38 -343.44 -1.85 -40.18 16 20 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 21 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 22 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 23 N -0.97 -61.44 13.06 21.65 0.28 -61.16 16 24 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 28 H 0.06 1.00 4.96 -2.39 -0.01 0.99 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.04 6.58 -2.39 -0.02 1.02 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.33 6.68 -2.39 -0.02 1.32 16 34 H 0.10 1.53 4.25 -13.42 -0.06 1.48 16 35 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.06 2.52 6.20 -2.39 -0.01 2.50 16 37 H 0.09 2.52 6.69 -2.39 -0.02 2.50 16 38 H 0.03 1.24 6.73 -2.38 -0.02 1.22 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.37 20.85 6.89 -92.71 -0.64 20.21 16 41 H 0.25 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -71.14 343.54 3.35 -67.79 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.40 Total: 22.97 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 5.16 Total: 3.85 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -4.62 Total: -126.37 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.46 Total: -17.80 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.08 Total: 0.67 kcal Total: -71.14 3.35 -67.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133253817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.460 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds