Wall clock time and date at job start Tue Mar 31 2020 15:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46552 * 2 1 4 4 C 1.53077 * 109.33343 * 240.11587 * 2 1 3 5 5 C 1.53196 * 109.29526 * 301.13402 * 4 2 1 6 6 N 1.46924 * 108.89394 * 305.58325 * 5 4 2 7 7 C 1.34781 * 120.62616 * 233.51307 * 6 5 4 8 8 O 1.21578 * 119.99354 * 173.04136 * 7 6 5 9 9 C 1.47513 * 120.00227 * 353.03695 * 7 6 5 10 10 C 1.36782 * 126.93210 * 172.74004 * 9 7 6 11 11 C 1.41408 * 103.84088 * 179.97438 * 10 9 7 12 12 Cl 1.73604 * 126.72545 * 179.97438 * 11 10 9 13 13 N 1.30222 * 106.54888 * 0.02562 * 11 10 9 14 14 O 1.20881 * 111.96268 * 359.72051 * 13 11 10 15 15 C 1.46920 * 118.74194 * 53.53557 * 6 5 4 16 16 C 1.53038 * 109.46133 * 119.97945 * 2 1 3 17 17 H 1.08996 * 109.50124 * 178.59063 * 16 2 1 18 18 C 1.53007 * 109.49574 * 298.68714 * 16 2 1 19 19 N 1.46498 * 109.47011 * 184.83922 * 18 16 2 20 20 C 1.36937 * 119.99817 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99985 * 359.97438 * 20 19 18 22 22 C 1.38819 * 119.99849 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00203 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99677 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47222 * 90.00053 * 24 22 20 26 26 H 1.48499 * 109.47391 * 209.99720 * 24 22 20 27 27 H 1.48497 * 109.47549 * 330.00350 * 24 22 20 28 28 H 1.09008 * 109.46539 * 300.02564 * 1 2 3 29 29 H 1.09000 * 109.47092 * 60.01743 * 1 2 3 30 30 H 1.08995 * 109.47725 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.38907 * 181.26409 * 4 2 1 32 32 H 1.08997 * 109.62152 * 61.15240 * 4 2 1 33 33 H 1.08997 * 109.58862 * 185.71619 * 5 4 2 34 34 H 1.09006 * 109.58004 * 65.44018 * 5 4 2 35 35 H 1.08005 * 128.07727 * 359.97438 * 10 9 7 36 36 H 1.09005 * 109.59128 * 66.17487 * 15 6 5 37 37 H 1.09002 * 109.58684 * 186.60514 * 15 6 5 38 38 H 1.08995 * 109.46958 * 304.83704 * 18 16 2 39 39 H 1.09000 * 109.47127 * 64.83567 * 18 16 2 40 40 H 0.96998 * 120.00355 * 359.97438 * 19 18 16 41 41 H 0.96993 * 120.00132 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0368 -0.7197 -1.2524 5 6 1.4989 -2.1541 -1.2645 6 7 1.8619 -2.8090 -0.0003 7 6 2.5147 -3.9881 -0.0006 8 8 2.9210 -4.4581 1.0445 9 6 2.7361 -4.7084 -1.2687 10 6 3.4921 -5.8331 -1.4539 11 6 3.3660 -6.1017 -2.8365 12 17 4.0965 -7.4118 -3.7105 13 7 2.5954 -5.1730 -3.3259 14 8 2.2306 -4.3941 -2.4765 15 6 1.4992 -2.1543 1.2640 16 6 2.0399 -0.7210 1.2499 17 1 3.1295 -0.7433 1.2380 18 6 1.5572 0.0191 2.4990 19 7 2.1397 -0.6027 3.6907 20 6 1.8480 -0.1072 4.9335 21 1 1.1888 0.7422 5.0351 22 6 2.3995 -0.6969 6.0628 23 7 3.2023 -1.7324 5.9390 24 14 2.0021 -0.0205 7.7580 25 1 0.7974 -0.7039 8.2938 26 1 3.1515 -0.2580 8.6678 27 1 1.7413 1.4382 7.6604 28 1 -0.3633 0.5143 0.8898 29 1 -0.3633 0.5136 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.1266 -0.7399 -1.2421 32 1 1.6905 -0.1938 -2.1421 33 1 1.9373 -2.7017 -2.0988 34 1 0.4140 -2.1365 -1.3687 35 1 4.0541 -6.3869 -0.7163 36 1 0.4142 -2.1346 1.3673 37 1 1.9378 -2.7021 2.0981 38 1 1.8672 1.0627 2.4454 39 1 0.4700 -0.0344 2.5557 40 1 2.7314 -1.3659 3.5995 41 1 3.5874 -2.1446 6.7281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133253818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:44 Heat of formation + Delta-G solvation = 44.997928 kcal Electronic energy + Delta-G solvation = -26001.675434 eV Core-core repulsion = 22139.819115 eV Total energy + Delta-G solvation = -3861.856318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.57313 -40.45960 -38.29098 -37.53402 -35.15200 -34.18140 -33.64077 -32.45212 -31.83768 -29.86939 -27.81242 -26.17035 -25.09679 -24.03406 -23.44679 -23.17614 -21.29004 -20.96316 -18.89452 -18.37603 -17.71750 -17.10761 -16.85909 -16.25357 -15.48401 -15.22009 -15.01251 -14.99671 -14.29417 -14.17714 -13.88334 -13.60230 -13.45083 -13.16558 -13.03922 -12.82730 -12.71626 -12.48268 -11.91590 -11.71370 -11.50753 -11.28491 -11.11473 -10.92626 -10.81934 -10.71822 -10.46361 -10.43322 -10.28473 -10.20614 -10.14826 -9.91814 -9.61316 -8.85650 -8.66268 -6.89406 -5.72247 -3.02007 0.37890 1.01820 1.40903 2.15977 2.73241 2.91696 3.45803 3.50639 3.52693 3.77669 4.21948 4.32598 4.58391 4.60345 4.72311 4.80201 4.86440 5.09969 5.20041 5.29822 5.40224 5.46972 5.58490 5.63083 5.67769 5.75911 5.82379 5.89296 5.99670 6.06048 6.27868 6.30081 6.30581 6.43880 6.52827 6.73894 6.85661 7.12226 7.43887 7.72654 7.83336 8.45545 9.56691 10.14118 10.48118 11.50024 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.002911 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.312136 B = 9616.068974 C =11023.067870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.095 3.905 6 N -0.593 5.593 7 C 0.596 3.404 8 O -0.494 6.494 9 C -0.058 4.058 10 C -0.140 4.140 11 C 0.055 3.945 12 Cl 0.031 6.969 13 N -0.334 5.334 14 O 0.132 5.868 15 C 0.119 3.881 16 C -0.103 4.103 17 H 0.076 0.924 18 C 0.161 3.839 19 N -0.734 5.734 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.195 0.805 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.022 0.978 39 H 0.024 0.976 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 -5.141 -22.226 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.166 4.166 5 C -0.028 4.028 6 N -0.325 5.325 7 C 0.379 3.621 8 O -0.368 6.368 9 C -0.124 4.124 10 C -0.163 4.163 11 C -0.128 4.128 12 Cl 0.059 6.941 13 N -0.038 5.038 14 O 0.059 5.941 15 C -0.001 4.001 16 C -0.122 4.122 17 H 0.094 0.906 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.212 0.788 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.517 -5.171 -22.803 23.517 hybrid contribution 0.515 -0.400 1.328 1.480 sum -2.002 -5.571 -21.475 22.276 Atomic orbital electron populations 1.22004 0.95117 1.02022 1.01979 1.21102 0.96124 0.99562 0.93694 0.90554 1.21949 1.01297 0.94551 0.98779 1.22165 1.01267 0.94185 0.85183 1.48087 1.55645 1.19762 1.09035 1.16606 0.79480 0.81274 0.84691 1.90975 1.49284 1.67009 1.29498 1.24403 1.00999 0.98902 0.88059 1.22783 1.01830 0.96943 0.94735 1.24033 1.01449 0.95777 0.91563 1.98428 1.79386 1.41048 1.75256 1.73816 1.13081 1.02102 1.14771 1.85202 1.54771 1.40633 1.13502 1.21942 1.00442 0.93284 0.84470 1.21705 1.01088 0.94012 0.95405 0.90562 1.20681 0.96054 0.94791 0.85209 1.42422 1.57077 1.37539 1.00802 1.19189 1.23423 1.10971 0.83738 0.91235 1.24752 1.00002 0.98304 0.97816 1.69664 1.35498 1.24055 1.28537 0.86215 0.77266 0.78195 0.84630 1.21742 1.21812 1.20829 0.91674 0.92993 0.92439 0.91390 0.90373 0.89118 0.90168 0.78754 0.90490 0.87463 0.96022 0.95821 0.78114 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.11 37.16 0.30 -1.27 16 2 C -0.09 -0.96 2.71 -90.56 -0.25 -1.21 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.18 5.63 -26.59 -0.15 -1.33 16 5 C 0.09 0.91 5.66 -3.71 -0.02 0.89 16 6 N -0.59 -7.66 2.97 -174.00 -0.52 -8.18 16 7 C 0.60 8.49 7.68 -12.48 -0.10 8.40 16 8 O -0.49 -8.97 16.34 5.30 0.09 -8.89 16 9 C -0.06 -0.68 6.89 -36.33 -0.25 -0.93 16 10 C -0.14 -1.48 10.97 -38.90 -0.43 -1.91 16 11 C 0.06 0.58 7.97 -17.03 -0.14 0.44 16 12 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 13 N -0.33 -3.76 12.05 32.82 0.40 -3.36 16 14 O 0.13 1.41 7.94 15.52 0.12 1.54 16 15 C 0.12 1.82 5.06 -3.71 -0.02 1.80 16 16 C -0.10 -1.54 2.16 -90.49 -0.20 -1.74 16 17 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 18 C 0.16 3.04 5.19 -4.04 -0.02 3.02 16 19 N -0.73 -18.23 5.38 -59.91 -0.32 -18.55 16 20 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H 0.06 0.74 6.57 -51.92 -0.34 0.40 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.58 4.98 -51.93 -0.26 0.32 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.81 4.28 -52.51 -0.22 0.58 16 34 H 0.08 0.67 6.70 -51.93 -0.35 0.33 16 35 H 0.20 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.08 1.11 6.69 -51.93 -0.35 0.77 16 37 H 0.11 2.06 6.20 -51.93 -0.32 1.74 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.45 6.72 -51.93 -0.35 0.10 16 40 H 0.38 10.23 6.89 -40.82 -0.28 9.95 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -31.72 343.55 -7.36 -39.08 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.98 Total: 5.83 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.50 Total: -1.16 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.28 Total: -57.76 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.21 Total: -7.35 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.72 -7.36 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133253818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.074 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds