Wall clock time and date at job start Tue Mar 31 2020 15:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46552 * 2 1 4 4 C 1.53077 * 109.33343 * 240.11587 * 2 1 3 5 5 C 1.53196 * 109.29526 * 301.13402 * 4 2 1 6 6 N 1.46924 * 108.89394 * 305.58325 * 5 4 2 7 7 C 1.34781 * 120.62616 * 233.51307 * 6 5 4 8 8 O 1.21578 * 119.99354 * 173.04136 * 7 6 5 9 9 C 1.47513 * 120.00227 * 353.03695 * 7 6 5 10 10 C 1.36782 * 126.93210 * 172.74004 * 9 7 6 11 11 C 1.41408 * 103.84088 * 179.97438 * 10 9 7 12 12 Cl 1.73604 * 126.72545 * 179.97438 * 11 10 9 13 13 N 1.30222 * 106.54888 * 0.02562 * 11 10 9 14 14 O 1.20881 * 111.96268 * 359.72051 * 13 11 10 15 15 C 1.46920 * 118.74194 * 53.53557 * 6 5 4 16 16 C 1.53038 * 109.46133 * 119.97945 * 2 1 3 17 17 H 1.08996 * 109.50124 * 178.59063 * 16 2 1 18 18 C 1.53007 * 109.49574 * 298.68714 * 16 2 1 19 19 N 1.46498 * 109.47011 * 184.83922 * 18 16 2 20 20 C 1.36937 * 119.99817 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99985 * 359.97438 * 20 19 18 22 22 C 1.38819 * 119.99849 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00203 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99677 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47222 * 90.00053 * 24 22 20 26 26 H 1.48499 * 109.47391 * 209.99720 * 24 22 20 27 27 H 1.48497 * 109.47549 * 330.00350 * 24 22 20 28 28 H 1.09008 * 109.46539 * 300.02564 * 1 2 3 29 29 H 1.09000 * 109.47092 * 60.01743 * 1 2 3 30 30 H 1.08995 * 109.47725 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.38907 * 181.26409 * 4 2 1 32 32 H 1.08997 * 109.62152 * 61.15240 * 4 2 1 33 33 H 1.08997 * 109.58862 * 185.71619 * 5 4 2 34 34 H 1.09006 * 109.58004 * 65.44018 * 5 4 2 35 35 H 1.08005 * 128.07727 * 359.97438 * 10 9 7 36 36 H 1.09005 * 109.59128 * 66.17487 * 15 6 5 37 37 H 1.09002 * 109.58684 * 186.60514 * 15 6 5 38 38 H 1.08995 * 109.46958 * 304.83704 * 18 16 2 39 39 H 1.09000 * 109.47127 * 64.83567 * 18 16 2 40 40 H 0.96998 * 120.00355 * 359.97438 * 19 18 16 41 41 H 0.96993 * 120.00132 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0368 -0.7197 -1.2524 5 6 1.4989 -2.1541 -1.2645 6 7 1.8619 -2.8090 -0.0003 7 6 2.5147 -3.9881 -0.0006 8 8 2.9210 -4.4581 1.0445 9 6 2.7361 -4.7084 -1.2687 10 6 3.4921 -5.8331 -1.4539 11 6 3.3660 -6.1017 -2.8365 12 17 4.0965 -7.4118 -3.7105 13 7 2.5954 -5.1730 -3.3259 14 8 2.2306 -4.3941 -2.4765 15 6 1.4992 -2.1543 1.2640 16 6 2.0399 -0.7210 1.2499 17 1 3.1295 -0.7433 1.2380 18 6 1.5572 0.0191 2.4990 19 7 2.1397 -0.6027 3.6907 20 6 1.8480 -0.1072 4.9335 21 1 1.1888 0.7422 5.0351 22 6 2.3995 -0.6969 6.0628 23 7 3.2023 -1.7324 5.9390 24 14 2.0021 -0.0205 7.7580 25 1 0.7974 -0.7039 8.2938 26 1 3.1515 -0.2580 8.6678 27 1 1.7413 1.4382 7.6604 28 1 -0.3633 0.5143 0.8898 29 1 -0.3633 0.5136 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.1266 -0.7399 -1.2421 32 1 1.6905 -0.1938 -2.1421 33 1 1.9373 -2.7017 -2.0988 34 1 0.4140 -2.1365 -1.3687 35 1 4.0541 -6.3869 -0.7163 36 1 0.4142 -2.1346 1.3673 37 1 1.9378 -2.7021 2.0981 38 1 1.8672 1.0627 2.4454 39 1 0.4700 -0.0344 2.5557 40 1 2.7314 -1.3659 3.5995 41 1 3.5874 -2.1446 6.7281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133253818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:44 Heat of formation + Delta-G solvation = 24.420957 kcal Electronic energy + Delta-G solvation = -26002.567718 eV Core-core repulsion = 22139.819115 eV Total energy + Delta-G solvation = -3862.748603 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.44476 -41.56417 -39.45203 -38.29435 -36.70321 -35.26961 -34.81454 -33.54200 -33.28356 -31.44450 -28.79468 -27.62600 -26.24411 -25.08061 -24.73318 -24.40370 -22.58498 -22.01516 -20.07492 -19.28161 -18.96148 -18.68926 -17.85906 -17.40276 -16.75958 -16.51273 -16.25503 -15.95653 -15.68688 -15.37900 -15.02930 -15.02582 -14.57180 -14.51480 -14.17062 -13.92126 -13.78459 -13.63542 -13.02987 -12.87996 -12.83315 -12.63507 -12.46542 -12.26075 -12.12495 -12.00934 -11.87871 -11.74538 -11.61471 -11.31516 -11.24564 -11.15882 -11.03996 -10.89557 -9.74878 -8.96609 -7.91699 -5.21268 -0.55882 0.22858 0.55105 1.15749 1.47821 1.49972 1.58322 1.66751 1.90800 2.57825 2.88829 3.33420 3.41513 3.44990 3.70525 3.72308 3.82030 3.87043 4.05452 4.20865 4.29045 4.42282 4.49258 4.54909 4.59027 4.71760 4.78437 4.83763 4.94029 5.02041 5.13524 5.18905 5.27647 5.32523 5.36782 5.44901 5.52427 5.64344 6.05935 6.29412 6.53082 6.76281 7.35309 8.12470 8.33765 9.31659 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.002911 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.312136 B = 9616.068974 C =11023.067870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 H 0.082 0.918 4 C -0.122 4.122 5 C 0.090 3.910 6 N -0.588 5.588 7 C 0.595 3.405 8 O -0.545 6.545 9 C -0.065 4.065 10 C -0.132 4.132 11 C 0.054 3.946 12 Cl 0.048 6.952 13 N -0.339 5.339 14 O 0.143 5.857 15 C 0.128 3.872 16 C -0.091 4.091 17 H 0.054 0.946 18 C 0.160 3.840 19 N -0.748 5.748 20 C -0.243 4.243 21 H 0.079 0.921 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.973 3.027 25 H -0.287 1.287 26 H -0.298 1.298 27 H -0.267 1.267 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.206 0.794 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.034 0.966 40 H 0.371 0.629 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 -4.134 -24.570 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 H 0.101 0.899 4 C -0.159 4.159 5 C -0.031 4.031 6 N -0.319 5.319 7 C 0.380 3.620 8 O -0.423 6.423 9 C -0.130 4.130 10 C -0.155 4.155 11 C -0.129 4.129 12 Cl 0.076 6.924 13 N -0.042 5.042 14 O 0.069 5.931 15 C 0.006 3.994 16 C -0.111 4.111 17 H 0.072 0.928 18 C 0.033 3.967 19 N -0.391 5.391 20 C -0.375 4.375 21 H 0.097 0.903 22 C -0.271 4.271 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.214 1.214 26 H -0.225 1.225 27 H -0.192 1.192 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.223 0.777 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.203 0.797 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.800 -4.114 -25.222 25.836 hybrid contribution 0.882 -0.705 1.936 2.241 sum -2.918 -4.819 -23.285 23.957 Atomic orbital electron populations 1.21986 0.93834 1.02313 1.02707 1.21081 0.97079 0.99454 0.92245 0.89923 1.21955 1.00895 0.94136 0.98960 1.22482 1.02786 0.94268 0.83534 1.48133 1.54852 1.19397 1.09489 1.16848 0.78793 0.81385 0.84950 1.90951 1.51488 1.68325 1.31545 1.23862 1.02232 0.99303 0.87615 1.22997 1.00969 0.96327 0.95157 1.24120 1.01208 0.96034 0.91540 1.98438 1.79025 1.40133 1.74819 1.73788 1.13261 1.02361 1.14773 1.85192 1.54564 1.40498 1.12876 1.21624 1.00471 0.92913 0.84390 1.21563 0.99684 0.93983 0.95860 0.92781 1.20868 0.96191 0.94816 0.84815 1.42682 1.57107 1.37368 1.01942 1.19646 1.22304 1.10511 0.84990 0.90337 1.25605 1.00661 0.99052 1.01739 1.69847 1.37355 1.25874 1.29052 0.85139 0.76588 0.78232 0.79794 1.21426 1.22477 1.19185 0.93098 0.90156 0.92344 0.92151 0.86795 0.87975 0.87956 0.77678 0.89492 0.92112 0.95821 0.94818 0.79680 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.11 71.98 0.58 -2.03 16 2 C -0.08 -1.60 2.71 -10.76 -0.03 -1.63 16 3 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.12 -1.87 5.63 30.69 0.17 -1.70 16 5 C 0.09 1.50 5.66 86.36 0.49 1.99 16 6 N -0.59 -15.03 2.97 -822.68 -2.45 -17.48 16 7 C 0.60 17.31 7.68 86.69 0.67 17.98 16 8 O -0.55 -21.04 16.34 -3.96 -0.06 -21.10 16 9 C -0.06 -1.46 6.89 24.38 0.17 -1.29 16 10 C -0.13 -2.67 10.97 22.71 0.25 -2.42 16 11 C 0.05 1.04 7.97 85.71 0.68 1.72 16 12 Cl 0.05 0.75 29.33 -2.72 -0.08 0.67 16 13 N -0.34 -6.95 12.05 -51.03 -0.61 -7.56 16 14 O 0.14 2.79 7.94 65.72 0.52 3.31 16 15 C 0.13 4.01 5.06 86.37 0.44 4.45 16 16 C -0.09 -2.76 2.16 -10.71 -0.02 -2.78 16 17 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 18 C 0.16 6.07 5.19 86.38 0.45 6.52 16 19 N -0.75 -38.34 5.38 -343.44 -1.85 -40.18 16 20 C -0.24 -13.65 9.99 84.04 0.84 -12.81 16 21 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 22 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 23 N -0.97 -61.44 13.06 21.65 0.28 -61.16 16 24 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 H 0.05 1.03 6.57 -2.38 -0.02 1.02 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.00 4.98 -2.39 -0.01 0.99 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 1.53 4.28 -11.51 -0.05 1.48 16 34 H 0.10 1.33 6.70 -2.38 -0.02 1.31 16 35 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.09 2.52 6.69 -2.38 -0.02 2.50 16 37 H 0.06 2.52 6.20 -2.39 -0.01 2.50 16 38 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.03 1.24 6.72 -2.39 -0.02 1.22 16 40 H 0.37 20.85 6.89 -92.71 -0.64 20.21 16 41 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -71.12 343.55 3.34 -67.78 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.41 Total: 22.97 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 5.15 Total: 3.86 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -4.63 Total: -126.38 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.46 Total: -17.79 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.08 Total: 0.67 kcal Total: -71.12 3.34 -67.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133253818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.203 kcal (2) G-P(sol) polarization free energy of solvation -71.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds