Wall clock time and date at job start Tue Mar 31 2020 15:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21303 * 119.99878 * 2 1 4 4 C 1.46743 * 119.99534 * 180.02562 * 2 1 3 5 5 C 1.40010 * 120.22220 * 354.11873 * 4 2 1 6 6 C 1.37890 * 119.86832 * 179.74167 * 5 4 2 7 7 F 1.35097 * 119.83753 * 180.25250 * 6 5 4 8 8 C 1.38844 * 120.32420 * 0.54019 * 6 5 4 9 9 C 1.37993 * 120.45177 * 359.71483 * 8 6 5 10 10 C 1.38868 * 120.12042 * 0.02628 * 9 8 6 11 11 N 1.39088 * 120.16251 * 179.97438 * 10 9 8 12 12 C 1.34779 * 119.99920 * 325.49825 * 11 10 9 13 13 O 1.21594 * 119.99747 * 5.25782 * 12 11 10 14 14 C 1.47579 * 120.00019 * 185.25900 * 12 11 10 15 15 C 1.40043 * 119.89472 * 359.73055 * 14 12 11 16 16 C 1.36308 * 120.09817 * 179.71540 * 15 14 12 17 17 C 1.40903 * 119.89505 * 0.55493 * 16 15 14 18 18 C 1.41080 * 120.09803 * 179.70077 * 17 16 15 19 19 H 1.08004 * 119.99350 * 208.80113 * 18 17 16 20 20 C 1.40232 * 120.00367 * 28.79652 * 18 17 16 21 21 N 1.30644 * 120.00253 * 10.99399 * 20 18 17 22 22 Si 1.86801 * 119.99977 * 190.99517 * 20 18 17 23 23 H 1.48496 * 109.47205 * 60.00265 * 22 20 18 24 24 H 1.48501 * 109.47067 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47234 * 300.00102 * 22 20 18 26 26 C 1.40895 * 119.79731 * 359.71416 * 17 16 15 27 27 C 1.36300 * 119.89438 * 0.02562 * 26 17 16 28 28 H 1.08994 * 109.47024 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47203 * 300.00021 * 1 2 3 30 30 H 1.09010 * 109.46823 * 59.99424 * 1 2 3 31 31 H 1.07994 * 120.06908 * 359.97438 * 5 4 2 32 32 H 1.07996 * 119.77375 * 179.69431 * 8 6 5 33 33 H 1.08002 * 119.93716 * 180.02562 * 9 8 6 34 34 H 0.97004 * 120.00340 * 145.49903 * 11 10 9 35 35 H 1.07998 * 119.95083 * 359.97438 * 15 14 12 36 36 H 1.07998 * 120.04585 * 180.24646 * 16 15 14 37 37 H 0.96997 * 120.00128 * 180.02562 * 21 20 18 38 38 H 1.08005 * 120.05457 * 179.97438 * 26 17 16 39 39 H 1.08006 * 119.94522 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2407 -1.2709 -0.0006 5 6 1.5507 -2.4829 0.1229 6 6 2.2469 -3.6732 0.1161 7 9 1.5801 -4.8426 0.2301 8 6 3.6304 -3.6754 -0.0013 9 6 4.3243 -2.4884 -0.1184 10 6 3.6414 -1.2792 -0.1191 11 7 4.3400 -0.0822 -0.2366 12 6 5.5622 0.0420 0.3179 13 8 6.0946 -0.9198 0.8375 14 6 6.2541 1.3453 0.2944 15 6 5.6412 2.4502 -0.3096 16 6 6.2741 3.6573 -0.3286 17 6 7.5518 3.7895 0.2504 18 6 8.2134 5.0353 0.2276 19 1 9.2928 5.0735 0.2217 20 6 7.4697 6.2241 0.2126 21 7 6.1828 6.1924 0.4351 22 14 8.3192 7.8530 -0.1258 23 1 8.9548 7.8106 -1.4671 24 1 7.3192 8.9502 -0.0870 25 1 9.3586 8.0932 0.9072 26 6 8.1668 2.6737 0.8519 27 6 7.5241 1.4719 0.8708 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5140 -0.8900 31 1 0.4751 -2.4859 0.2194 32 1 4.1671 -4.6125 -0.0007 33 1 5.4004 -2.4998 -0.2097 34 1 3.9476 0.6632 -0.7175 35 1 4.6639 2.3467 -0.7574 36 1 5.7989 4.5097 -0.7911 37 1 5.6683 7.0146 0.4243 38 1 9.1463 2.7702 1.2966 39 1 7.9950 0.6158 1.3313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133970680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:45 Heat of formation + Delta-G solvation = -69.446068 kcal Electronic energy + Delta-G solvation = -26244.186271 eV Core-core repulsion = 22224.047082 eV Total energy + Delta-G solvation = -4020.139189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.95193 -40.77381 -39.08844 -37.97000 -37.09135 -34.38818 -33.91255 -32.31877 -30.60923 -29.55466 -29.51096 -28.87455 -25.97655 -24.27183 -23.17525 -21.68901 -20.98377 -20.33871 -19.74497 -17.87963 -17.57451 -17.51045 -16.88283 -16.13990 -15.70608 -15.49801 -15.40033 -15.05555 -14.85198 -14.53291 -14.29306 -14.12329 -14.02096 -13.31704 -13.08046 -13.04261 -12.78600 -12.55580 -12.32408 -12.16516 -12.11067 -11.94888 -11.66738 -11.48388 -11.29176 -11.03684 -10.69861 -10.25596 -10.10346 -9.73946 -9.59188 -9.46864 -9.33921 -9.05853 -8.03679 -7.77055 -7.55606 -7.02610 -4.67644 0.41255 1.05216 2.10617 2.23692 2.89932 2.92714 2.95335 2.99122 3.40833 3.45269 3.71578 3.81582 3.81867 4.18004 4.46475 4.51642 4.70367 4.92635 5.13210 5.20765 5.22323 5.34096 5.49323 5.54628 5.72677 5.79625 5.89091 6.02382 6.14580 6.19666 6.24084 6.48603 6.72791 6.78551 6.90300 7.00112 7.06898 7.37016 7.40722 7.54785 7.70481 7.80696 7.97172 8.01841 8.35480 8.57481 8.68548 8.75434 9.88309 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.002818 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.952424 B = 9932.966545 C =11101.173540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.395 3.605 3 O -0.449 6.449 4 C -0.194 4.194 5 C -0.089 4.089 6 C 0.052 3.948 7 F -0.143 7.143 8 C -0.098 4.098 9 C -0.116 4.116 10 C 0.223 3.777 11 N -0.667 5.667 12 C 0.571 3.429 13 O -0.556 6.556 14 C -0.285 4.285 15 C -0.059 4.059 16 C -0.171 4.171 17 C 0.131 3.869 18 C -0.440 4.440 19 H 0.085 0.915 20 C 0.071 3.929 21 N -0.774 5.774 22 Si 0.918 3.082 23 H -0.261 1.261 24 H -0.275 1.275 25 H -0.262 1.262 26 C -0.236 4.236 27 C -0.019 4.019 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.160 0.840 34 H 0.420 0.580 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.288 0.712 38 H 0.100 0.900 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.568 -10.527 -3.181 15.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.274 3.726 3 O -0.325 6.325 4 C -0.199 4.199 5 C -0.108 4.108 6 C 0.032 3.968 7 F -0.121 7.121 8 C -0.118 4.118 9 C -0.136 4.136 10 C 0.122 3.878 11 N -0.314 5.314 12 C 0.370 3.630 13 O -0.437 6.437 14 C -0.290 4.290 15 C -0.078 4.078 16 C -0.191 4.191 17 C 0.128 3.872 18 C -0.467 4.467 19 H 0.103 0.897 20 C -0.150 4.150 21 N -0.398 5.398 22 Si 0.742 3.258 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.186 1.186 26 C -0.255 4.255 27 C -0.039 4.039 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.177 0.823 34 H 0.263 0.737 35 H 0.111 0.889 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.066 -10.384 -2.779 14.726 hybrid contribution -0.227 0.781 -0.176 0.832 sum -10.293 -9.603 -2.955 14.383 Atomic orbital electron populations 1.22207 0.93465 1.04640 1.05175 1.22256 0.91811 0.87137 0.71438 1.90538 1.71476 1.34047 1.36431 1.20141 0.92785 0.95138 1.11821 1.21169 1.00541 0.89893 0.99185 1.17427 0.90338 0.81246 1.07792 1.91487 1.80643 1.45960 1.94042 1.21297 0.92096 0.99725 0.98673 1.21394 1.02359 0.89382 1.00473 1.18096 0.89640 0.87397 0.92625 1.43868 1.18855 1.13877 1.54788 1.18846 0.78962 0.89574 0.75667 1.90616 1.65827 1.40562 1.46691 1.18734 0.99134 0.91735 1.19374 1.20561 0.97020 0.93156 0.97081 1.21036 0.97607 0.96072 1.04343 1.17837 0.91485 0.92194 0.85691 1.19847 0.95134 0.90130 1.41625 0.89675 1.26119 0.94788 1.02048 0.92068 1.69706 1.07478 1.31101 1.31491 0.86190 0.79899 0.79375 0.80380 1.18504 1.20009 1.18647 1.20759 1.01755 0.93949 1.09070 1.20353 0.92509 0.96472 0.94517 0.89945 0.88620 0.88580 0.83615 0.84156 0.82278 0.73685 0.88911 0.85860 0.90092 0.88153 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 10.19 36.01 0.37 -1.20 16 2 C 0.39 5.00 7.19 -30.87 -0.22 4.78 16 3 O -0.45 -7.40 14.72 5.54 0.08 -7.32 16 4 C -0.19 -2.54 5.88 -104.91 -0.62 -3.16 16 5 C -0.09 -0.94 9.39 -39.05 -0.37 -1.30 16 6 C 0.05 0.60 7.28 -39.48 -0.29 0.31 16 7 F -0.14 -1.61 17.26 2.25 0.04 -1.57 16 8 C -0.10 -1.18 10.00 -39.45 -0.39 -1.57 16 9 C -0.12 -1.70 8.68 -39.44 -0.34 -2.04 16 10 C 0.22 3.52 6.32 -83.45 -0.53 2.99 16 11 N -0.67 -12.07 4.51 -10.57 -0.05 -12.12 16 12 C 0.57 12.08 7.61 -12.45 -0.09 11.98 16 13 O -0.56 -12.35 13.69 5.28 0.07 -12.28 16 14 C -0.29 -6.52 5.89 -104.73 -0.62 -7.14 16 15 C -0.06 -1.34 9.47 -39.60 -0.37 -1.72 16 16 C -0.17 -4.23 8.60 -39.27 -0.34 -4.57 16 17 C 0.13 3.32 5.55 -106.81 -0.59 2.72 16 18 C -0.44 -10.82 9.05 -37.76 -0.34 -11.16 16 19 H 0.09 1.98 7.87 -52.48 -0.41 1.57 16 20 C 0.07 1.64 5.25 -17.31 -0.09 1.55 16 21 N -0.77 -18.66 10.84 55.56 0.60 -18.06 16 22 Si 0.92 17.22 29.58 -169.99 -5.03 12.19 16 23 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 24 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 25 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 26 C -0.24 -5.62 9.73 -39.27 -0.38 -6.00 16 27 C -0.02 -0.45 9.52 -39.60 -0.38 -0.82 16 28 H 0.08 0.46 5.64 -51.93 -0.29 0.17 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.15 1.06 5.98 -52.49 -0.31 0.75 16 32 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.16 2.56 6.14 -52.49 -0.32 2.23 16 34 H 0.42 7.41 4.55 -40.82 -0.19 7.23 16 35 H 0.09 1.91 6.38 -52.49 -0.34 1.58 16 36 H 0.12 3.10 6.21 -52.49 -0.33 2.77 16 37 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 38 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 39 H 0.10 2.25 7.63 -52.48 -0.40 1.85 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -28.46 338.64 -8.19 -36.65 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -3.41 Total: 13.76 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -5.60 Total: -16.36 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.55 Total: -30.18 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.15 Total: -19.60 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.46 -8.19 -36.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133970680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.796 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds