Wall clock time and date at job start Tue Mar 31 2020 15:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21303 * 119.99878 * 2 1 4 4 C 1.46743 * 119.99534 * 180.02562 * 2 1 3 5 5 C 1.40010 * 120.22220 * 354.11873 * 4 2 1 6 6 C 1.37890 * 119.86832 * 179.74167 * 5 4 2 7 7 F 1.35097 * 119.83753 * 180.25250 * 6 5 4 8 8 C 1.38844 * 120.32420 * 0.54019 * 6 5 4 9 9 C 1.37993 * 120.45177 * 359.71483 * 8 6 5 10 10 C 1.38868 * 120.12042 * 0.02628 * 9 8 6 11 11 N 1.39088 * 120.16251 * 179.97438 * 10 9 8 12 12 C 1.34779 * 119.99920 * 325.49825 * 11 10 9 13 13 O 1.21594 * 119.99747 * 5.25782 * 12 11 10 14 14 C 1.47579 * 120.00019 * 185.25900 * 12 11 10 15 15 C 1.40043 * 119.89472 * 359.73055 * 14 12 11 16 16 C 1.36308 * 120.09817 * 179.71540 * 15 14 12 17 17 C 1.40903 * 119.89505 * 0.55493 * 16 15 14 18 18 C 1.41080 * 120.09803 * 179.70077 * 17 16 15 19 19 H 1.08004 * 119.99350 * 208.80113 * 18 17 16 20 20 C 1.40232 * 120.00367 * 28.79652 * 18 17 16 21 21 N 1.30644 * 120.00253 * 10.99399 * 20 18 17 22 22 Si 1.86801 * 119.99977 * 190.99517 * 20 18 17 23 23 H 1.48496 * 109.47205 * 60.00265 * 22 20 18 24 24 H 1.48501 * 109.47067 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47234 * 300.00102 * 22 20 18 26 26 C 1.40895 * 119.79731 * 359.71416 * 17 16 15 27 27 C 1.36300 * 119.89438 * 0.02562 * 26 17 16 28 28 H 1.08994 * 109.47024 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47203 * 300.00021 * 1 2 3 30 30 H 1.09010 * 109.46823 * 59.99424 * 1 2 3 31 31 H 1.07994 * 120.06908 * 359.97438 * 5 4 2 32 32 H 1.07996 * 119.77375 * 179.69431 * 8 6 5 33 33 H 1.08002 * 119.93716 * 180.02562 * 9 8 6 34 34 H 0.97004 * 120.00340 * 145.49903 * 11 10 9 35 35 H 1.07998 * 119.95083 * 359.97438 * 15 14 12 36 36 H 1.07998 * 120.04585 * 180.24646 * 16 15 14 37 37 H 0.96997 * 120.00128 * 180.02562 * 21 20 18 38 38 H 1.08005 * 120.05457 * 179.97438 * 26 17 16 39 39 H 1.08006 * 119.94522 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2407 -1.2709 -0.0006 5 6 1.5507 -2.4829 0.1229 6 6 2.2469 -3.6732 0.1161 7 9 1.5801 -4.8426 0.2301 8 6 3.6304 -3.6754 -0.0013 9 6 4.3243 -2.4884 -0.1184 10 6 3.6414 -1.2792 -0.1191 11 7 4.3400 -0.0822 -0.2366 12 6 5.5622 0.0420 0.3179 13 8 6.0946 -0.9198 0.8375 14 6 6.2541 1.3453 0.2944 15 6 5.6412 2.4502 -0.3096 16 6 6.2741 3.6573 -0.3286 17 6 7.5518 3.7895 0.2504 18 6 8.2134 5.0353 0.2276 19 1 9.2928 5.0735 0.2217 20 6 7.4697 6.2241 0.2126 21 7 6.1828 6.1924 0.4351 22 14 8.3192 7.8530 -0.1258 23 1 8.9548 7.8106 -1.4671 24 1 7.3192 8.9502 -0.0870 25 1 9.3586 8.0932 0.9072 26 6 8.1668 2.6737 0.8519 27 6 7.5241 1.4719 0.8708 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5140 -0.8900 31 1 0.4751 -2.4859 0.2194 32 1 4.1671 -4.6125 -0.0007 33 1 5.4004 -2.4998 -0.2097 34 1 3.9476 0.6632 -0.7175 35 1 4.6639 2.3467 -0.7574 36 1 5.7989 4.5097 -0.7911 37 1 5.6683 7.0146 0.4243 38 1 9.1463 2.7702 1.2966 39 1 7.9950 0.6158 1.3313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133970680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:44 Heat of formation + Delta-G solvation = -83.493595 kcal Electronic energy + Delta-G solvation = -26244.795417 eV Core-core repulsion = 22224.047082 eV Total energy + Delta-G solvation = -4020.748336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.87943 -42.02323 -40.47450 -39.31843 -38.64610 -35.81433 -35.68476 -33.30029 -32.30694 -31.37639 -30.42565 -30.09315 -27.70333 -25.26500 -24.60047 -23.20494 -22.75693 -21.50910 -21.13994 -19.43328 -19.14749 -18.54594 -18.23668 -17.36423 -17.18349 -16.65528 -16.41956 -16.16890 -15.92376 -15.84170 -15.77610 -15.70145 -15.27117 -15.03923 -14.54732 -14.20511 -14.13268 -13.87844 -13.72454 -13.51134 -13.31436 -13.00565 -12.99053 -12.86129 -12.67143 -12.58309 -12.39017 -11.80337 -11.48551 -11.42089 -11.21109 -10.97997 -10.62517 -10.25569 -9.65399 -9.50602 -9.13697 -8.77858 -6.54985 -0.61704 -0.03132 0.39321 1.09917 1.25603 1.38176 1.42393 1.51681 1.94725 2.08895 2.15717 2.51591 2.75239 2.89324 3.22691 3.54995 3.61854 3.82789 3.98571 4.07628 4.18571 4.25249 4.36919 4.39287 4.53985 4.65653 4.67292 4.87754 4.90370 4.96617 5.01279 5.06202 5.10181 5.21227 5.24475 5.36768 5.54242 5.72753 5.78482 5.87419 5.94786 6.16689 6.36815 6.47918 6.49992 6.72423 6.82246 7.14470 8.16068 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.002818 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.952424 B = 9932.966545 C =11101.173540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.393 3.607 3 O -0.497 6.497 4 C -0.195 4.195 5 C -0.068 4.068 6 C 0.059 3.941 7 F -0.135 7.135 8 C -0.091 4.091 9 C -0.131 4.131 10 C 0.183 3.817 11 N -0.662 5.662 12 C 0.572 3.428 13 O -0.573 6.573 14 C -0.295 4.295 15 C -0.054 4.054 16 C -0.191 4.191 17 C 0.105 3.895 18 C -0.469 4.469 19 H 0.090 0.910 20 C 0.032 3.968 21 N -0.805 5.805 22 Si 0.993 3.007 23 H -0.256 1.256 24 H -0.266 1.266 25 H -0.257 1.257 26 C -0.247 4.247 27 C -0.027 4.027 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.189 0.811 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.420 0.580 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.296 0.704 38 H 0.112 0.888 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.846 -11.458 -3.319 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.275 3.725 3 O -0.375 6.375 4 C -0.199 4.199 5 C -0.086 4.086 6 C 0.039 3.961 7 F -0.114 7.114 8 C -0.110 4.110 9 C -0.151 4.151 10 C 0.085 3.915 11 N -0.308 5.308 12 C 0.369 3.631 13 O -0.455 6.455 14 C -0.299 4.299 15 C -0.073 4.073 16 C -0.210 4.210 17 C 0.101 3.899 18 C -0.496 4.496 19 H 0.109 0.891 20 C -0.186 4.186 21 N -0.429 5.429 22 Si 0.812 3.188 23 H -0.180 1.180 24 H -0.190 1.190 25 H -0.181 1.181 26 C -0.266 4.266 27 C -0.046 4.046 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.206 0.794 32 H 0.181 0.819 33 H 0.156 0.844 34 H 0.263 0.737 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.393 -11.374 -2.923 17.073 hybrid contribution 0.323 0.832 -0.125 0.901 sum -12.070 -10.542 -3.048 16.313 Atomic orbital electron populations 1.22261 0.89172 1.07038 1.06176 1.23011 0.94030 0.86033 0.69473 1.90529 1.72815 1.35450 1.38753 1.20380 0.91652 0.96696 1.11195 1.21537 1.02439 0.88247 0.96419 1.17475 0.90086 0.81760 1.06745 1.91518 1.80376 1.45645 1.93867 1.21475 0.92749 0.99556 0.97214 1.21238 1.01631 0.90235 1.02035 1.18449 0.91061 0.86603 0.95397 1.43594 1.17861 1.14982 1.54409 1.18573 0.79973 0.88636 0.75922 1.90597 1.66596 1.40706 1.47625 1.19034 0.99313 0.92784 1.18817 1.20697 0.97517 0.92585 0.96537 1.21033 0.98103 0.96431 1.05477 1.18173 0.92102 0.93166 0.86409 1.20144 0.95665 0.90827 1.43011 0.89149 1.27010 0.95269 1.05283 0.91022 1.69756 1.08886 1.32575 1.31680 0.85077 0.78818 0.74644 0.80238 1.18031 1.18990 1.18123 1.20932 1.02381 0.93971 1.09313 1.20520 0.92844 0.96595 0.94630 0.86858 0.87727 0.87193 0.79364 0.81885 0.84374 0.73705 0.87225 0.86845 0.89260 0.87032 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 10.19 71.24 0.73 -1.57 16 2 C 0.39 9.27 7.19 27.91 0.20 9.47 16 3 O -0.50 -16.38 14.72 -3.10 -0.05 -16.43 16 4 C -0.20 -4.73 5.88 -20.05 -0.12 -4.85 16 5 C -0.07 -1.17 9.39 22.62 0.21 -0.95 16 6 C 0.06 1.15 7.28 22.33 0.16 1.32 16 7 F -0.14 -2.50 17.26 44.97 0.78 -1.72 16 8 C -0.09 -1.99 10.00 22.36 0.22 -1.77 16 9 C -0.13 -3.84 8.68 22.36 0.19 -3.65 16 10 C 0.18 5.77 6.32 38.71 0.24 6.01 16 11 N -0.66 -24.65 4.51 -305.61 -1.38 -26.02 16 12 C 0.57 25.04 7.61 86.71 0.66 25.70 16 13 O -0.57 -26.29 13.69 -4.01 -0.05 -26.34 16 14 C -0.30 -14.00 5.89 -19.94 -0.12 -14.12 16 15 C -0.05 -2.58 9.47 22.26 0.21 -2.37 16 16 C -0.19 -9.87 8.60 22.47 0.19 -9.67 16 17 C 0.10 5.51 5.55 -21.28 -0.12 5.39 16 18 C -0.47 -23.75 9.05 23.45 0.21 -23.54 16 19 H 0.09 4.31 7.87 -2.91 -0.02 4.28 16 20 C 0.03 1.52 5.25 85.35 0.45 1.97 16 21 N -0.81 -39.64 10.84 21.87 0.24 -39.40 16 22 Si 0.99 35.15 29.58 68.60 2.03 37.17 16 23 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 24 H -0.27 -8.90 7.11 99.48 0.71 -8.20 16 25 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 26 C -0.25 -12.19 9.73 22.47 0.22 -11.97 16 27 C -0.03 -1.28 9.52 22.26 0.21 -1.07 16 28 H 0.11 0.62 5.64 -2.39 -0.01 0.61 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.19 1.59 5.98 -2.91 -0.02 1.57 16 32 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.14 4.62 6.14 -2.91 -0.02 4.60 16 34 H 0.42 15.35 4.55 -92.71 -0.42 14.93 16 35 H 0.11 4.70 6.38 -2.91 -0.02 4.68 16 36 H 0.11 5.99 6.21 -2.91 -0.02 5.97 16 37 H 0.30 13.07 8.29 -92.71 -0.77 12.30 16 38 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 39 H 0.11 5.04 7.63 -2.91 -0.02 5.02 16 Total: -1.00 -64.90 338.64 6.04 -58.86 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: 0.71 Total: 39.55 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 3.77 Total: -25.66 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: -1.14 Total: -65.43 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.10 Total: -42.77 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 35.15 SS G_CDS: 2.03 Total: 37.17 kcal Total: -64.90 6.04 -58.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133970680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.633 kcal (2) G-P(sol) polarization free energy of solvation -64.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds