Wall clock time and date at job start Tue Mar 31 2020 15:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21225 * 119.99987 * 2 1 4 4 C 1.47376 * 119.99686 * 179.97438 * 2 1 3 5 5 C 1.39817 * 120.02408 * 180.02562 * 4 2 1 6 6 C 1.37766 * 119.97007 * 179.97438 * 5 4 2 7 7 C 1.39587 * 120.02988 * 0.27661 * 6 5 4 8 8 C 1.48026 * 119.97395 * 179.72476 * 7 6 5 9 9 O 1.21538 * 120.00044 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99701 * 179.97438 * 8 7 6 11 11 C 1.39911 * 119.99904 * 174.87292 * 10 8 7 12 12 C 1.39396 * 119.91390 * 146.33146 * 11 10 8 13 13 C 1.38359 * 120.46520 * 179.97438 * 12 11 10 14 14 C 1.38009 * 120.29310 * 0.02562 * 13 12 11 15 15 F 1.35099 * 120.09682 * 179.97438 * 14 13 12 16 16 C 1.41015 * 119.81577 * 0.02562 * 14 13 12 17 17 C 1.41301 * 120.22559 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00003 * 331.50172 * 17 16 14 19 19 C 1.39928 * 119.99759 * 151.51235 * 17 16 14 20 20 N 1.30848 * 119.99950 * 348.97469 * 19 17 16 21 21 Si 1.86798 * 119.99823 * 168.97540 * 19 17 16 22 22 H 1.48498 * 109.47461 * 89.99651 * 21 19 17 23 23 H 1.48496 * 109.47304 * 210.00063 * 21 19 17 24 24 H 1.48506 * 109.47329 * 329.99745 * 21 19 17 25 25 C 1.38170 * 119.91103 * 326.06644 * 11 10 8 26 26 C 1.39595 * 120.05123 * 359.44653 * 7 6 5 27 27 C 1.37762 * 120.02661 * 0.54821 * 26 7 6 28 28 H 1.08999 * 109.47674 * 240.00378 * 1 2 3 29 29 H 1.09005 * 109.47278 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47517 * 119.99994 * 1 2 3 31 31 H 1.08002 * 120.01344 * 359.95434 * 5 4 2 32 32 H 1.08008 * 119.98351 * 179.97438 * 6 5 4 33 33 H 0.97001 * 120.00177 * 354.86662 * 10 8 7 34 34 H 1.07999 * 119.76461 * 0.02562 * 12 11 10 35 35 H 1.08001 * 119.85157 * 180.02562 * 13 12 11 36 36 H 0.97001 * 119.99795 * 180.02562 * 20 19 17 37 37 H 1.08003 * 120.14540 * 359.97438 * 25 11 10 38 38 H 1.07993 * 119.98773 * 180.25832 * 26 7 6 39 39 H 1.07996 * 120.01515 * 179.69897 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2438 -1.2764 0.0006 5 6 3.6420 -1.2770 0.0011 6 6 4.3296 -2.4708 0.0022 7 6 3.6311 -3.6793 -0.0031 8 6 4.3712 -4.9613 -0.0081 9 8 5.5866 -4.9613 -0.0081 10 7 3.6973 -6.1284 -0.0127 11 6 4.3926 -7.3372 -0.1257 12 6 3.9208 -8.4743 0.5281 13 6 4.5990 -9.6757 0.4238 14 6 5.7522 -9.7610 -0.3296 15 9 6.4116 -10.9360 -0.4284 16 6 6.2409 -8.6179 -0.9953 17 6 7.4205 -8.6955 -1.7694 18 1 8.1840 -9.4172 -1.5193 19 6 7.5993 -7.8372 -2.8600 20 7 6.5980 -7.1168 -3.2966 21 14 9.2673 -7.7200 -3.6925 22 1 9.3466 -8.7220 -4.7856 23 1 9.4446 -6.3576 -4.2560 24 1 10.3370 -7.9871 -2.6977 25 6 5.5421 -7.4021 -0.8896 26 6 2.2352 -3.6799 0.0022 27 6 1.5453 -2.4875 0.0012 28 1 -0.3634 -0.5137 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 4.1826 -0.3421 0.0004 32 1 5.4097 -2.4716 0.0022 33 1 2.7302 -6.1303 0.0624 34 1 3.0190 -8.4173 1.1196 35 1 4.2244 -10.5507 0.9342 36 1 6.7219 -6.5221 -4.0528 37 1 5.9047 -6.5219 -1.3998 38 1 1.6958 -4.6155 0.0023 39 1 0.4653 -2.4882 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148309427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:51 Heat of formation + Delta-G solvation = -72.064121 kcal Electronic energy + Delta-G solvation = -25983.733879 eV Core-core repulsion = 21963.481162 eV Total energy + Delta-G solvation = -4020.252716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -47.22691 -40.53689 -39.67615 -38.13794 -36.94125 -34.49058 -33.37524 -32.36041 -31.35078 -29.82775 -29.78189 -27.98685 -25.50277 -24.78169 -22.75362 -22.03705 -21.25455 -20.32417 -19.63337 -18.39071 -17.45824 -16.75722 -16.20417 -16.06296 -15.56818 -15.34816 -15.20069 -15.10652 -14.72557 -14.30562 -14.22715 -14.01943 -13.96049 -13.76735 -13.10735 -12.84611 -12.84226 -12.57097 -12.43278 -12.33286 -11.90865 -11.85854 -11.66664 -11.36099 -11.20153 -11.02232 -10.52395 -10.37733 -10.12096 -9.82988 -9.58255 -9.37791 -9.29534 -9.21187 -8.96882 -7.58958 -6.97380 -6.77600 -4.47199 0.12686 1.09815 1.88256 2.48104 2.72540 3.06028 3.07103 3.12914 3.18932 3.43451 3.68256 3.80845 3.91299 4.41997 4.51674 4.60539 4.65851 4.79875 5.00426 5.03502 5.05065 5.18564 5.40569 5.43915 5.55486 5.69143 5.83848 5.90584 6.02657 6.08665 6.13306 6.31532 6.51639 6.63176 6.81453 6.88977 7.12310 7.16022 7.34744 7.45525 7.59767 7.94015 7.99824 8.14803 8.38689 8.64345 8.72287 8.77494 10.12035 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.003010 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.752411 B = 9299.366714 C =10715.227248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.395 3.605 3 O -0.456 6.456 4 C -0.159 4.159 5 C -0.068 4.068 6 C -0.074 4.074 7 C -0.087 4.087 8 C 0.542 3.458 9 O -0.502 6.502 10 N -0.657 5.657 11 C 0.131 3.869 12 C -0.238 4.238 13 C -0.109 4.109 14 C -0.036 4.036 15 F -0.163 7.163 16 C 0.094 3.906 17 C -0.446 4.446 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.790 5.790 21 Si 0.917 3.083 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.131 4.131 26 C -0.103 4.103 27 C -0.080 4.080 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.398 0.602 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.282 0.718 37 H 0.149 0.851 38 H 0.134 0.866 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.153 10.704 4.202 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.273 3.727 3 O -0.332 6.332 4 C -0.160 4.160 5 C -0.086 4.086 6 C -0.093 4.093 7 C -0.090 4.090 8 C 0.329 3.671 9 O -0.376 6.376 10 N -0.301 5.301 11 C 0.039 3.961 12 C -0.259 4.259 13 C -0.129 4.129 14 C -0.056 4.056 15 F -0.142 7.142 16 C 0.090 3.910 17 C -0.475 4.475 18 H 0.102 0.898 19 C -0.144 4.144 20 N -0.415 5.415 21 Si 0.741 3.259 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.152 4.152 26 C -0.122 4.122 27 C -0.098 4.098 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.233 0.767 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.166 0.834 38 H 0.152 0.848 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.995 11.420 3.986 17.035 hybrid contribution 0.098 -0.320 -0.424 0.540 sum -11.897 11.100 3.562 16.656 Atomic orbital electron populations 1.22258 0.93511 1.05253 1.04724 1.22607 0.91770 0.87501 0.70843 1.90540 1.72236 1.34284 1.36115 1.20661 0.94708 0.94857 1.05810 1.21411 0.93060 0.98692 0.95464 1.21339 1.01545 0.90403 0.95991 1.20380 0.93813 0.94205 1.00650 1.18274 0.87564 0.83448 0.77852 1.90852 1.12989 1.86882 1.46906 1.43245 1.09869 1.04884 1.72102 1.17575 0.95843 0.83572 0.99075 1.19836 1.04101 0.92657 1.09353 1.20242 0.95240 0.97210 1.00189 1.17917 0.95636 0.81599 1.10479 1.91270 1.81057 1.46085 1.95791 1.17515 0.93368 0.89129 0.91022 1.19512 1.02477 1.16170 1.09359 0.89803 1.25916 0.98471 0.93377 0.96681 1.69757 1.31396 1.19303 1.21020 0.86165 0.81815 0.78355 0.79606 1.19349 1.19950 1.18296 1.21329 0.95682 0.98775 0.99411 1.21323 0.93078 0.98723 0.99067 1.21327 1.00203 0.91041 0.97216 0.88651 0.89660 0.88623 0.84319 0.83730 0.76656 0.88185 0.87664 0.90671 0.83385 0.84793 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.04 8.92 36.01 0.32 -0.72 16 2 C 0.39 3.69 7.23 -30.59 -0.22 3.47 16 3 O -0.46 -5.85 17.07 5.61 0.10 -5.76 16 4 C -0.16 -1.58 5.87 -105.00 -0.62 -2.19 16 5 C -0.07 -0.78 9.58 -39.16 -0.38 -1.16 16 6 C -0.07 -0.98 9.58 -39.25 -0.38 -1.35 16 7 C -0.09 -1.20 5.88 -104.87 -0.62 -1.82 16 8 C 0.54 9.90 7.51 -12.25 -0.09 9.80 16 9 O -0.50 -11.43 14.04 5.33 0.07 -11.36 16 10 N -0.66 -11.51 5.28 -10.70 -0.06 -11.56 16 11 C 0.13 2.90 6.26 -83.76 -0.52 2.38 16 12 C -0.24 -4.90 9.96 -39.11 -0.39 -5.29 16 13 C -0.11 -2.41 10.00 -39.62 -0.40 -2.80 16 14 C -0.04 -0.91 7.31 -38.61 -0.28 -1.19 16 15 F -0.16 -4.11 16.75 2.25 0.04 -4.08 16 16 C 0.09 2.55 5.56 -106.78 -0.59 1.96 16 17 C -0.45 -12.21 8.76 -37.79 -0.33 -12.54 16 18 H 0.08 2.25 7.76 -52.49 -0.41 1.84 16 19 C 0.07 1.89 5.25 -17.34 -0.09 1.80 16 20 N -0.79 -20.59 10.81 55.55 0.60 -19.99 16 21 Si 0.92 19.27 29.57 -169.99 -5.03 14.25 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.13 -3.40 7.25 -38.70 -0.28 -3.68 16 26 C -0.10 -1.04 9.52 -39.25 -0.37 -1.41 16 27 C -0.08 -0.65 9.46 -39.17 -0.37 -1.02 16 28 H 0.09 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.10 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.14 1.49 7.64 -52.49 -0.40 1.09 16 32 H 0.14 1.99 7.64 -52.48 -0.40 1.59 16 33 H 0.40 5.17 6.85 -40.82 -0.28 4.89 16 34 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 37 H 0.15 4.11 4.55 -52.48 -0.24 3.87 16 38 H 0.13 1.02 6.40 -52.49 -0.34 0.69 16 39 H 0.14 0.63 7.03 -52.49 -0.37 0.26 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -32.74 345.32 -8.35 -41.09 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.67 Total: 7.97 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -5.61 Total: -15.78 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.54 Total: -31.55 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.17 Total: -17.11 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.04 Total: -4.08 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.74 -8.35 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148309427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.974 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds