Wall clock time and date at job start Tue Mar 31 2020 15:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21225 * 119.99987 * 2 1 4 4 C 1.47376 * 119.99686 * 179.97438 * 2 1 3 5 5 C 1.39817 * 120.02408 * 180.02562 * 4 2 1 6 6 C 1.37766 * 119.97007 * 179.97438 * 5 4 2 7 7 C 1.39587 * 120.02988 * 0.27661 * 6 5 4 8 8 C 1.48026 * 119.97395 * 179.72476 * 7 6 5 9 9 O 1.21538 * 120.00044 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99701 * 179.97438 * 8 7 6 11 11 C 1.39911 * 119.99904 * 174.87292 * 10 8 7 12 12 C 1.39396 * 119.91390 * 146.33146 * 11 10 8 13 13 C 1.38359 * 120.46520 * 179.97438 * 12 11 10 14 14 C 1.38009 * 120.29310 * 0.02562 * 13 12 11 15 15 F 1.35099 * 120.09682 * 179.97438 * 14 13 12 16 16 C 1.41015 * 119.81577 * 0.02562 * 14 13 12 17 17 C 1.41301 * 120.22559 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00003 * 331.50172 * 17 16 14 19 19 C 1.39928 * 119.99759 * 151.51235 * 17 16 14 20 20 N 1.30848 * 119.99950 * 348.97469 * 19 17 16 21 21 Si 1.86798 * 119.99823 * 168.97540 * 19 17 16 22 22 H 1.48498 * 109.47461 * 89.99651 * 21 19 17 23 23 H 1.48496 * 109.47304 * 210.00063 * 21 19 17 24 24 H 1.48506 * 109.47329 * 329.99745 * 21 19 17 25 25 C 1.38170 * 119.91103 * 326.06644 * 11 10 8 26 26 C 1.39595 * 120.05123 * 359.44653 * 7 6 5 27 27 C 1.37762 * 120.02661 * 0.54821 * 26 7 6 28 28 H 1.08999 * 109.47674 * 240.00378 * 1 2 3 29 29 H 1.09005 * 109.47278 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47517 * 119.99994 * 1 2 3 31 31 H 1.08002 * 120.01344 * 359.95434 * 5 4 2 32 32 H 1.08008 * 119.98351 * 179.97438 * 6 5 4 33 33 H 0.97001 * 120.00177 * 354.86662 * 10 8 7 34 34 H 1.07999 * 119.76461 * 0.02562 * 12 11 10 35 35 H 1.08001 * 119.85157 * 180.02562 * 13 12 11 36 36 H 0.97001 * 119.99795 * 180.02562 * 20 19 17 37 37 H 1.08003 * 120.14540 * 359.97438 * 25 11 10 38 38 H 1.07993 * 119.98773 * 180.25832 * 26 7 6 39 39 H 1.07996 * 120.01515 * 179.69897 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2438 -1.2764 0.0006 5 6 3.6420 -1.2770 0.0011 6 6 4.3296 -2.4708 0.0022 7 6 3.6311 -3.6793 -0.0031 8 6 4.3712 -4.9613 -0.0081 9 8 5.5866 -4.9613 -0.0081 10 7 3.6973 -6.1284 -0.0127 11 6 4.3926 -7.3372 -0.1257 12 6 3.9208 -8.4743 0.5281 13 6 4.5990 -9.6757 0.4238 14 6 5.7522 -9.7610 -0.3296 15 9 6.4116 -10.9360 -0.4284 16 6 6.2409 -8.6179 -0.9953 17 6 7.4205 -8.6955 -1.7694 18 1 8.1840 -9.4172 -1.5193 19 6 7.5993 -7.8372 -2.8600 20 7 6.5980 -7.1168 -3.2966 21 14 9.2673 -7.7200 -3.6925 22 1 9.3466 -8.7220 -4.7856 23 1 9.4446 -6.3576 -4.2560 24 1 10.3370 -7.9871 -2.6977 25 6 5.5421 -7.4021 -0.8896 26 6 2.2352 -3.6799 0.0022 27 6 1.5453 -2.4875 0.0012 28 1 -0.3634 -0.5137 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 4.1826 -0.3421 0.0004 32 1 5.4097 -2.4716 0.0022 33 1 2.7302 -6.1303 0.0624 34 1 3.0190 -8.4173 1.1196 35 1 4.2244 -10.5507 0.9342 36 1 6.7219 -6.5221 -4.0528 37 1 5.9047 -6.5219 -1.3998 38 1 1.6958 -4.6155 0.0023 39 1 0.4653 -2.4882 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148309427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:50 Heat of formation + Delta-G solvation = -91.929341 kcal Electronic energy + Delta-G solvation = -25984.595299 eV Core-core repulsion = 21963.481162 eV Total energy + Delta-G solvation = -4021.114137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.18284 -41.70139 -40.76943 -39.31927 -38.48756 -36.22151 -35.11636 -33.23088 -32.29718 -31.69222 -30.50105 -29.55331 -27.39048 -25.86382 -23.74062 -23.56984 -22.82922 -21.63893 -20.74034 -19.90444 -18.92628 -17.97059 -17.84818 -17.62927 -16.94630 -16.57901 -16.35924 -16.18857 -16.04305 -15.93820 -15.79483 -15.31936 -15.03641 -14.78961 -14.55213 -14.41629 -13.83339 -13.76788 -13.65372 -13.52405 -13.47126 -13.01014 -12.96667 -12.89917 -12.80581 -12.33574 -12.17753 -12.16250 -11.64146 -11.31574 -11.11401 -10.85502 -10.67964 -10.17688 -10.12133 -9.47929 -8.79386 -8.62130 -6.47800 -0.78993 0.26647 0.61727 0.89317 1.11380 1.31209 1.41853 1.46346 1.93949 2.06729 2.15163 2.63207 2.79533 2.99513 3.49302 3.59790 3.66696 3.84645 4.03909 4.13478 4.23192 4.25522 4.32088 4.55105 4.63106 4.66861 4.74773 4.89586 4.93272 5.00285 5.03528 5.08058 5.14564 5.19036 5.24417 5.35251 5.59861 5.66954 5.72097 5.76126 6.04725 6.17153 6.47603 6.48212 6.55894 6.77152 6.84833 7.21119 8.24762 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.003010 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.752411 B = 9299.366714 C =10715.227248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.396 3.604 3 O -0.501 6.501 4 C -0.158 4.158 5 C -0.080 4.080 6 C -0.090 4.090 7 C -0.109 4.109 8 C 0.540 3.460 9 O -0.560 6.560 10 N -0.643 5.643 11 C 0.135 3.865 12 C -0.214 4.214 13 C -0.105 4.105 14 C -0.067 4.067 15 F -0.170 7.170 16 C 0.059 3.941 17 C -0.493 4.493 18 H 0.071 0.929 19 C 0.033 3.967 20 N -0.819 5.819 21 Si 0.983 3.017 22 H -0.256 1.256 23 H -0.265 1.265 24 H -0.262 1.262 25 C -0.159 4.159 26 C -0.091 4.091 27 C -0.056 4.056 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.423 0.577 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.287 0.713 37 H 0.123 0.877 38 H 0.167 0.833 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.660 11.109 5.039 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.277 3.723 3 O -0.379 6.379 4 C -0.159 4.159 5 C -0.098 4.098 6 C -0.109 4.109 7 C -0.112 4.112 8 C 0.329 3.671 9 O -0.438 6.438 10 N -0.289 5.289 11 C 0.042 3.958 12 C -0.235 4.235 13 C -0.124 4.124 14 C -0.087 4.087 15 F -0.149 7.149 16 C 0.055 3.945 17 C -0.522 4.522 18 H 0.089 0.911 19 C -0.182 4.182 20 N -0.445 5.445 21 Si 0.803 3.197 22 H -0.180 1.180 23 H -0.189 1.189 24 H -0.186 1.186 25 C -0.181 4.181 26 C -0.109 4.109 27 C -0.074 4.074 28 H 0.142 0.858 29 H 0.103 0.897 30 H 0.140 0.860 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.264 0.736 34 H 0.171 0.829 35 H 0.160 0.840 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.185 0.815 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -16.577 11.817 4.838 20.925 hybrid contribution 1.292 -0.374 -0.545 1.451 sum -15.285 11.443 4.293 19.570 Atomic orbital electron populations 1.22326 0.89353 1.06226 1.07183 1.23259 0.93812 0.86225 0.69012 1.90544 1.73510 1.35581 1.38295 1.21015 0.93946 0.96555 1.04392 1.21414 0.94441 0.97687 0.96247 1.21200 1.00753 0.91396 0.97580 1.20090 0.95470 0.91503 1.04175 1.19019 0.87183 0.84875 0.76032 1.90829 1.15827 1.87768 1.49383 1.43086 1.10971 1.03314 1.71580 1.17718 0.94786 0.85842 0.97474 1.20398 1.04738 0.91007 1.07357 1.20692 0.93615 0.99214 0.98917 1.18290 0.97226 0.81151 1.12034 1.91235 1.81494 1.46185 1.95995 1.17882 0.94133 0.90420 0.92033 1.19660 1.03302 1.17893 1.11366 0.91098 1.26720 1.02073 0.92613 0.96757 1.69814 1.33078 1.19987 1.21627 0.85183 0.76965 0.78922 0.78590 1.17982 1.18892 1.18568 1.21208 0.97863 0.97631 1.01400 1.21677 0.91048 1.01066 0.97120 1.21829 1.02516 0.88992 0.94018 0.85757 0.89750 0.85988 0.84746 0.86126 0.73643 0.82866 0.83976 0.90207 0.85933 0.81530 0.79124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.02 8.92 71.24 0.64 -0.39 16 2 C 0.40 6.26 7.23 28.09 0.20 6.47 16 3 O -0.50 -12.41 17.07 -2.86 -0.05 -12.46 16 4 C -0.16 -2.69 5.87 -20.11 -0.12 -2.81 16 5 C -0.08 -1.83 9.58 22.54 0.22 -1.62 16 6 C -0.09 -2.50 9.58 22.48 0.22 -2.29 16 7 C -0.11 -2.94 5.88 -20.03 -0.12 -3.06 16 8 C 0.54 19.96 7.51 86.84 0.65 20.61 16 9 O -0.56 -27.21 14.04 -3.84 -0.05 -27.27 16 10 N -0.64 -21.45 5.28 -306.05 -1.62 -23.07 16 11 C 0.14 5.87 6.26 38.11 0.24 6.11 16 12 C -0.21 -8.11 9.96 22.58 0.22 -7.88 16 13 C -0.11 -4.41 10.00 22.24 0.22 -4.19 16 14 C -0.07 -3.45 7.31 22.90 0.17 -3.29 16 15 F -0.17 -8.83 16.75 44.97 0.75 -8.08 16 16 C 0.06 3.37 5.56 -21.26 -0.12 3.25 16 17 C -0.49 -28.79 8.76 23.43 0.21 -28.59 16 18 H 0.07 4.11 7.76 -2.91 -0.02 4.09 16 19 C 0.03 1.79 5.25 85.25 0.45 2.24 16 20 N -0.82 -45.10 10.81 21.82 0.24 -44.86 16 21 Si 0.98 41.47 29.57 68.60 2.03 43.50 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 25 C -0.16 -8.64 7.25 22.84 0.17 -8.47 16 26 C -0.09 -1.45 9.52 22.48 0.21 -1.24 16 27 C -0.06 -0.62 9.46 22.54 0.21 -0.41 16 28 H 0.12 0.02 8.08 -2.39 -0.02 0.00 16 29 H 0.08 0.54 8.12 -2.38 -0.02 0.52 16 30 H 0.12 0.09 8.08 -2.39 -0.02 0.07 16 31 H 0.13 3.10 7.64 -2.91 -0.02 3.08 16 32 H 0.12 3.79 7.64 -2.91 -0.02 3.76 16 33 H 0.42 9.30 6.85 -92.71 -0.64 8.66 16 34 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 36 H 0.29 14.40 8.30 -92.71 -0.77 13.63 16 37 H 0.12 7.27 4.55 -2.91 -0.01 7.26 16 38 H 0.17 1.53 6.40 -2.91 -0.02 1.51 16 39 H 0.19 0.17 7.03 -2.91 -0.02 0.15 16 Total: -1.00 -81.06 345.32 5.46 -75.60 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.49 Total: 22.17 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 3.67 Total: -25.54 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -1.38 Total: -67.93 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.10 Total: -39.72 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 0.75 Total: -8.08 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -81.06 5.46 -75.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148309427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.325 kcal (2) G-P(sol) polarization free energy of solvation -81.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds