Wall clock time and date at job start Tue Mar 31 2020 15:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.46988 * 2 1 4 4 C 1.34236 * 117.00209 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99369 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00156 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.47040 * 180.02562 * 6 4 3 8 8 C 1.46896 * 111.00152 * 71.83581 * 7 6 4 9 9 C 1.50706 * 109.47072 * 193.95490 * 8 7 6 10 10 H 1.08001 * 119.99913 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99959 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00139 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99950 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47266 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47474 * 119.99603 * 13 11 9 16 16 H 1.48500 * 109.46557 * 239.99562 * 13 11 9 17 17 C 1.38540 * 111.00172 * 195.79472 * 7 6 4 18 18 N 1.32984 * 120.51882 * 295.62177 * 17 7 6 19 19 C 1.31872 * 120.67270 * 180.02562 * 18 17 7 20 20 Cl 1.73599 * 119.10344 * 179.97438 * 19 18 17 21 21 N 1.31925 * 121.79617 * 359.97438 * 19 18 17 22 22 C 1.32536 * 120.99362 * 0.02562 * 21 19 18 23 23 C 1.50707 * 120.38830 * 179.97438 * 22 21 19 24 24 C 1.38112 * 119.22012 * 359.97438 * 22 21 19 25 25 C 1.50704 * 120.82173 * 179.72882 * 24 22 21 26 26 H 1.09007 * 109.47199 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46914 * 299.99454 * 1 2 3 28 28 H 1.08999 * 109.47167 * 59.99774 * 1 2 3 29 29 H 1.09000 * 109.46914 * 240.00546 * 2 1 3 30 30 H 1.08993 * 109.47533 * 120.00456 * 2 1 3 31 31 H 1.08996 * 109.47635 * 59.99502 * 6 4 3 32 32 H 1.09004 * 109.46546 * 299.99917 * 6 4 3 33 33 H 1.09001 * 109.47723 * 313.95468 * 8 7 6 34 34 H 1.09004 * 109.47070 * 73.95936 * 8 7 6 35 35 H 0.97000 * 120.00552 * 180.02562 * 12 11 9 36 36 H 1.08999 * 109.47017 * 270.01628 * 23 22 21 37 37 H 1.08997 * 109.46887 * 30.02473 * 23 22 21 38 38 H 1.09006 * 109.46577 * 150.02052 * 23 22 21 39 39 H 1.09004 * 109.46672 * 85.11785 * 25 24 22 40 40 H 1.08995 * 109.47215 * 205.11957 * 25 24 22 41 41 H 1.09001 * 109.46719 * 325.12112 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 7 5.3877 2.8606 -0.0014 8 6 5.8899 2.4071 -1.3052 9 6 7.3387 2.0130 -1.1760 10 1 7.8367 2.0919 -0.2209 11 6 8.0288 1.5526 -2.2773 12 7 7.4225 1.4570 -3.4405 13 14 9.8244 1.0634 -2.1170 14 1 10.2684 1.2624 -0.7140 15 1 9.9834 -0.3654 -2.4889 16 1 10.6492 1.9049 -3.0209 17 6 5.9489 4.0772 0.3511 18 7 5.7835 5.1465 -0.4219 19 6 6.3168 6.3059 -0.0896 20 17 6.0756 7.6752 -1.1291 21 7 7.0286 6.4535 1.0112 22 6 7.2368 5.4334 1.8314 23 6 8.0526 5.6173 3.0851 24 6 6.6972 4.1999 1.5235 25 6 6.9163 3.0139 2.4272 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.5852 3.4691 0.8904 32 1 3.5843 3.4700 -0.8896 33 1 5.3082 1.5482 -1.6400 34 1 5.7964 3.2146 -2.0314 35 1 7.9078 1.1327 -4.2152 36 1 9.1021 5.4184 2.8680 37 1 7.9431 6.6410 3.4429 38 1 7.7026 4.9252 3.8511 39 1 6.1687 3.0187 3.2205 40 1 6.8262 2.0947 1.8486 41 1 7.9123 3.0709 2.8663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157152331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:50 Heat of formation + Delta-G solvation = -33.226957 kcal Electronic energy + Delta-G solvation = -26233.919919 eV Core-core repulsion = 22368.671515 eV Total energy + Delta-G solvation = -3865.248404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06030 -40.05803 -37.40839 -36.60596 -35.92297 -34.22562 -32.84496 -32.24856 -31.63050 -28.99986 -28.48889 -27.18944 -25.65941 -23.17678 -23.03341 -22.33155 -21.29202 -20.23381 -17.91377 -17.60652 -16.66869 -16.47115 -16.16729 -15.95609 -15.33095 -14.79913 -14.53157 -14.21330 -14.14931 -13.66029 -13.41226 -13.22907 -13.06939 -12.80729 -12.60475 -12.53278 -12.38235 -12.12613 -11.82413 -11.69156 -11.51195 -11.36565 -11.21062 -11.20003 -10.81487 -10.75479 -10.73011 -10.33212 -10.22987 -9.99149 -9.89331 -9.37117 -9.05749 -8.63708 -8.51909 -7.99085 -6.07421 -4.08455 1.08433 1.25493 1.71352 2.64205 2.78073 3.28936 3.35783 3.39307 3.83987 4.06727 4.27748 4.43492 4.88301 4.93097 4.94855 5.04980 5.07646 5.26052 5.27717 5.30967 5.31357 5.35209 5.56144 5.62758 5.66724 5.72039 5.76687 5.82834 5.92283 5.94085 6.10563 6.35646 6.68213 6.72302 6.88569 7.09420 7.23200 7.53736 7.84268 7.94817 8.17151 8.18352 8.30300 8.94312 9.54167 11.03780 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.007765 B = 0.005393 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3605.196952 B = 5190.338712 C = 6873.762374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.368 6.368 4 C 0.459 3.541 5 O -0.466 6.466 6 C 0.071 3.929 7 N -0.471 5.471 8 C 0.193 3.807 9 C -0.507 4.507 10 H 0.063 0.937 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.285 1.285 17 C 0.398 3.602 18 N -0.530 5.530 19 C 0.370 3.630 20 Cl 0.005 6.995 21 N -0.519 5.519 22 C 0.178 3.822 23 C -0.101 4.101 24 C -0.154 4.154 25 C -0.100 4.100 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.262 0.738 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.421 4.692 11.664 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.286 6.286 4 C 0.299 3.701 5 O -0.349 6.349 6 C -0.057 4.057 7 N -0.196 5.196 8 C 0.070 3.930 9 C -0.546 4.546 10 H 0.081 0.919 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.211 1.211 17 C 0.162 3.838 18 N -0.251 5.251 19 C 0.075 3.925 20 Cl 0.033 6.967 21 N -0.237 5.237 22 C 0.033 3.967 23 C -0.158 4.158 24 C -0.160 4.160 25 C -0.158 4.158 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.212 4.818 11.120 14.639 hybrid contribution 0.885 -0.443 -0.587 1.151 sum -7.327 4.375 10.533 13.556 Atomic orbital electron populations 1.21791 0.92998 1.02661 1.03309 1.22941 0.94901 0.80622 1.02678 1.86456 1.25001 1.32098 1.85013 1.23383 0.80259 0.92698 0.73749 1.90750 1.59721 1.42281 1.42157 1.21403 0.89031 0.90895 1.04385 1.60102 1.02815 1.18652 1.38016 1.20103 0.96763 0.95972 0.80115 1.21015 0.94476 1.43492 0.95601 0.91888 1.24911 0.98525 0.95639 0.95105 1.69950 1.36646 1.46575 1.00004 0.86454 0.84686 0.78227 0.78191 1.19618 1.20813 1.21087 1.19789 0.89631 0.86879 0.87517 1.67985 1.24300 0.99219 1.33551 1.22505 0.92748 0.88029 0.89253 1.98397 1.95126 1.39192 1.63976 1.67597 1.16931 1.34699 1.04487 1.21365 0.93280 0.87307 0.94739 1.20755 0.99138 1.03795 0.92138 1.21283 0.99717 0.97233 0.97726 1.20644 1.00955 0.96490 0.97679 0.90494 0.91693 0.91554 0.91194 0.91389 0.88018 0.89524 0.93214 0.96613 0.92849 0.89589 0.90087 0.89801 0.91425 0.88300 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.29 37.16 0.38 -0.97 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.37 -5.61 10.22 -39.27 -0.40 -6.01 16 4 C 0.46 8.29 7.55 36.00 0.27 8.56 16 5 O -0.47 -10.06 14.70 -18.75 -0.28 -10.34 16 6 C 0.07 1.25 5.40 -4.98 -0.03 1.22 16 7 N -0.47 -9.90 3.10 -175.76 -0.54 -10.45 16 8 C 0.19 5.00 4.26 -4.97 -0.02 4.98 16 9 C -0.51 -14.21 8.80 -34.44 -0.30 -14.52 16 10 H 0.06 1.74 7.38 -52.49 -0.39 1.35 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 13 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 17 C 0.40 8.01 4.62 -154.79 -0.71 7.29 16 18 N -0.53 -10.94 9.65 -10.87 -0.10 -11.04 16 19 C 0.37 7.01 8.18 -91.97 -0.75 6.26 16 20 Cl 0.01 0.09 29.27 -51.86 -1.52 -1.43 16 21 N -0.52 -9.15 10.34 -7.97 -0.08 -9.23 16 22 C 0.18 2.81 6.81 -82.33 -0.56 2.25 16 23 C -0.10 -1.10 9.47 36.01 0.34 -0.76 16 24 C -0.15 -2.66 5.93 -104.15 -0.62 -3.28 16 25 C -0.10 -1.47 8.97 36.01 0.32 -1.14 16 26 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 30 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.10 1.49 7.97 -51.93 -0.41 1.07 16 32 H 0.09 1.52 8.05 -51.93 -0.42 1.10 16 33 H 0.05 1.40 6.36 -51.93 -0.33 1.07 16 34 H 0.02 0.45 7.58 -51.93 -0.39 0.06 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.73 6.90 -51.93 -0.36 0.37 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.77 7.05 -51.93 -0.37 1.40 16 41 H 0.07 0.82 7.10 -51.93 -0.37 0.45 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -33.27 365.17 -8.81 -42.07 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.55 Total: -2.57 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: -1.55 Total: 12.56 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.01 Total: -56.76 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.68 Total: -16.35 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.52 Total: -1.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.27 -8.81 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157152331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.845 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds