Wall clock time and date at job start Tue Mar 31 2020 15:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.46988 * 2 1 4 4 C 1.34236 * 117.00209 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99369 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00156 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.47040 * 180.02562 * 6 4 3 8 8 C 1.46896 * 111.00152 * 71.83581 * 7 6 4 9 9 C 1.50706 * 109.47072 * 193.95490 * 8 7 6 10 10 H 1.08001 * 119.99913 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99959 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00139 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99950 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47266 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47474 * 119.99603 * 13 11 9 16 16 H 1.48500 * 109.46557 * 239.99562 * 13 11 9 17 17 C 1.38540 * 111.00172 * 195.79472 * 7 6 4 18 18 N 1.32984 * 120.51882 * 295.62177 * 17 7 6 19 19 C 1.31872 * 120.67270 * 180.02562 * 18 17 7 20 20 Cl 1.73599 * 119.10344 * 179.97438 * 19 18 17 21 21 N 1.31925 * 121.79617 * 359.97438 * 19 18 17 22 22 C 1.32536 * 120.99362 * 0.02562 * 21 19 18 23 23 C 1.50707 * 120.38830 * 179.97438 * 22 21 19 24 24 C 1.38112 * 119.22012 * 359.97438 * 22 21 19 25 25 C 1.50704 * 120.82173 * 179.72882 * 24 22 21 26 26 H 1.09007 * 109.47199 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46914 * 299.99454 * 1 2 3 28 28 H 1.08999 * 109.47167 * 59.99774 * 1 2 3 29 29 H 1.09000 * 109.46914 * 240.00546 * 2 1 3 30 30 H 1.08993 * 109.47533 * 120.00456 * 2 1 3 31 31 H 1.08996 * 109.47635 * 59.99502 * 6 4 3 32 32 H 1.09004 * 109.46546 * 299.99917 * 6 4 3 33 33 H 1.09001 * 109.47723 * 313.95468 * 8 7 6 34 34 H 1.09004 * 109.47070 * 73.95936 * 8 7 6 35 35 H 0.97000 * 120.00552 * 180.02562 * 12 11 9 36 36 H 1.08999 * 109.47017 * 270.01628 * 23 22 21 37 37 H 1.08997 * 109.46887 * 30.02473 * 23 22 21 38 38 H 1.09006 * 109.46577 * 150.02052 * 23 22 21 39 39 H 1.09004 * 109.46672 * 85.11785 * 25 24 22 40 40 H 1.08995 * 109.47215 * 205.11957 * 25 24 22 41 41 H 1.09001 * 109.46719 * 325.12112 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 7 5.3877 2.8606 -0.0014 8 6 5.8899 2.4071 -1.3052 9 6 7.3387 2.0130 -1.1760 10 1 7.8367 2.0919 -0.2209 11 6 8.0288 1.5526 -2.2773 12 7 7.4225 1.4570 -3.4405 13 14 9.8244 1.0634 -2.1170 14 1 10.2684 1.2624 -0.7140 15 1 9.9834 -0.3654 -2.4889 16 1 10.6492 1.9049 -3.0209 17 6 5.9489 4.0772 0.3511 18 7 5.7835 5.1465 -0.4219 19 6 6.3168 6.3059 -0.0896 20 17 6.0756 7.6752 -1.1291 21 7 7.0286 6.4535 1.0112 22 6 7.2368 5.4334 1.8314 23 6 8.0526 5.6173 3.0851 24 6 6.6972 4.1999 1.5235 25 6 6.9163 3.0139 2.4272 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.5852 3.4691 0.8904 32 1 3.5843 3.4700 -0.8896 33 1 5.3082 1.5482 -1.6400 34 1 5.7964 3.2146 -2.0314 35 1 7.9078 1.1327 -4.2152 36 1 9.1021 5.4184 2.8680 37 1 7.9431 6.6410 3.4429 38 1 7.7026 4.9252 3.8511 39 1 6.1687 3.0187 3.2205 40 1 6.8262 2.0947 1.8486 41 1 7.9123 3.0709 2.8663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157152331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:49 Heat of formation + Delta-G solvation = -53.450640 kcal Electronic energy + Delta-G solvation = -26234.796884 eV Core-core repulsion = 22368.671515 eV Total energy + Delta-G solvation = -3866.125369 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.46650 -41.46280 -38.89679 -37.94622 -37.36676 -35.54177 -34.87599 -33.71018 -32.65792 -30.27137 -30.04753 -28.70377 -27.16550 -24.91473 -24.19546 -23.66948 -22.68472 -21.68952 -19.42405 -19.06295 -18.36448 -17.93642 -17.71055 -17.42595 -16.74703 -16.56131 -16.04152 -15.60631 -15.45139 -15.15910 -14.75949 -14.35997 -14.33226 -14.16600 -13.82397 -13.63777 -13.56899 -13.51347 -13.28962 -12.89405 -12.81737 -12.70888 -12.65577 -12.53507 -12.48747 -12.48120 -12.17502 -12.06719 -11.58621 -11.51139 -11.43296 -11.29947 -10.69839 -10.45068 -9.95282 -9.74019 -8.25611 -6.34055 -0.31058 -0.10666 0.35350 1.18775 1.34829 1.35876 1.46717 1.49527 2.32977 2.44452 2.66502 3.01804 3.09769 3.57363 3.67080 3.76810 3.95521 3.99149 4.03404 4.10056 4.12651 4.19629 4.36713 4.74156 4.78412 4.79734 4.84715 4.88710 4.93818 4.94177 5.04617 5.12333 5.13866 5.24156 5.42070 5.45991 5.57992 5.81223 5.85229 6.06471 6.21490 6.74512 6.78351 6.82778 7.33152 8.86524 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.007765 B = 0.005393 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3605.196952 B = 5190.338712 C = 6873.762374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.361 6.361 4 C 0.466 3.534 5 O -0.508 6.508 6 C 0.070 3.930 7 N -0.469 5.469 8 C 0.217 3.783 9 C -0.516 4.516 10 H 0.065 0.935 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.963 3.037 14 H -0.257 1.257 15 H -0.277 1.277 16 H -0.282 1.282 17 C 0.366 3.634 18 N -0.559 5.559 19 C 0.354 3.646 20 Cl 0.018 6.982 21 N -0.520 5.520 22 C 0.183 3.817 23 C -0.099 4.099 24 C -0.155 4.155 25 C -0.095 4.095 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.019 0.981 34 H -0.020 1.020 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 5.122 14.410 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.308 3.692 5 O -0.394 6.394 6 C -0.058 4.058 7 N -0.192 5.192 8 C 0.093 3.907 9 C -0.554 4.554 10 H 0.083 0.917 11 C -0.195 4.195 12 N -0.572 5.572 13 Si 0.788 3.212 14 H -0.181 1.181 15 H -0.202 1.202 16 H -0.208 1.208 17 C 0.131 3.869 18 N -0.280 5.280 19 C 0.058 3.942 20 Cl 0.046 6.954 21 N -0.239 5.239 22 C 0.037 3.963 23 C -0.155 4.155 24 C -0.161 4.161 25 C -0.152 4.152 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.101 0.899 33 H 0.037 0.963 34 H -0.002 1.002 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.620 5.261 13.889 16.693 hybrid contribution 0.592 -0.519 -1.391 1.598 sum -7.028 4.742 12.498 15.102 Atomic orbital electron populations 1.21812 0.89721 1.04474 1.03835 1.23305 0.97393 0.79091 1.02325 1.86457 1.23201 1.33945 1.84230 1.23446 0.80900 0.92305 0.72545 1.90729 1.60867 1.43469 1.44360 1.21521 0.87426 0.91110 1.05759 1.59914 1.04556 1.19973 1.34790 1.19514 0.95831 0.93456 0.81880 1.21332 0.95507 1.42951 0.95622 0.91679 1.25851 1.03209 0.95681 0.94759 1.70086 1.38540 1.47752 1.00839 0.85418 0.79075 0.77921 0.78830 1.18063 1.20231 1.20793 1.19980 0.91426 0.86363 0.89123 1.67872 1.25471 1.00057 1.34601 1.22767 0.93233 0.88102 0.90075 1.98389 1.95101 1.38180 1.63749 1.67760 1.16601 1.35298 1.04213 1.22225 0.92286 0.86140 0.95601 1.20977 0.98818 1.05649 0.90095 1.21639 0.98486 0.98880 0.97100 1.20682 1.03619 0.93495 0.97452 0.88005 0.90634 0.91517 0.92491 0.90965 0.84663 0.89899 0.96325 1.00190 0.92764 0.88277 0.88643 0.86931 0.88383 0.91806 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 10.29 71.98 0.74 -1.56 16 2 C 0.05 1.31 6.19 71.98 0.45 1.75 16 3 O -0.36 -11.06 10.22 -51.47 -0.53 -11.59 16 4 C 0.47 17.33 7.55 71.24 0.54 17.87 16 5 O -0.51 -22.87 14.70 21.96 0.32 -22.55 16 6 C 0.07 2.51 5.40 85.56 0.46 2.97 16 7 N -0.47 -20.27 3.10 -709.97 -2.20 -22.47 16 8 C 0.22 11.86 4.26 85.56 0.36 12.23 16 9 C -0.52 -29.69 8.80 25.60 0.23 -29.46 16 10 H 0.07 3.63 7.38 -2.91 -0.02 3.61 16 11 C 0.00 0.19 5.46 84.66 0.46 0.65 16 12 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 13 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 14 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 C 0.37 14.80 4.62 133.16 0.61 15.42 16 18 N -0.56 -23.49 9.65 -188.31 -1.82 -25.31 16 19 C 0.35 13.33 8.18 180.82 1.48 14.81 16 20 Cl 0.02 0.59 29.27 -2.72 -0.08 0.51 16 21 N -0.52 -17.56 10.34 -179.12 -1.85 -19.41 16 22 C 0.18 5.32 6.81 42.42 0.29 5.61 16 23 C -0.10 -1.71 9.47 71.24 0.67 -1.04 16 24 C -0.16 -5.12 5.93 -19.56 -0.12 -5.24 16 25 C -0.10 -2.55 8.97 71.24 0.64 -1.91 16 26 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 30 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 31 H 0.14 3.89 7.97 -2.39 -0.02 3.87 16 32 H 0.08 3.05 8.05 -2.38 -0.02 3.03 16 33 H 0.02 1.13 6.36 -2.39 -0.02 1.11 16 34 H -0.02 -1.19 7.58 -2.38 -0.02 -1.21 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.11 1.35 6.90 -2.38 -0.02 1.33 16 39 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.06 2.22 7.05 -2.39 -0.02 2.20 16 41 H 0.09 1.98 7.10 -2.39 -0.02 1.96 16 Total: -1.00 -75.81 365.17 4.03 -71.78 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.05 Total: 7.00 kcal Atomic # 6 Polarization: 25.28 SS G_CDS: 6.82 Total: 32.10 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -5.58 Total: -124.69 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.20 Total: -34.14 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.08 Total: 0.51 kcal Total: -75.81 4.03 -71.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157152331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.326 kcal (2) G-P(sol) polarization free energy of solvation -75.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds