Wall clock time and date at job start Tue Mar 31 2020 15:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45198 * 109.47000 * 2 1 4 4 C 1.34230 * 116.99340 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00644 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99630 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47063 * 174.80928 * 6 4 3 8 8 C 1.46897 * 111.00348 * 289.31033 * 7 6 4 9 9 C 1.50701 * 109.47610 * 160.44881 * 8 7 6 10 10 H 1.08003 * 119.99728 * 355.56826 * 9 8 7 11 11 C 1.37875 * 120.00485 * 175.57525 * 9 8 7 12 12 N 1.31508 * 120.00213 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99864 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.46935 * 90.00235 * 13 11 9 15 15 H 1.48497 * 109.47182 * 210.00319 * 13 11 9 16 16 H 1.48496 * 109.47055 * 330.00639 * 13 11 9 17 17 C 1.39056 * 110.99965 * 165.35418 * 7 6 4 18 18 N 1.32625 * 120.10419 * 65.09364 * 17 7 6 19 19 C 1.32254 * 119.93053 * 180.25032 * 18 17 7 20 20 C 1.50703 * 119.93211 * 179.72415 * 19 18 17 21 21 C 1.38136 * 120.13574 * 359.45464 * 19 18 17 22 22 C 1.50700 * 119.89952 * 180.27473 * 21 19 18 23 23 N 1.32294 * 120.20572 * 0.24858 * 21 19 18 24 24 C 1.32016 * 120.06817 * 0.02562 * 23 21 19 25 25 Cl 1.73599 * 120.06879 * 179.97438 * 24 23 21 26 26 H 1.09004 * 109.46715 * 299.99929 * 1 2 3 27 27 H 1.08996 * 109.47179 * 59.99249 * 1 2 3 28 28 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46715 * 240.00071 * 2 1 3 30 30 H 1.08996 * 109.46817 * 120.00347 * 2 1 3 31 31 H 1.09006 * 109.46786 * 54.81183 * 6 4 3 32 32 H 1.08998 * 109.47850 * 294.81398 * 6 4 3 33 33 H 1.09011 * 109.46982 * 280.44489 * 8 7 6 34 34 H 1.09004 * 109.47324 * 40.44265 * 8 7 6 35 35 H 0.97003 * 120.00040 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.47257 * 269.72559 * 20 19 18 37 37 H 1.08997 * 109.47377 * 29.72808 * 20 19 18 38 38 H 1.09002 * 109.46918 * 149.72692 * 20 19 18 39 39 H 1.09002 * 109.47413 * 89.99557 * 22 21 19 40 40 H 1.09004 * 109.47224 * 209.99784 * 22 21 19 41 41 H 1.08999 * 109.47351 * 329.99570 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3825 2.8626 0.1260 8 6 5.7732 2.4287 1.4740 9 6 7.1863 1.9058 1.4436 10 1 7.7139 1.8298 0.5043 11 6 7.8056 1.5243 2.6149 12 7 9.0389 1.0685 2.5884 13 14 6.8933 1.6563 4.2397 14 1 6.1656 0.3889 4.5030 15 1 7.8653 1.9056 5.3343 16 1 5.9238 2.7791 4.1732 17 6 5.9733 4.0793 -0.1967 18 7 5.7492 5.1480 0.5561 19 6 6.3089 6.3047 0.2431 20 6 6.0494 7.5205 1.0949 21 6 7.1355 6.3994 -0.8596 22 6 7.7754 7.7186 -1.2077 23 7 7.3674 5.3354 -1.6108 24 6 6.8086 4.1781 -1.3090 25 17 7.1124 2.7820 -2.2952 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.5120 3.4999 0.8394 32 1 3.6617 3.4374 -0.9332 33 1 5.7134 3.2742 2.1594 34 1 5.1009 1.6396 1.8109 35 1 9.4747 0.8005 3.4125 36 1 5.1771 8.0517 0.7138 37 1 5.8654 7.2110 2.1237 38 1 6.9179 8.1784 1.0633 39 1 8.7394 7.7987 -0.7052 40 1 7.9219 7.7780 -2.2862 41 1 7.1279 8.5333 -0.8836 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:52 Heat of formation + Delta-G solvation = -51.773201 kcal Electronic energy + Delta-G solvation = -26236.456856 eV Core-core repulsion = 22370.404226 eV Total energy + Delta-G solvation = -3866.052630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.50959 -41.49172 -38.92332 -37.70900 -37.39711 -35.40953 -34.84308 -34.04139 -32.70480 -30.68692 -29.77727 -29.10006 -26.88797 -24.63261 -24.22506 -23.86859 -22.65499 -21.70016 -19.50441 -19.00597 -18.80322 -17.84982 -17.65500 -17.42989 -17.06753 -16.67601 -16.21783 -15.65942 -15.36757 -14.90695 -14.62051 -14.42837 -14.14922 -14.09368 -14.02088 -13.79672 -13.71538 -13.58789 -13.51298 -12.91251 -12.87357 -12.75620 -12.57283 -12.51920 -12.46112 -12.43140 -12.21215 -12.03312 -11.74094 -11.67334 -11.51038 -11.40638 -10.82552 -10.43764 -9.72395 -9.57270 -8.29957 -6.32167 -0.45852 -0.08543 0.79492 1.18578 1.26416 1.28334 1.37374 1.45972 2.28857 2.34972 2.56171 3.00477 3.05883 3.25316 3.46545 3.73878 3.90722 3.93585 4.00305 4.06457 4.10931 4.16440 4.36147 4.58856 4.66097 4.75868 4.78196 4.80821 4.83937 4.85092 4.93380 4.94150 5.12458 5.13247 5.37610 5.42253 5.46175 5.60691 5.96266 6.15681 6.39360 6.58581 6.74797 6.80880 7.28404 8.86714 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.008589 B = 0.005591 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.269299 B = 5006.730046 C = 6378.784172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.359 6.359 4 C 0.462 3.538 5 O -0.508 6.508 6 C 0.071 3.929 7 N -0.471 5.471 8 C 0.185 3.815 9 C -0.508 4.508 10 H 0.046 0.954 11 C 0.012 3.988 12 N -0.944 5.944 13 Si 0.933 3.067 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.248 1.248 17 C 0.277 3.723 18 N -0.467 5.467 19 C 0.090 3.910 20 C -0.098 4.098 21 C 0.084 3.916 22 C -0.096 4.096 23 N -0.448 5.448 24 C 0.133 3.867 25 Cl -0.012 7.012 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.012 0.988 34 H 0.028 0.972 35 H 0.266 0.734 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.952 13.968 -5.544 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.303 3.697 5 O -0.395 6.395 6 C -0.057 4.057 7 N -0.195 5.195 8 C 0.060 3.940 9 C -0.547 4.547 10 H 0.064 0.936 11 C -0.185 4.185 12 N -0.585 5.585 13 Si 0.757 3.243 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.172 1.172 17 C 0.046 3.954 18 N -0.186 5.186 19 C -0.054 4.054 20 C -0.155 4.155 21 C -0.058 4.058 22 C -0.153 4.153 23 N -0.166 5.166 24 C -0.034 4.034 25 Cl 0.017 6.983 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.149 0.851 33 H 0.029 0.971 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.449 13.022 -5.857 20.314 hybrid contribution 0.202 -0.851 1.063 1.377 sum -14.247 12.171 -4.794 19.341 Atomic orbital electron populations 1.21805 0.89623 1.04427 1.03914 1.23307 0.97450 0.79200 1.02284 1.86456 1.23116 1.33784 1.84239 1.23572 0.80931 0.92505 0.72662 1.90762 1.60932 1.43553 1.44233 1.21584 0.86842 0.90967 1.06267 1.59546 1.06789 1.21429 1.31780 1.20035 0.96028 0.94537 0.83408 1.21166 0.97507 1.41503 0.94518 0.93612 1.25710 0.95539 0.94621 1.02627 1.70041 1.14021 1.45528 1.28884 0.85921 0.79248 0.79758 0.79393 1.19487 1.20147 1.17159 1.20010 0.95358 0.89243 0.90783 1.68493 1.22957 0.99620 1.27563 1.22906 0.92887 0.94612 0.95020 1.20959 1.05438 0.91013 0.98083 1.22875 0.95411 0.95995 0.91546 1.20948 1.01667 0.88539 1.04141 1.67687 1.20153 0.98099 1.30671 1.22490 0.96836 0.90364 0.93740 1.98392 1.94598 1.36766 1.68566 0.91150 0.90794 0.88164 0.91507 0.92143 0.88249 0.85089 0.97072 0.95439 0.92512 0.86981 0.90812 0.86863 0.88646 0.89689 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.29 71.98 0.74 -1.46 16 2 C 0.05 1.25 6.19 71.98 0.45 1.70 16 3 O -0.36 -10.59 10.22 -51.42 -0.53 -11.11 16 4 C 0.46 16.84 7.36 71.24 0.52 17.36 16 5 O -0.51 -23.12 14.97 21.97 0.33 -22.79 16 6 C 0.07 2.44 5.39 85.56 0.46 2.90 16 7 N -0.47 -20.74 3.45 -709.91 -2.45 -23.19 16 8 C 0.19 9.42 3.34 85.56 0.29 9.70 16 9 C -0.51 -31.00 9.51 25.60 0.24 -30.76 16 10 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 11 C 0.01 0.76 5.47 84.66 0.46 1.22 16 12 N -0.94 -61.38 13.96 21.45 0.30 -61.08 16 13 Si 0.93 45.98 27.56 68.60 1.89 47.87 16 14 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.25 -11.36 6.42 99.48 0.64 -10.72 16 17 C 0.28 11.48 4.85 133.06 0.65 12.12 16 18 N -0.47 -17.10 9.54 -180.63 -1.72 -18.83 16 19 C 0.09 2.53 6.78 42.47 0.29 2.82 16 20 C -0.10 -1.60 9.36 71.24 0.67 -0.94 16 21 C 0.08 2.34 6.78 42.46 0.29 2.63 16 22 C -0.10 -1.51 9.36 71.24 0.67 -0.84 16 23 N -0.45 -16.17 10.40 -173.78 -1.81 -17.98 16 24 C 0.13 5.48 7.31 84.96 0.62 6.10 16 25 Cl -0.01 -0.49 28.62 -2.72 -0.08 -0.57 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 31 H 0.10 3.08 8.07 -2.38 -0.02 3.06 16 32 H 0.13 3.76 7.99 -2.39 -0.02 3.74 16 33 H 0.01 0.58 6.17 -2.38 -0.01 0.57 16 34 H 0.03 1.44 6.11 -2.38 -0.01 1.42 16 35 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 36 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 1.17 6.68 -2.39 -0.02 1.15 16 39 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.12 0.97 6.68 -2.39 -0.02 0.95 16 Total: -1.00 -82.82 362.69 3.26 -79.56 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.98 Total: 5.56 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 6.34 Total: 22.57 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -5.68 Total: -121.08 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.20 Total: -33.90 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.89 Total: 47.87 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -82.82 3.26 -79.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.784 kcal (2) G-P(sol) polarization free energy of solvation -82.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds