Wall clock time and date at job start Tue Mar 31 2020 15:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45201 * 109.47040 * 2 1 4 4 C 1.34226 * 116.99972 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00222 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99962 * 180.02562 * 4 3 2 7 7 N 1.46911 * 109.47020 * 173.86601 * 6 4 3 8 8 C 1.46895 * 110.99520 * 158.94445 * 7 6 4 9 9 C 1.50707 * 109.47328 * 287.23984 * 8 7 6 10 10 H 1.07998 * 119.99544 * 356.08183 * 9 8 7 11 11 C 1.37868 * 119.99906 * 176.07760 * 9 8 7 12 12 N 1.31513 * 120.00550 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99968 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47070 * 90.00014 * 13 11 9 15 15 H 1.48496 * 109.47475 * 210.00402 * 13 11 9 16 16 H 1.48505 * 109.47088 * 330.00184 * 13 11 9 17 17 C 1.39808 * 110.99885 * 282.89805 * 7 6 4 18 18 C 1.39164 * 120.87792 * 116.04782 * 17 7 6 19 19 C 1.50696 * 120.48416 * 359.97438 * 18 17 7 20 20 N 1.32320 * 119.02502 * 180.02562 * 18 17 7 21 21 C 1.31776 * 120.92693 * 0.02562 * 20 18 17 22 22 C 1.50703 * 119.02684 * 180.02562 * 21 20 18 23 23 N 1.31796 * 121.94543 * 359.97438 * 21 20 18 24 24 C 1.32365 * 120.87339 * 0.02562 * 23 21 20 25 25 Cl 1.73601 * 120.51014 * 180.02562 * 24 23 21 26 26 H 1.09004 * 109.47612 * 299.99867 * 1 2 3 27 27 H 1.08999 * 109.47235 * 60.00392 * 1 2 3 28 28 H 1.09001 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47789 * 239.99983 * 2 1 3 30 30 H 1.08999 * 109.47235 * 119.99608 * 2 1 3 31 31 H 1.08992 * 109.47204 * 53.86594 * 6 4 3 32 32 H 1.09008 * 109.46979 * 293.86010 * 6 4 3 33 33 H 1.08998 * 109.47806 * 47.24326 * 8 7 6 34 34 H 1.09002 * 109.46877 * 167.24498 * 8 7 6 35 35 H 0.96995 * 120.00621 * 179.97438 * 12 11 9 36 36 H 1.08999 * 109.46831 * 270.01893 * 19 18 17 37 37 H 1.08999 * 109.47369 * 30.02057 * 19 18 17 38 38 H 1.09007 * 109.46791 * 150.02868 * 19 18 17 39 39 H 1.09005 * 109.46676 * 269.97617 * 22 21 20 40 40 H 1.09001 * 109.47257 * 29.97392 * 22 21 20 41 41 H 1.09001 * 109.47064 * 149.97813 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9206 2.9375 0.0012 7 7 5.3803 2.8636 0.1497 8 6 6.0213 4.0943 -0.3322 9 6 5.9621 4.1355 -1.8375 10 1 5.5521 3.2995 -2.3848 11 6 6.4312 5.2402 -2.5159 12 7 6.9308 6.2580 -1.8495 13 14 6.3570 5.2916 -4.3818 14 1 5.0653 5.8862 -4.8097 15 1 7.4776 6.1172 -4.8993 16 1 6.4693 3.9119 -4.9198 17 6 5.7363 2.5992 1.4756 18 6 6.3922 1.4205 1.8176 19 6 6.7328 0.4010 0.7613 20 7 6.7114 1.2075 3.0839 21 6 6.4164 2.0924 4.0147 22 6 6.8006 1.8064 5.4436 23 7 5.7962 3.2206 3.7328 24 6 5.4425 3.5092 2.4904 25 17 4.6264 4.9984 2.1296 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.4992 3.5046 0.8311 32 1 3.6756 3.4324 -0.9387 33 1 5.4992 4.9598 0.0757 34 1 7.0622 4.1123 -0.0090 35 1 7.2612 7.0351 -2.3268 36 1 5.9085 -0.3047 0.6584 37 1 6.9000 0.9056 -0.1902 38 1 7.6361 -0.1354 1.0520 39 1 5.9871 1.2767 5.9394 40 1 7.6997 1.1904 5.4618 41 1 6.9928 2.7452 5.9630 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:55 Heat of formation + Delta-G solvation = -31.953662 kcal Electronic energy + Delta-G solvation = -26653.607461 eV Core-core repulsion = 22788.414272 eV Total energy + Delta-G solvation = -3865.193190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14328 -40.04755 -37.55608 -36.55430 -35.89193 -34.05244 -32.92480 -32.09876 -31.66857 -28.93490 -28.34525 -27.84154 -25.35222 -23.40389 -23.16413 -22.03510 -21.36619 -20.44354 -18.16397 -17.33716 -16.82415 -16.43790 -16.26328 -15.90145 -15.51875 -15.14415 -14.69743 -14.19745 -13.88364 -13.66872 -13.42016 -13.02383 -12.92917 -12.81452 -12.69078 -12.34982 -12.33915 -12.14141 -11.98578 -11.66380 -11.64865 -11.49782 -11.28393 -11.12578 -10.94424 -10.71527 -10.70487 -10.41582 -10.16571 -9.96625 -9.88980 -9.59954 -9.20599 -8.68741 -8.55222 -7.67130 -6.14231 -4.17939 0.94971 1.18502 1.85843 2.58665 2.81526 3.25864 3.33257 3.37091 3.77197 4.05072 4.25748 4.32888 4.47236 4.80542 4.88143 4.90154 5.04919 5.21064 5.22445 5.33971 5.41956 5.52524 5.58772 5.65360 5.70299 5.74713 5.82821 5.87964 5.95236 6.15884 6.24806 6.30593 6.60905 6.79710 6.84187 7.04882 7.10925 7.58109 7.63928 7.92004 8.16518 8.20088 8.27374 8.88553 9.46890 10.95549 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.008524 B = 0.005951 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.121986 B = 4704.344759 C = 6468.504745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.365 6.365 4 C 0.458 3.542 5 O -0.490 6.490 6 C 0.064 3.936 7 N -0.471 5.471 8 C 0.186 3.814 9 C -0.515 4.515 10 H 0.067 0.933 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.899 3.101 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.016 3.984 18 C 0.224 3.776 19 C -0.091 4.091 20 N -0.519 5.519 21 C 0.319 3.681 22 C -0.079 4.079 23 N -0.522 5.522 24 C 0.187 3.813 25 Cl -0.003 7.003 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.029 0.971 34 H 0.033 0.967 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.808 -9.551 8.627 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.282 6.282 4 C 0.300 3.700 5 O -0.375 6.375 6 C -0.064 4.064 7 N -0.194 5.194 8 C 0.065 3.935 9 C -0.554 4.554 10 H 0.085 0.915 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.085 4.085 18 C 0.077 3.923 19 C -0.148 4.148 20 N -0.236 5.236 21 C 0.052 3.948 22 C -0.137 4.137 23 N -0.241 5.241 24 C 0.012 3.988 25 Cl 0.026 6.974 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.156 0.844 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.170 -10.109 9.178 15.422 hybrid contribution -0.550 1.142 -1.370 1.867 sum -7.720 -8.967 7.808 14.177 Atomic orbital electron populations 1.21791 0.92986 1.02615 1.03466 1.22913 0.95049 0.80876 1.02297 1.86512 1.25263 1.31800 1.84636 1.24095 0.80031 0.93431 0.72436 1.90557 1.59912 1.42831 1.44243 1.21789 0.88554 0.89640 1.06412 1.59380 1.05658 1.42283 1.12063 1.20220 0.94186 0.82705 0.96439 1.21047 1.41647 1.02483 0.90206 0.91474 1.24947 0.95074 0.95315 0.98771 1.69950 1.40745 1.06567 1.35767 0.86483 0.77666 0.78198 0.85034 1.20586 1.21212 1.19660 1.20453 1.01971 0.94919 0.91169 1.21919 0.87325 0.91860 0.91173 1.20734 1.01740 0.96348 0.95951 1.68130 1.21750 1.32670 1.01024 1.23046 0.90354 0.84492 0.96951 1.20514 1.02607 1.03283 0.87301 1.67456 1.14645 1.21284 1.20700 1.23509 0.94676 0.89744 0.90834 1.98434 1.75677 1.30811 1.92510 0.91664 0.91431 0.90555 0.91285 0.91755 0.90682 0.84394 0.95301 0.94933 0.92667 0.88510 0.88312 0.91581 0.89848 0.89525 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 37.15 0.38 -0.96 16 2 C 0.06 0.75 6.19 37.15 0.23 0.98 16 3 O -0.36 -5.56 10.22 -39.25 -0.40 -5.96 16 4 C 0.46 8.00 7.76 36.01 0.28 8.28 16 5 O -0.49 -9.10 12.43 -18.75 -0.23 -9.33 16 6 C 0.06 1.18 5.05 -4.97 -0.03 1.15 16 7 N -0.47 -9.74 3.03 -173.54 -0.53 -10.27 16 8 C 0.19 4.50 4.05 -4.98 -0.02 4.48 16 9 C -0.52 -13.38 8.34 -34.44 -0.29 -13.67 16 10 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -25.05 13.29 55.43 0.74 -24.32 16 13 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C 0.02 0.31 4.03 -83.43 -0.34 -0.03 16 18 C 0.22 4.18 6.55 -82.04 -0.54 3.65 16 19 C -0.09 -1.53 8.86 36.00 0.32 -1.21 16 20 N -0.52 -9.14 10.26 -6.86 -0.07 -9.21 16 21 C 0.32 5.27 7.64 -157.21 -1.20 4.07 16 22 C -0.08 -0.89 10.31 36.01 0.37 -0.52 16 23 N -0.52 -9.54 10.32 -7.71 -0.08 -9.62 16 24 C 0.19 3.62 6.87 -16.88 -0.12 3.50 16 25 Cl 0.00 -0.06 23.45 -51.86 -1.22 -1.27 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 30 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 31 H 0.08 1.33 5.28 -51.93 -0.27 1.06 16 32 H 0.14 2.60 7.15 -51.92 -0.37 2.23 16 33 H 0.03 0.72 5.35 -51.93 -0.28 0.44 16 34 H 0.03 0.88 7.96 -51.93 -0.41 0.46 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.10 1.64 6.27 -51.93 -0.33 1.31 16 37 H 0.10 1.83 7.54 -51.93 -0.39 1.44 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 354.19 15.07 5.34 5.34 Total: -1.00 -29.80 354.19 -7.92 -37.71 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.40 Total: 0.08 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -1.04 Total: 11.27 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.06 Total: -53.42 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.63 Total: -15.29 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.22 Total: -1.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.80 -7.92 -37.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.761 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds