Wall clock time and date at job start Tue Mar 31 2020 15:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45201 * 109.47040 * 2 1 4 4 C 1.34226 * 116.99972 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00222 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99962 * 180.02562 * 4 3 2 7 7 N 1.46911 * 109.47020 * 173.86601 * 6 4 3 8 8 C 1.46895 * 110.99520 * 158.94445 * 7 6 4 9 9 C 1.50707 * 109.47328 * 287.23984 * 8 7 6 10 10 H 1.07998 * 119.99544 * 356.08183 * 9 8 7 11 11 C 1.37868 * 119.99906 * 176.07760 * 9 8 7 12 12 N 1.31513 * 120.00550 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99968 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47070 * 90.00014 * 13 11 9 15 15 H 1.48496 * 109.47475 * 210.00402 * 13 11 9 16 16 H 1.48505 * 109.47088 * 330.00184 * 13 11 9 17 17 C 1.39808 * 110.99885 * 282.89805 * 7 6 4 18 18 C 1.39164 * 120.87792 * 116.04782 * 17 7 6 19 19 C 1.50696 * 120.48416 * 359.97438 * 18 17 7 20 20 N 1.32320 * 119.02502 * 180.02562 * 18 17 7 21 21 C 1.31776 * 120.92693 * 0.02562 * 20 18 17 22 22 C 1.50703 * 119.02684 * 180.02562 * 21 20 18 23 23 N 1.31796 * 121.94543 * 359.97438 * 21 20 18 24 24 C 1.32365 * 120.87339 * 0.02562 * 23 21 20 25 25 Cl 1.73601 * 120.51014 * 180.02562 * 24 23 21 26 26 H 1.09004 * 109.47612 * 299.99867 * 1 2 3 27 27 H 1.08999 * 109.47235 * 60.00392 * 1 2 3 28 28 H 1.09001 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47789 * 239.99983 * 2 1 3 30 30 H 1.08999 * 109.47235 * 119.99608 * 2 1 3 31 31 H 1.08992 * 109.47204 * 53.86594 * 6 4 3 32 32 H 1.09008 * 109.46979 * 293.86010 * 6 4 3 33 33 H 1.08998 * 109.47806 * 47.24326 * 8 7 6 34 34 H 1.09002 * 109.46877 * 167.24498 * 8 7 6 35 35 H 0.96995 * 120.00621 * 179.97438 * 12 11 9 36 36 H 1.08999 * 109.46831 * 270.01893 * 19 18 17 37 37 H 1.08999 * 109.47369 * 30.02057 * 19 18 17 38 38 H 1.09007 * 109.46791 * 150.02868 * 19 18 17 39 39 H 1.09005 * 109.46676 * 269.97617 * 22 21 20 40 40 H 1.09001 * 109.47257 * 29.97392 * 22 21 20 41 41 H 1.09001 * 109.47064 * 149.97813 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9206 2.9375 0.0012 7 7 5.3803 2.8636 0.1497 8 6 6.0213 4.0943 -0.3322 9 6 5.9621 4.1355 -1.8375 10 1 5.5521 3.2995 -2.3848 11 6 6.4312 5.2402 -2.5159 12 7 6.9308 6.2580 -1.8495 13 14 6.3570 5.2916 -4.3818 14 1 5.0653 5.8862 -4.8097 15 1 7.4776 6.1172 -4.8993 16 1 6.4693 3.9119 -4.9198 17 6 5.7363 2.5992 1.4756 18 6 6.3922 1.4205 1.8176 19 6 6.7328 0.4010 0.7613 20 7 6.7114 1.2075 3.0839 21 6 6.4164 2.0924 4.0147 22 6 6.8006 1.8064 5.4436 23 7 5.7962 3.2206 3.7328 24 6 5.4425 3.5092 2.4904 25 17 4.6264 4.9984 2.1296 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.4992 3.5046 0.8311 32 1 3.6756 3.4324 -0.9387 33 1 5.4992 4.9598 0.0757 34 1 7.0622 4.1123 -0.0090 35 1 7.2612 7.0351 -2.3268 36 1 5.9085 -0.3047 0.6584 37 1 6.9000 0.9056 -0.1902 38 1 7.6361 -0.1354 1.0520 39 1 5.9871 1.2767 5.9394 40 1 7.6997 1.1904 5.4618 41 1 6.9928 2.7452 5.9630 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:54 Heat of formation + Delta-G solvation = -49.026247 kcal Electronic energy + Delta-G solvation = -26654.347784 eV Core-core repulsion = 22788.414272 eV Total energy + Delta-G solvation = -3865.933513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.56540 -41.37172 -39.04159 -38.00111 -37.28187 -35.48376 -34.81876 -33.47024 -32.64905 -30.16486 -30.00606 -29.37587 -26.94080 -24.88862 -24.34583 -23.52843 -22.73360 -21.86708 -19.62912 -18.70013 -18.52560 -17.94123 -17.66972 -17.29678 -16.97554 -16.59309 -16.44294 -15.58475 -15.18607 -15.06109 -14.71226 -14.53931 -14.13603 -14.04616 -13.95728 -13.64965 -13.54461 -13.37096 -13.29006 -13.14610 -12.87530 -12.79437 -12.73588 -12.59739 -12.48835 -12.38468 -12.23271 -12.06225 -11.57653 -11.49570 -11.34057 -11.25180 -10.78132 -10.57124 -10.14046 -9.31541 -8.18709 -6.28948 -0.49194 -0.25543 0.38596 1.19804 1.44607 1.46144 1.53942 1.57765 2.36961 2.41439 2.74678 2.92523 2.97248 3.14968 3.34186 3.77660 3.95547 4.01873 4.08893 4.10778 4.26662 4.34775 4.39404 4.68221 4.69185 4.69817 4.81393 4.83284 4.89574 4.92681 4.99637 5.13154 5.15867 5.20202 5.36420 5.51870 5.54288 5.67580 5.86410 5.98608 6.37605 6.81246 6.83139 6.83793 7.39980 8.91229 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.008524 B = 0.005951 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.121986 B = 4704.344759 C = 6468.504745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.464 3.536 5 O -0.503 6.503 6 C 0.063 3.937 7 N -0.471 5.471 8 C 0.204 3.796 9 C -0.522 4.522 10 H 0.066 0.934 11 C 0.014 3.986 12 N -0.927 5.927 13 Si 0.963 3.037 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.267 1.267 17 C -0.010 4.010 18 C 0.218 3.782 19 C -0.080 4.080 20 N -0.521 5.521 21 C 0.317 3.683 22 C -0.076 4.076 23 N -0.532 5.532 24 C 0.180 3.820 25 Cl -0.004 7.004 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.022 0.978 34 H -0.003 1.003 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.653 -10.969 9.107 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.283 6.283 4 C 0.306 3.694 5 O -0.390 6.390 6 C -0.065 4.065 7 N -0.193 5.193 8 C 0.081 3.919 9 C -0.561 4.561 10 H 0.084 0.916 11 C -0.186 4.186 12 N -0.566 5.566 13 Si 0.788 3.212 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.192 1.192 17 C -0.111 4.111 18 C 0.072 3.928 19 C -0.137 4.137 20 N -0.237 5.237 21 C 0.051 3.949 22 C -0.134 4.134 23 N -0.250 5.250 24 C 0.005 3.995 25 Cl 0.025 6.975 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.149 0.851 33 H 0.039 0.961 34 H 0.015 0.985 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.044 -11.549 9.673 17.077 hybrid contribution -0.321 1.509 -1.400 2.083 sum -8.364 -10.039 8.274 15.466 Atomic orbital electron populations 1.21821 0.90290 1.04427 1.03626 1.23282 0.97116 0.79072 1.02451 1.86496 1.23661 1.34054 1.84079 1.23706 0.80816 0.92568 0.72291 1.90542 1.60473 1.43019 1.44991 1.21736 0.87540 0.90937 1.06258 1.59182 1.06729 1.40317 1.13098 1.19808 0.92370 0.84095 0.95625 1.21304 1.41145 1.02353 0.91262 0.91605 1.25738 0.94674 0.94948 1.03191 1.70067 1.41837 1.07206 1.37519 0.85476 0.77830 0.78240 0.79650 1.19596 1.21219 1.19167 1.20523 1.03770 0.96040 0.90762 1.22201 0.86712 0.91789 0.92136 1.20645 1.02675 0.95822 0.94592 1.68256 1.21927 1.32897 1.00640 1.24134 0.88496 0.83416 0.98827 1.20747 1.04076 1.04555 0.84016 1.67591 1.15374 1.22156 1.19918 1.23584 0.94784 0.89718 0.91396 1.98425 1.75659 1.30839 1.92616 0.91487 0.91275 0.87870 0.91149 0.91653 0.90089 0.85100 0.96060 0.98519 0.92633 0.88350 0.90311 0.89482 0.87536 0.87793 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 10.29 71.98 0.74 -1.49 16 2 C 0.05 1.22 6.19 71.98 0.45 1.67 16 3 O -0.37 -10.90 10.22 -51.38 -0.53 -11.42 16 4 C 0.46 16.18 7.76 71.24 0.55 16.73 16 5 O -0.50 -18.61 12.43 21.95 0.27 -18.34 16 6 C 0.06 2.36 5.05 85.56 0.43 2.80 16 7 N -0.47 -19.99 3.03 -702.96 -2.13 -22.12 16 8 C 0.20 10.21 4.05 85.56 0.35 10.56 16 9 C -0.52 -27.66 8.34 25.60 0.21 -27.45 16 10 H 0.07 3.44 7.81 -2.91 -0.02 3.41 16 11 C 0.01 0.74 5.46 84.65 0.46 1.20 16 12 N -0.93 -53.04 13.29 21.44 0.28 -52.76 16 13 Si 0.96 42.42 29.54 68.60 2.03 44.44 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 C -0.01 -0.41 4.03 38.38 0.15 -0.26 16 18 C 0.22 8.13 6.55 42.71 0.28 8.41 16 19 C -0.08 -2.70 8.86 71.23 0.63 -2.06 16 20 N -0.52 -17.70 10.26 -175.62 -1.80 -19.50 16 21 C 0.32 10.01 7.64 138.76 1.06 11.07 16 22 C -0.08 -1.51 10.31 71.24 0.73 -0.77 16 23 N -0.53 -19.05 10.32 -178.32 -1.84 -20.90 16 24 C 0.18 7.02 6.87 84.90 0.58 7.60 16 25 Cl 0.00 -0.16 23.45 -2.72 -0.06 -0.22 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 30 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 31 H 0.08 2.93 5.28 -2.39 -0.01 2.92 16 32 H 0.13 5.06 7.15 -2.38 -0.02 5.04 16 33 H 0.02 1.11 5.35 -2.39 -0.01 1.09 16 34 H 0.00 -0.19 7.96 -2.39 -0.02 -0.20 16 35 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.10 3.28 6.27 -2.39 -0.01 3.26 16 37 H 0.08 2.97 7.54 -2.39 -0.02 2.95 16 38 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 39 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -64.33 354.19 3.91 -60.41 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.06 Total: 12.41 kcal Atomic # 6 Polarization: 21.35 SS G_CDS: 6.64 Total: 27.99 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -5.49 Total: -115.28 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.25 Total: -29.76 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.06 Total: -0.22 kcal Total: -64.33 3.91 -60.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.388 kcal (2) G-P(sol) polarization free energy of solvation -64.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds