Wall clock time and date at job start Tue Mar 31 2020 15:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47324 * 2 1 4 4 C 1.34227 * 117.00485 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99589 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00557 * 180.02562 * 4 3 2 7 7 N 1.46502 * 109.47352 * 179.97438 * 6 4 3 8 8 C 1.46498 * 120.00034 * 269.99767 * 7 6 4 9 9 C 1.50697 * 109.47462 * 269.99927 * 8 7 6 10 10 H 1.07997 * 119.99669 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00177 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00003 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99877 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47557 * 89.99287 * 13 11 9 15 15 H 1.48501 * 109.46869 * 209.99792 * 13 11 9 16 16 H 1.48503 * 109.47065 * 329.99281 * 13 11 9 17 17 C 1.38461 * 119.99807 * 90.00008 * 7 6 4 18 18 N 1.32478 * 119.20412 * 359.97438 * 17 7 6 19 19 C 1.32281 * 120.75409 * 179.97438 * 18 17 7 20 20 C 1.50703 * 120.40980 * 180.02562 * 19 18 17 21 21 C 1.38705 * 119.18189 * 0.02562 * 19 18 17 22 22 Cl 1.73603 * 120.73229 * 179.72623 * 21 19 18 23 23 C 1.38691 * 118.53379 * 359.97438 * 21 19 18 24 24 C 1.50700 * 120.40928 * 180.02562 * 23 21 19 25 25 N 1.32284 * 119.18516 * 359.97438 * 23 21 19 26 26 H 1.09000 * 109.46940 * 59.99549 * 1 2 3 27 27 H 1.08991 * 109.46887 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46675 * 300.00111 * 1 2 3 29 29 H 1.09004 * 109.47012 * 240.00136 * 2 1 3 30 30 H 1.08999 * 109.47547 * 119.99999 * 2 1 3 31 31 H 1.09009 * 109.47115 * 59.99627 * 6 4 3 32 32 H 1.08994 * 109.47273 * 299.99649 * 6 4 3 33 33 H 1.09006 * 109.47035 * 30.00169 * 8 7 6 34 34 H 1.09002 * 109.47275 * 149.99887 * 8 7 6 35 35 H 0.97003 * 119.99747 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.47035 * 269.97766 * 20 19 18 37 37 H 1.08995 * 109.47029 * 29.97935 * 20 19 18 38 38 H 1.08999 * 109.47097 * 149.97420 * 20 19 18 39 39 H 1.08994 * 109.47873 * 89.99926 * 24 23 21 40 40 H 1.09005 * 109.46882 * 209.99723 * 24 23 21 41 41 H 1.09004 * 109.47205 * 329.99327 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3838 2.8607 -0.0001 8 6 6.1154 2.8219 1.2685 9 6 6.4407 4.2274 1.7041 10 1 6.1328 5.0657 1.0969 11 6 7.1304 4.4430 2.8784 12 7 7.4146 5.6696 3.2583 13 14 7.6622 2.9929 3.9290 14 1 9.0140 2.5457 3.5076 15 1 7.6986 3.4025 5.3559 16 1 6.6964 1.8777 3.7587 17 6 6.0751 2.8250 -1.1993 18 7 5.3976 2.8604 -2.3372 19 6 6.0268 2.8284 -3.5003 20 6 5.2484 2.8698 -4.7901 21 6 7.4119 2.7564 -3.5182 22 17 8.2782 2.7051 -5.0218 23 6 8.0891 2.7209 -2.3084 24 6 9.5938 2.6432 -2.2785 25 7 7.3980 2.7572 -1.1810 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.5852 3.4691 0.8905 32 1 3.5845 3.4700 -0.8895 33 1 5.5003 2.3392 2.0281 34 1 7.0396 2.2589 1.1379 35 1 7.9002 5.8212 4.0842 36 1 5.0077 1.8535 -5.1019 37 1 4.3266 3.4318 -4.6403 38 1 5.8479 3.3540 -5.5610 39 1 10.0097 3.6506 -2.2709 40 1 9.9124 2.1119 -1.3817 41 1 9.9477 2.1106 -3.1613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:57 Heat of formation + Delta-G solvation = -33.655131 kcal Electronic energy + Delta-G solvation = -26008.478887 eV Core-core repulsion = 22143.211916 eV Total energy + Delta-G solvation = -3865.266971 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.82142 -40.13436 -37.16424 -36.40572 -35.71999 -34.57087 -32.75158 -31.98523 -31.55329 -29.66908 -28.59665 -27.40861 -26.60832 -23.47115 -23.09456 -21.76079 -21.08973 -20.19913 -17.70717 -17.68708 -16.97979 -16.85067 -16.34626 -15.96804 -15.75316 -15.17273 -14.57681 -14.23093 -13.91459 -13.64566 -13.34895 -13.31958 -13.08588 -12.86371 -12.60250 -12.49371 -12.44107 -12.14568 -12.04736 -11.91580 -11.74611 -11.62424 -11.53887 -11.10341 -10.92976 -10.86984 -10.62634 -10.48210 -10.46097 -10.16530 -9.98565 -9.65660 -9.15257 -8.69574 -8.60619 -7.33440 -6.14713 -4.14448 1.35792 1.43318 2.30293 2.48505 2.66063 3.25141 3.28968 3.34794 3.37085 4.15117 4.30091 4.34779 4.53037 4.81731 4.85016 4.85408 4.99023 5.17701 5.19737 5.19843 5.40826 5.45035 5.54935 5.60004 5.67463 5.68712 5.70798 5.76930 5.80682 5.85390 5.96992 6.13499 6.35379 6.57012 6.60870 6.87293 7.23278 7.34794 7.50336 7.87805 8.02161 8.39421 8.69412 8.88523 9.44483 10.98112 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.007192 B = 0.005989 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3892.159285 B = 4674.143194 C = 7863.874778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.445 3.555 5 O -0.501 6.501 6 C 0.143 3.857 7 N -0.538 5.538 8 C 0.230 3.770 9 C -0.530 4.530 10 H 0.076 0.924 11 C 0.078 3.922 12 N -0.894 5.894 13 Si 0.871 3.129 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.266 1.266 17 C 0.592 3.408 18 N -0.575 5.575 19 C 0.233 3.767 20 C -0.106 4.106 21 C -0.226 4.226 22 Cl -0.064 7.064 23 C 0.238 3.762 24 C -0.109 4.109 25 N -0.532 5.532 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.031 0.969 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.047 -8.262 -13.321 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.286 3.714 5 O -0.387 6.387 6 C 0.017 3.983 7 N -0.249 5.249 8 C 0.110 3.890 9 C -0.569 4.569 10 H 0.095 0.905 11 C -0.125 4.125 12 N -0.532 5.532 13 Si 0.698 3.302 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.191 1.191 17 C 0.238 3.762 18 N -0.301 5.301 19 C 0.083 3.917 20 C -0.163 4.163 21 C -0.261 4.261 22 Cl -0.037 7.037 23 C 0.087 3.913 24 C -0.166 4.166 25 N -0.255 5.255 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.298 -8.450 -12.153 16.504 hybrid contribution 0.885 -0.875 -0.131 1.251 sum -6.413 -9.325 -12.285 16.703 Atomic orbital electron populations 1.21787 0.92792 1.02667 1.03518 1.22945 0.95145 0.80844 1.02334 1.86508 1.24910 1.31899 1.84447 1.24863 0.80333 0.94061 0.72149 1.90651 1.60372 1.43021 1.44676 1.20839 0.80555 0.89727 1.07212 1.46081 1.03076 1.72331 1.03371 1.19841 0.92428 0.98655 0.78036 1.21266 1.37141 0.91162 1.07300 0.90549 1.24769 0.95023 0.95548 0.97150 1.69885 1.40101 1.19663 1.23521 0.86924 0.80122 0.83216 0.79928 1.19714 1.20990 1.19071 1.19170 0.85165 0.86152 0.85761 1.67784 1.40122 1.25087 0.97058 1.21140 0.89068 0.87653 0.93831 1.20785 1.00296 1.03592 0.91637 1.21863 0.93756 1.22078 0.88448 1.98286 1.76404 1.97495 1.31466 1.21353 0.97369 0.86855 0.85768 1.20823 0.87775 1.04006 1.03992 1.68017 1.06854 1.21676 1.28936 0.91504 0.90550 0.91432 0.91597 0.91493 0.85333 0.85892 0.95096 0.93525 0.92458 0.89765 0.89891 0.89876 0.89248 0.89621 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -5.34 10.22 -39.25 -0.40 -5.74 16 4 C 0.45 7.83 8.03 36.00 0.29 8.12 16 5 O -0.50 -10.37 16.18 -18.75 -0.30 -10.68 16 6 C 0.14 2.53 6.00 -5.20 -0.03 2.49 16 7 N -0.54 -11.64 2.04 -178.77 -0.37 -12.00 16 8 C 0.23 5.60 4.23 -5.20 -0.02 5.58 16 9 C -0.53 -14.60 9.94 -34.44 -0.34 -14.95 16 10 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 11 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 12 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 13 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 16 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 17 C 0.59 12.68 8.18 -322.76 -2.64 10.05 16 18 N -0.58 -10.82 9.05 -10.12 -0.09 -10.91 16 19 C 0.23 3.75 6.83 -82.22 -0.56 3.19 16 20 C -0.11 -1.22 9.85 36.01 0.35 -0.86 16 21 C -0.23 -3.60 6.35 -39.24 -0.25 -3.85 16 22 Cl -0.06 -0.81 25.95 -51.86 -1.35 -2.15 16 23 C 0.24 4.25 6.83 -82.23 -0.56 3.69 16 24 C -0.11 -1.54 9.85 36.01 0.35 -1.18 16 25 N -0.53 -11.52 9.05 -10.12 -0.09 -11.62 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.13 2.09 8.07 -51.92 -0.42 1.67 16 32 H 0.12 1.95 7.34 -51.93 -0.38 1.57 16 33 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 34 H 0.05 1.19 6.76 -51.93 -0.35 0.84 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.84 7.02 -51.93 -0.36 0.47 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 0.95 7.00 -51.93 -0.36 0.59 16 LS Contribution 365.65 15.07 5.51 5.51 Total: -1.00 -33.38 365.65 -9.52 -42.90 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.64 Total: -0.32 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: -2.89 Total: 14.45 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.22 Total: -60.43 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.70 Total: -16.42 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.35 Total: -2.15 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.38 -9.52 -42.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.241 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds