Wall clock time and date at job start Tue Mar 31 2020 15:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47324 * 2 1 4 4 C 1.34227 * 117.00485 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99589 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00557 * 180.02562 * 4 3 2 7 7 N 1.46502 * 109.47352 * 179.97438 * 6 4 3 8 8 C 1.46498 * 120.00034 * 269.99767 * 7 6 4 9 9 C 1.50697 * 109.47462 * 269.99927 * 8 7 6 10 10 H 1.07997 * 119.99669 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00177 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00003 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99877 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47557 * 89.99287 * 13 11 9 15 15 H 1.48501 * 109.46869 * 209.99792 * 13 11 9 16 16 H 1.48503 * 109.47065 * 329.99281 * 13 11 9 17 17 C 1.38461 * 119.99807 * 90.00008 * 7 6 4 18 18 N 1.32478 * 119.20412 * 359.97438 * 17 7 6 19 19 C 1.32281 * 120.75409 * 179.97438 * 18 17 7 20 20 C 1.50703 * 120.40980 * 180.02562 * 19 18 17 21 21 C 1.38705 * 119.18189 * 0.02562 * 19 18 17 22 22 Cl 1.73603 * 120.73229 * 179.72623 * 21 19 18 23 23 C 1.38691 * 118.53379 * 359.97438 * 21 19 18 24 24 C 1.50700 * 120.40928 * 180.02562 * 23 21 19 25 25 N 1.32284 * 119.18516 * 359.97438 * 23 21 19 26 26 H 1.09000 * 109.46940 * 59.99549 * 1 2 3 27 27 H 1.08991 * 109.46887 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46675 * 300.00111 * 1 2 3 29 29 H 1.09004 * 109.47012 * 240.00136 * 2 1 3 30 30 H 1.08999 * 109.47547 * 119.99999 * 2 1 3 31 31 H 1.09009 * 109.47115 * 59.99627 * 6 4 3 32 32 H 1.08994 * 109.47273 * 299.99649 * 6 4 3 33 33 H 1.09006 * 109.47035 * 30.00169 * 8 7 6 34 34 H 1.09002 * 109.47275 * 149.99887 * 8 7 6 35 35 H 0.97003 * 119.99747 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.47035 * 269.97766 * 20 19 18 37 37 H 1.08995 * 109.47029 * 29.97935 * 20 19 18 38 38 H 1.08999 * 109.47097 * 149.97420 * 20 19 18 39 39 H 1.08994 * 109.47873 * 89.99926 * 24 23 21 40 40 H 1.09005 * 109.46882 * 209.99723 * 24 23 21 41 41 H 1.09004 * 109.47205 * 329.99327 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3838 2.8607 -0.0001 8 6 6.1154 2.8219 1.2685 9 6 6.4407 4.2274 1.7041 10 1 6.1328 5.0657 1.0969 11 6 7.1304 4.4430 2.8784 12 7 7.4146 5.6696 3.2583 13 14 7.6622 2.9929 3.9290 14 1 9.0140 2.5457 3.5076 15 1 7.6986 3.4025 5.3559 16 1 6.6964 1.8777 3.7587 17 6 6.0751 2.8250 -1.1993 18 7 5.3976 2.8604 -2.3372 19 6 6.0268 2.8284 -3.5003 20 6 5.2484 2.8698 -4.7901 21 6 7.4119 2.7564 -3.5182 22 17 8.2782 2.7051 -5.0218 23 6 8.0891 2.7209 -2.3084 24 6 9.5938 2.6432 -2.2785 25 7 7.3980 2.7572 -1.1810 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.5852 3.4691 0.8905 32 1 3.5845 3.4700 -0.8895 33 1 5.5003 2.3392 2.0281 34 1 7.0396 2.2589 1.1379 35 1 7.9002 5.8212 4.0842 36 1 5.0077 1.8535 -5.1019 37 1 4.3266 3.4318 -4.6403 38 1 5.8479 3.3540 -5.5610 39 1 10.0097 3.6506 -2.2709 40 1 9.9124 2.1119 -1.3817 41 1 9.9477 2.1106 -3.1613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:57 Heat of formation + Delta-G solvation = -51.366651 kcal Electronic energy + Delta-G solvation = -26009.246916 eV Core-core repulsion = 22143.211916 eV Total energy + Delta-G solvation = -3866.035000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.21539 -41.46284 -38.55253 -37.62516 -37.14057 -35.88981 -34.79729 -33.20320 -32.66807 -31.17921 -30.06155 -28.69628 -28.06011 -24.97523 -24.42159 -23.03133 -22.46646 -21.65973 -19.29551 -19.09141 -18.72553 -18.39563 -17.60325 -17.29773 -17.10626 -16.52344 -16.33772 -15.69957 -15.30664 -14.92965 -14.61665 -14.51845 -14.38192 -14.23407 -13.83771 -13.75154 -13.59438 -13.42803 -13.33849 -13.15557 -13.00041 -12.94360 -12.77201 -12.52026 -12.51161 -12.29575 -12.17689 -11.97937 -11.79331 -11.67323 -11.55185 -11.35633 -10.82084 -10.63447 -10.07061 -8.85249 -8.32697 -6.37086 -0.02472 0.10189 1.04850 1.11098 1.31501 1.35451 1.38574 1.44955 1.93023 2.30463 2.74245 2.99022 3.04583 3.32603 3.43104 3.72732 3.94396 3.97052 4.06643 4.08537 4.31947 4.32379 4.33538 4.55181 4.64206 4.65406 4.69093 4.74199 4.80170 4.82866 4.91305 4.92700 5.12188 5.12921 5.28217 5.40084 5.41963 5.66007 5.84063 6.22211 6.40048 6.63063 6.68997 7.20564 7.29638 8.83584 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.007192 B = 0.005989 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3892.159285 B = 4674.143194 C = 7863.874778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.355 6.355 4 C 0.455 3.545 5 O -0.536 6.536 6 C 0.142 3.858 7 N -0.555 5.555 8 C 0.249 3.751 9 C -0.525 4.525 10 H 0.035 0.965 11 C 0.026 3.974 12 N -0.938 5.938 13 Si 0.936 3.064 14 H -0.269 1.269 15 H -0.275 1.275 16 H -0.253 1.253 17 C 0.570 3.430 18 N -0.579 5.579 19 C 0.222 3.778 20 C -0.101 4.101 21 C -0.222 4.222 22 Cl -0.028 7.028 23 C 0.217 3.783 24 C -0.105 4.105 25 N -0.577 5.577 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.035 0.965 34 H 0.033 0.967 35 H 0.269 0.731 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 -9.747 -14.962 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.271 6.271 4 C 0.297 3.703 5 O -0.425 6.425 6 C 0.016 3.984 7 N -0.267 5.267 8 C 0.127 3.873 9 C -0.564 4.564 10 H 0.054 0.946 11 C -0.173 4.173 12 N -0.578 5.578 13 Si 0.759 3.241 14 H -0.194 1.194 15 H -0.200 1.200 16 H -0.177 1.177 17 C 0.216 3.784 18 N -0.305 5.305 19 C 0.074 3.926 20 C -0.158 4.158 21 C -0.257 4.257 22 Cl 0.000 7.000 23 C 0.069 3.931 24 C -0.162 4.162 25 N -0.301 5.301 26 H 0.091 0.909 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.020 -9.937 -13.860 18.846 hybrid contribution 1.093 -0.381 0.146 1.167 sum -6.927 -10.318 -13.715 18.508 Atomic orbital electron populations 1.21811 0.89716 1.04442 1.03950 1.23303 0.97478 0.79251 1.02116 1.86504 1.23136 1.33803 1.83694 1.24701 0.80986 0.93418 0.71218 1.90631 1.61370 1.43958 1.46549 1.20984 0.78828 0.90282 1.08298 1.45928 1.04307 1.73711 1.02737 1.19368 0.92302 0.96011 0.79630 1.21355 1.36626 0.91745 1.06679 0.94630 1.25582 0.95038 0.98199 0.98520 1.70017 1.41423 1.21945 1.24411 0.85895 0.79867 0.80001 0.78290 1.19399 1.20001 1.17730 1.19383 0.85507 0.87163 0.86394 1.67839 1.40129 1.25363 0.97144 1.21974 0.89869 0.86269 0.94537 1.20928 1.00351 1.05060 0.89415 1.21961 0.94105 1.20143 0.89485 1.98297 1.75620 1.97243 1.28793 1.21943 0.98823 0.86578 0.85798 1.20917 0.85648 1.04729 1.04908 1.67971 1.07467 1.23434 1.31198 0.90904 0.88066 0.91141 0.91751 0.91913 0.84547 0.84413 0.94723 0.94934 0.92189 0.87916 0.88985 0.88116 0.88459 0.90254 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 10.29 71.98 0.74 -1.35 16 2 C 0.05 1.19 6.19 71.98 0.45 1.64 16 3 O -0.36 -10.22 10.22 -51.39 -0.53 -10.74 16 4 C 0.45 15.97 8.03 71.23 0.57 16.54 16 5 O -0.54 -22.38 16.18 21.95 0.36 -22.03 16 6 C 0.14 5.06 6.00 85.63 0.51 5.57 16 7 N -0.55 -24.64 2.04 -719.52 -1.47 -26.11 16 8 C 0.25 12.38 4.23 85.63 0.36 12.75 16 9 C -0.53 -30.01 9.94 25.60 0.25 -29.75 16 10 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 11 C 0.03 1.47 5.47 84.66 0.46 1.94 16 12 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 13 Si 0.94 44.09 27.47 68.60 1.88 45.98 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 16 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 17 C 0.57 24.97 8.18 261.47 2.14 27.11 16 18 N -0.58 -21.71 9.05 -185.93 -1.68 -23.39 16 19 C 0.22 6.88 6.83 42.60 0.29 7.17 16 20 C -0.10 -2.04 9.85 71.24 0.70 -1.34 16 21 C -0.22 -6.77 6.35 22.49 0.14 -6.63 16 22 Cl -0.03 -0.62 25.95 -2.72 -0.07 -0.69 16 23 C 0.22 7.75 6.83 42.60 0.29 8.04 16 24 C -0.11 -2.89 9.85 71.24 0.70 -2.19 16 25 N -0.58 -25.60 9.05 -185.94 -1.68 -27.28 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 30 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 31 H 0.14 4.53 8.07 -2.38 -0.02 4.51 16 32 H 0.14 4.41 7.34 -2.39 -0.02 4.39 16 33 H 0.03 1.69 7.13 -2.38 -0.02 1.67 16 34 H 0.03 1.71 6.76 -2.39 -0.02 1.69 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 1.69 7.02 -2.39 -0.02 1.67 16 39 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.11 2.30 7.00 -2.38 -0.02 2.29 16 Total: -1.00 -74.71 365.65 5.71 -68.99 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.99 Total: 13.04 kcal Atomic # 6 Polarization: 31.87 SS G_CDS: 7.62 Total: 39.49 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -4.54 Total: -134.03 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.17 Total: -32.77 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.07 Total: -0.69 kcal Total: -74.71 5.71 -68.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.625 kcal (2) G-P(sol) polarization free energy of solvation -74.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds