Wall clock time and date at job start Tue Mar 31 2020 15:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47108 * 2 1 4 4 C 1.34234 * 116.99930 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99904 * 179.97438 * 4 3 2 7 7 C 1.50699 * 109.46831 * 180.02562 * 6 4 3 8 8 C 1.38323 * 120.84092 * 269.97931 * 7 6 4 9 9 Cl 1.73599 * 120.41606 * 0.02562 * 8 7 6 10 10 N 1.32658 * 119.16451 * 180.02562 * 8 7 6 11 11 C 1.31780 * 120.98802 * 0.02562 * 10 8 7 12 12 N 1.31736 * 121.84987 * 359.71360 * 11 10 8 13 13 C 1.33040 * 120.72115 * 0.58103 * 12 11 10 14 14 N 1.38558 * 120.52346 * 179.71647 * 13 12 11 15 15 C 1.46496 * 119.99920 * 359.71452 * 14 13 12 16 16 C 1.53006 * 109.46995 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47055 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.37887 * 120.00079 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99685 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00129 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46879 * 60.00177 * 22 20 18 24 24 H 1.48494 * 109.47196 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47151 * 300.00589 * 22 20 18 26 26 H 1.08995 * 109.47039 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47031 * 300.00478 * 1 2 3 28 28 H 1.09000 * 109.46887 * 60.00117 * 1 2 3 29 29 H 1.08999 * 109.47463 * 239.99296 * 2 1 3 30 30 H 1.09009 * 109.47086 * 119.99681 * 2 1 3 31 31 H 1.09007 * 109.46599 * 60.00559 * 6 4 3 32 32 H 1.08999 * 109.47701 * 300.00573 * 6 4 3 33 33 H 1.08000 * 119.07329 * 180.02562 * 11 10 8 34 34 H 0.96998 * 119.99889 * 179.72115 * 14 13 12 35 35 H 1.09001 * 109.47464 * 60.00829 * 15 14 13 36 36 H 1.09001 * 109.47459 * 300.00544 * 15 14 13 37 37 H 1.09001 * 109.47002 * 299.99701 * 16 15 14 38 38 H 1.08993 * 109.46955 * 60.00138 * 16 15 14 39 39 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 40 40 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 41 41 H 0.96999 * 119.99910 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4257 2.8584 0.0001 8 6 6.1338 2.8222 1.1878 9 17 5.3000 2.8665 2.7098 10 7 7.4580 2.7533 1.1491 11 6 8.1024 2.7196 0.0001 12 7 7.4676 2.7469 -1.1539 13 6 6.1400 2.8218 -1.1978 14 7 5.4769 2.8562 -2.4139 15 6 6.2384 2.8164 -3.6648 16 6 5.2735 2.8671 -4.8511 17 6 6.0687 2.8249 -6.1575 18 6 5.1183 2.8743 -7.3259 19 1 4.0536 2.9306 -7.1540 20 6 5.6081 2.8487 -8.6146 21 7 6.9047 2.7806 -8.8240 22 14 4.4300 2.9106 -10.0630 23 1 3.6394 4.1663 -10.0046 24 1 5.2018 2.8695 -11.3309 25 1 3.5121 1.7446 -10.0047 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.5844 3.4700 0.8896 32 1 3.5852 3.4691 -0.8904 33 1 9.1809 2.6630 0.0047 34 1 4.5086 2.9067 -2.4370 35 1 6.8191 1.8949 -3.7076 36 1 6.9118 3.6724 -3.7077 37 1 4.5999 2.0112 -4.8085 38 1 4.6932 3.7887 -4.8082 39 1 6.7426 3.6806 -6.2005 40 1 6.6489 1.9031 -6.2002 41 1 7.2492 2.7622 -9.7306 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157640873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:56 Heat of formation + Delta-G solvation = -60.128733 kcal Electronic energy + Delta-G solvation = -24949.109053 eV Core-core repulsion = 21082.694101 eV Total energy + Delta-G solvation = -3866.414953 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41746 -40.43713 -37.30186 -37.06338 -36.68008 -34.30145 -33.70196 -32.57926 -32.01600 -30.81822 -28.65460 -26.76026 -24.50314 -23.89795 -23.02331 -22.41945 -21.16883 -20.58697 -18.49119 -18.04394 -17.92964 -16.83852 -16.65217 -16.37330 -15.64456 -15.42299 -14.82841 -14.65650 -14.56204 -14.54077 -14.35938 -14.03917 -13.53159 -13.08419 -12.95029 -12.81435 -12.35445 -12.14322 -12.07404 -11.89373 -11.87366 -11.67671 -11.09223 -10.93469 -10.81719 -10.80023 -10.77361 -10.70070 -10.65158 -9.91998 -9.77616 -9.60745 -9.36538 -9.19733 -8.41721 -8.21462 -6.06483 -4.09888 0.62858 1.14509 1.40924 1.96807 2.41084 2.99380 3.28803 3.33903 3.35659 3.66425 3.98212 4.25388 4.28332 4.40386 4.49206 4.55278 4.63998 4.68791 4.78765 4.97647 5.19454 5.23700 5.29387 5.39767 5.46836 5.55354 5.66130 5.66946 5.92185 6.05215 6.18957 6.48949 6.50081 6.56012 6.88115 7.01344 7.37297 7.51375 7.56862 7.68871 7.91438 8.07722 8.32282 8.96220 9.54531 11.04710 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.002982 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.685863 B = 9388.069965 C =11481.307671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.460 3.540 5 O -0.492 6.492 6 C -0.060 4.060 7 C -0.246 4.246 8 C 0.269 3.731 9 Cl -0.023 7.023 10 N -0.565 5.565 11 C 0.365 3.635 12 N -0.565 5.565 13 C 0.471 3.529 14 N -0.694 5.694 15 C 0.123 3.877 16 C -0.123 4.123 17 C 0.027 3.973 18 C -0.525 4.525 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.206 0.794 34 H 0.407 0.593 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.020 0.980 40 H 0.019 0.981 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 -0.533 22.781 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.275 6.275 4 C 0.302 3.698 5 O -0.378 6.378 6 C -0.099 4.099 7 C -0.258 4.258 8 C 0.099 3.901 9 Cl 0.005 6.995 10 N -0.287 5.287 11 C 0.076 3.924 12 N -0.290 5.290 13 C 0.224 3.776 14 N -0.323 5.323 15 C 0.001 3.999 16 C -0.162 4.162 17 C -0.011 4.011 18 C -0.563 4.563 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.222 0.778 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.833 -0.930 22.532 23.564 hybrid contribution -1.808 -0.128 -0.707 1.945 sum -8.641 -1.058 21.825 23.497 Atomic orbital electron populations 1.21812 0.92452 1.03079 1.03614 1.23066 0.95443 0.79939 1.02807 1.86484 1.24149 1.32710 1.84134 1.23528 0.80766 0.92460 0.73060 1.90714 1.60371 1.42758 1.43988 1.19965 0.90428 0.92201 1.07260 1.19781 0.95444 1.18285 0.92299 1.21369 0.90036 0.92177 0.86535 1.98405 1.75334 1.95862 1.29864 1.67820 1.07337 1.21884 1.31625 1.24724 1.00615 0.86595 0.80482 1.68116 1.07209 1.22744 1.30911 1.18248 0.88336 0.85306 0.85706 1.45083 1.09111 1.75144 1.03008 1.21787 0.94978 1.02495 0.80689 1.21932 0.98205 1.00908 0.95110 1.18998 0.95238 0.97710 0.89135 1.21152 0.93106 1.51139 0.90935 0.92719 1.25021 0.95093 0.95178 0.99064 1.69948 1.11751 1.50202 1.21290 0.86640 0.80908 0.78620 0.81728 1.20210 1.21224 1.20238 0.90175 0.91493 0.91245 0.90972 0.91217 0.85937 0.86649 0.77771 0.75534 0.91275 0.91173 0.92767 0.92642 0.96182 0.96219 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.57 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -3.73 10.22 -39.27 -0.40 -4.14 16 4 C 0.46 5.43 7.95 36.00 0.29 5.72 16 5 O -0.49 -7.45 15.78 -18.75 -0.30 -7.74 16 6 C -0.06 -0.58 5.20 -29.04 -0.15 -0.73 16 7 C -0.25 -3.07 4.43 -104.11 -0.46 -3.54 16 8 C 0.27 3.47 7.32 -17.16 -0.13 3.34 16 9 Cl -0.02 -0.25 27.63 -51.86 -1.43 -1.68 16 10 N -0.56 -7.55 10.43 -11.76 -0.12 -7.67 16 11 C 0.36 4.57 12.28 -92.22 -1.13 3.44 16 12 N -0.57 -8.26 9.70 -13.83 -0.13 -8.39 16 13 C 0.47 6.66 7.49 -154.76 -1.16 5.50 16 14 N -0.69 -9.60 5.62 -60.28 -0.34 -9.94 16 15 C 0.12 2.01 5.73 -4.04 -0.02 1.98 16 16 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 17 C 0.03 0.66 4.97 -27.89 -0.14 0.52 16 18 C -0.53 -14.38 9.11 -34.44 -0.31 -14.69 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 22 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.07 0.61 8.13 -51.92 -0.42 0.19 16 31 H 0.12 0.94 7.02 -51.93 -0.36 0.58 16 32 H 0.12 0.88 6.67 -51.93 -0.35 0.54 16 33 H 0.21 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.41 4.82 6.60 -40.82 -0.27 4.55 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -32.86 369.17 -9.89 -42.74 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.59 Total: -0.10 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.85 Total: 0.82 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.14 Total: -51.62 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.70 Total: -11.88 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.43 Total: -1.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.86 -9.89 -42.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157640873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.388 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds