Wall clock time and date at job start Tue Mar 31 2020 15:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47108 * 2 1 4 4 C 1.34234 * 116.99930 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99904 * 179.97438 * 4 3 2 7 7 C 1.50699 * 109.46831 * 180.02562 * 6 4 3 8 8 C 1.38323 * 120.84092 * 269.97931 * 7 6 4 9 9 Cl 1.73599 * 120.41606 * 0.02562 * 8 7 6 10 10 N 1.32658 * 119.16451 * 180.02562 * 8 7 6 11 11 C 1.31780 * 120.98802 * 0.02562 * 10 8 7 12 12 N 1.31736 * 121.84987 * 359.71360 * 11 10 8 13 13 C 1.33040 * 120.72115 * 0.58103 * 12 11 10 14 14 N 1.38558 * 120.52346 * 179.71647 * 13 12 11 15 15 C 1.46496 * 119.99920 * 359.71452 * 14 13 12 16 16 C 1.53006 * 109.46995 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47055 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.37887 * 120.00079 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99685 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00129 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46879 * 60.00177 * 22 20 18 24 24 H 1.48494 * 109.47196 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47151 * 300.00589 * 22 20 18 26 26 H 1.08995 * 109.47039 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47031 * 300.00478 * 1 2 3 28 28 H 1.09000 * 109.46887 * 60.00117 * 1 2 3 29 29 H 1.08999 * 109.47463 * 239.99296 * 2 1 3 30 30 H 1.09009 * 109.47086 * 119.99681 * 2 1 3 31 31 H 1.09007 * 109.46599 * 60.00559 * 6 4 3 32 32 H 1.08999 * 109.47701 * 300.00573 * 6 4 3 33 33 H 1.08000 * 119.07329 * 180.02562 * 11 10 8 34 34 H 0.96998 * 119.99889 * 179.72115 * 14 13 12 35 35 H 1.09001 * 109.47464 * 60.00829 * 15 14 13 36 36 H 1.09001 * 109.47459 * 300.00544 * 15 14 13 37 37 H 1.09001 * 109.47002 * 299.99701 * 16 15 14 38 38 H 1.08993 * 109.46955 * 60.00138 * 16 15 14 39 39 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 40 40 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 41 41 H 0.96999 * 119.99910 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4257 2.8584 0.0001 8 6 6.1338 2.8222 1.1878 9 17 5.3000 2.8665 2.7098 10 7 7.4580 2.7533 1.1491 11 6 8.1024 2.7196 0.0001 12 7 7.4676 2.7469 -1.1539 13 6 6.1400 2.8218 -1.1978 14 7 5.4769 2.8562 -2.4139 15 6 6.2384 2.8164 -3.6648 16 6 5.2735 2.8671 -4.8511 17 6 6.0687 2.8249 -6.1575 18 6 5.1183 2.8743 -7.3259 19 1 4.0536 2.9306 -7.1540 20 6 5.6081 2.8487 -8.6146 21 7 6.9047 2.7806 -8.8240 22 14 4.4300 2.9106 -10.0630 23 1 3.6394 4.1663 -10.0046 24 1 5.2018 2.8695 -11.3309 25 1 3.5121 1.7446 -10.0047 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.5844 3.4700 0.8896 32 1 3.5852 3.4691 -0.8904 33 1 9.1809 2.6630 0.0047 34 1 4.5086 2.9067 -2.4370 35 1 6.8191 1.8949 -3.7076 36 1 6.9118 3.6724 -3.7077 37 1 4.5999 2.0112 -4.8085 38 1 4.6932 3.7887 -4.8082 39 1 6.7426 3.6806 -6.2005 40 1 6.6489 1.9031 -6.2002 41 1 7.2492 2.7622 -9.7306 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157640873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:55 Heat of formation + Delta-G solvation = -78.377585 kcal Electronic energy + Delta-G solvation = -24949.900383 eV Core-core repulsion = 21082.694101 eV Total energy + Delta-G solvation = -3867.206282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.39915 -41.35598 -38.37647 -37.99512 -37.69921 -35.88081 -34.80361 -34.11812 -32.74662 -32.24295 -29.63093 -28.41986 -25.65346 -25.15491 -23.80333 -23.75345 -22.28455 -21.97337 -19.57229 -19.03541 -18.91828 -18.39214 -17.68218 -17.53183 -16.70468 -16.59868 -16.52594 -15.91047 -15.70069 -15.57221 -15.29053 -15.06643 -14.34816 -14.29261 -14.16393 -13.79228 -13.62558 -13.56457 -13.33147 -12.89139 -12.78272 -12.64447 -12.52594 -12.50011 -12.41020 -12.18209 -11.84487 -11.70337 -11.55566 -11.53093 -11.50695 -11.22289 -10.79054 -10.54636 -10.42876 -9.30705 -8.19679 -6.30875 -0.33694 0.10247 0.46157 1.07121 1.41648 1.44090 1.51966 1.61653 1.90344 2.41890 2.67070 3.08652 3.14237 3.30641 3.33725 3.63782 3.70321 3.94568 3.99167 4.06993 4.15521 4.21062 4.33541 4.38204 4.44991 4.54721 4.83752 4.86942 4.92706 4.94005 5.12735 5.13897 5.15518 5.41738 5.49436 5.51613 5.70392 5.82592 5.83915 6.22812 6.35067 6.63427 6.86078 7.07229 7.38605 8.92011 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.002982 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.685863 B = 9388.069965 C =11481.307671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.464 3.536 5 O -0.531 6.531 6 C -0.060 4.060 7 C -0.241 4.241 8 C 0.255 3.745 9 Cl -0.006 7.006 10 N -0.574 5.574 11 C 0.361 3.639 12 N -0.591 5.591 13 C 0.457 3.543 14 N -0.691 5.691 15 C 0.142 3.858 16 C -0.106 4.106 17 C 0.028 3.972 18 C -0.544 4.544 19 H 0.064 0.936 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.267 1.267 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.237 0.763 34 H 0.417 0.583 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.069 0.931 39 H -0.003 1.003 40 H -0.008 1.008 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.263 -0.030 23.573 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.307 3.693 5 O -0.420 6.420 6 C -0.098 4.098 7 C -0.253 4.253 8 C 0.086 3.914 9 Cl 0.023 6.977 10 N -0.296 5.296 11 C 0.073 3.927 12 N -0.315 5.315 13 C 0.211 3.789 14 N -0.322 5.322 15 C 0.019 3.981 16 C -0.144 4.144 17 C -0.010 4.010 18 C -0.582 4.582 19 H 0.082 0.918 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.788 3.212 23 H -0.190 1.190 24 H -0.211 1.211 25 H -0.192 1.192 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.252 0.748 34 H 0.257 0.743 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.015 0.985 40 H 0.010 0.990 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.974 -0.415 23.367 25.035 hybrid contribution -1.139 -0.311 -0.847 1.453 sum -10.113 -0.726 22.521 24.698 Atomic orbital electron populations 1.21824 0.90215 1.04325 1.03945 1.23287 0.97193 0.79202 1.02367 1.86494 1.23377 1.33609 1.83623 1.23857 0.80908 0.92679 0.71843 1.90705 1.61217 1.44100 1.46007 1.20124 0.88594 0.91502 1.09565 1.19922 0.96817 1.17121 0.91461 1.21657 0.90199 0.92074 0.87490 1.98406 1.74916 1.95732 1.28647 1.67899 1.07773 1.21977 1.31941 1.25358 1.01884 0.85684 0.79794 1.68132 1.07809 1.23527 1.32079 1.18429 0.88600 0.85804 0.86086 1.44757 1.09379 1.75972 1.02110 1.21307 0.94219 1.01439 0.81140 1.21631 0.97844 1.01839 0.93073 1.18886 0.94968 0.95240 0.91874 1.21654 0.93992 1.50533 0.91997 0.91756 1.25979 0.96774 0.94772 1.02332 1.70091 1.13834 1.51417 1.21963 0.85517 0.78657 0.79234 0.77748 1.18960 1.21138 1.19232 0.88498 0.90761 0.91245 0.91918 0.91282 0.83621 0.84226 0.74754 0.74337 0.92911 0.91777 0.92216 0.91198 0.98460 0.98971 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 71.98 0.74 -0.81 16 2 C 0.05 0.89 6.19 71.98 0.45 1.33 16 3 O -0.35 -6.84 10.22 -51.46 -0.53 -7.37 16 4 C 0.46 10.31 7.95 71.24 0.57 10.88 16 5 O -0.53 -15.82 15.78 21.96 0.35 -15.47 16 6 C -0.06 -1.04 5.20 29.10 0.15 -0.89 16 7 C -0.24 -5.72 4.43 -19.53 -0.09 -5.81 16 8 C 0.26 6.28 7.32 84.59 0.62 6.90 16 9 Cl -0.01 -0.11 27.63 -2.72 -0.08 -0.19 16 10 N -0.57 -14.77 10.43 -191.11 -1.99 -16.77 16 11 C 0.36 8.76 12.28 180.91 2.22 10.98 16 12 N -0.59 -17.04 9.70 -197.66 -1.92 -18.96 16 13 C 0.46 12.58 7.49 133.12 1.00 13.58 16 14 N -0.69 -18.49 5.62 -344.63 -1.94 -20.42 16 15 C 0.14 4.66 5.73 86.38 0.49 5.16 16 16 C -0.11 -3.93 5.27 30.60 0.16 -3.77 16 17 C 0.03 1.41 4.97 29.85 0.15 1.56 16 18 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 19 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 20 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 21 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 22 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 30 H 0.07 1.16 8.13 -2.38 -0.02 1.14 16 31 H 0.15 1.85 7.02 -2.38 -0.02 1.84 16 32 H 0.14 1.75 6.67 -2.39 -0.02 1.74 16 33 H 0.24 3.80 8.06 -2.91 -0.02 3.78 16 34 H 0.42 9.18 6.60 -92.71 -0.61 8.57 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 41 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -71.27 369.17 3.81 -67.46 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.45 Total: 12.35 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 7.16 Total: 9.95 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -5.56 Total: -111.93 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.18 Total: -22.84 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal Total: -71.27 3.81 -67.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157640873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.922 kcal (2) G-P(sol) polarization free energy of solvation -71.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds