Wall clock time and date at job start Tue Mar 31 2020 15:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 7 7 C 1.53002 * 109.46941 * 299.99657 * 5 3 2 8 8 C 1.50703 * 109.47225 * 180.02562 * 5 3 2 9 9 C 1.38311 * 120.84069 * 60.00049 * 8 5 3 10 10 Cl 1.73602 * 120.41926 * 359.97303 * 9 8 5 11 11 N 1.32666 * 119.16762 * 180.02562 * 9 8 5 12 12 C 1.31786 * 120.98218 * 359.97438 * 11 9 8 13 13 N 1.31741 * 121.85015 * 359.97438 * 12 11 9 14 14 C 1.33034 * 120.71880 * 359.71654 * 13 12 11 15 15 N 1.38564 * 120.51882 * 180.28644 * 14 13 12 16 16 C 1.46493 * 120.00140 * 0.27554 * 15 14 13 17 17 C 1.53005 * 109.47330 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47218 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46536 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00560 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99367 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00056 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99794 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.47043 * 59.99885 * 23 21 19 25 25 H 1.48495 * 109.47281 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47454 * 300.00137 * 23 21 19 27 27 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 29 29 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 30 30 H 1.09003 * 109.47422 * 180.02562 * 7 5 3 31 31 H 1.09003 * 109.47318 * 300.00255 * 7 5 3 32 32 H 1.09008 * 109.46908 * 59.99812 * 7 5 3 33 33 H 1.08000 * 119.07498 * 180.02562 * 12 11 9 34 34 H 0.97007 * 119.99921 * 180.28184 * 15 14 13 35 35 H 1.08997 * 109.47314 * 299.99912 * 16 15 14 36 36 H 1.08997 * 109.47269 * 60.00479 * 16 15 14 37 37 H 1.09004 * 109.46872 * 300.00294 * 17 16 15 38 38 H 1.09001 * 109.47125 * 59.99510 * 17 16 15 39 39 H 1.09001 * 109.46728 * 299.99211 * 18 17 16 40 40 H 1.08989 * 109.47411 * 59.99851 * 18 17 16 41 41 H 0.97006 * 119.99783 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7809 -0.8907 7 6 4.1139 0.5811 1.2484 8 6 3.9936 2.7201 0.0002 9 6 3.6257 3.5677 1.0293 10 17 2.6591 2.9823 2.3472 11 7 4.0197 4.8340 0.9962 12 6 4.7532 5.2904 0.0009 13 7 5.1268 4.5178 -0.9986 14 6 4.7763 3.2350 -1.0337 15 7 5.1765 2.4247 -2.0841 16 6 5.9970 2.9776 -3.1643 17 6 6.2967 1.8818 -4.1893 18 6 7.1543 2.4592 -5.3172 19 6 7.4488 1.3800 -6.3269 20 1 7.0634 0.3821 -6.1788 21 6 8.2105 1.6667 -7.4399 22 7 8.6795 2.8820 -7.6206 23 14 8.5763 0.3289 -8.6912 24 1 7.3013 -0.1864 -9.2520 25 1 9.4075 0.8895 -9.7867 26 1 9.3102 -0.7800 -8.0302 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 5.2024 0.6386 1.2483 31 1 3.7244 1.0750 2.1386 32 1 3.8048 -0.4642 1.2483 33 1 5.0573 6.3267 0.0053 34 1 4.9132 1.4912 -2.1041 35 1 5.4582 3.7912 -3.6499 36 1 6.9326 3.3561 -2.7527 37 1 6.8354 1.0679 -3.7039 38 1 5.3610 1.5036 -4.6009 39 1 6.6159 3.2732 -5.8026 40 1 8.0899 2.8371 -4.9053 41 1 9.2150 3.0838 -8.4038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157643177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:17 Heat of formation + Delta-G solvation = -47.231185 kcal Electronic energy + Delta-G solvation = -25350.332420 eV Core-core repulsion = 21484.476747 eV Total energy + Delta-G solvation = -3865.855673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54019 -40.45187 -37.29729 -37.06909 -36.60007 -35.05074 -33.95977 -32.62458 -31.33881 -29.85478 -28.01125 -26.76283 -25.61399 -24.00675 -23.54109 -22.42362 -20.81873 -20.62512 -18.70504 -18.03300 -17.44689 -16.96106 -16.60391 -16.37281 -15.64547 -15.44516 -15.05405 -14.66743 -14.58919 -14.38327 -14.13563 -14.02369 -13.74626 -13.20615 -12.67842 -12.60361 -12.44152 -12.30609 -12.23695 -11.90546 -11.87199 -11.39292 -11.09741 -10.99006 -10.84057 -10.76732 -10.65434 -10.61989 -10.48068 -9.90850 -9.73012 -9.60591 -9.35321 -9.19984 -8.42071 -8.20725 -6.06831 -4.10262 0.66770 1.15075 1.49109 1.96290 2.43160 2.97587 3.28700 3.33874 3.35579 3.66580 3.94415 4.20346 4.28416 4.39921 4.48306 4.54732 4.65735 4.83507 4.91373 5.04738 5.11281 5.25256 5.29109 5.39437 5.45825 5.56838 5.66302 5.79969 5.92573 6.04718 6.11156 6.48545 6.50255 6.56570 6.87883 7.00767 7.38434 7.49560 7.56525 7.68412 7.91092 8.08403 8.31860 8.95934 9.54254 11.04335 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002757 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.563612 B =10153.672061 C =11389.672975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.464 3.536 4 O -0.490 6.490 5 C -0.021 4.021 6 H 0.114 0.886 7 C -0.156 4.156 8 C -0.248 4.248 9 C 0.282 3.718 10 Cl -0.017 7.017 11 N -0.566 5.566 12 C 0.364 3.636 13 N -0.566 5.566 14 C 0.467 3.533 15 N -0.697 5.697 16 C 0.123 3.877 17 C -0.124 4.124 18 C 0.027 3.973 19 C -0.525 4.525 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.206 0.794 34 H 0.408 0.592 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.148 -3.693 20.396 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.305 3.695 4 O -0.375 6.375 5 C -0.042 4.042 6 H 0.132 0.868 7 C -0.213 4.213 8 C -0.260 4.260 9 C 0.113 3.887 10 Cl 0.012 6.988 11 N -0.288 5.288 12 C 0.075 3.925 13 N -0.291 5.291 14 C 0.220 3.780 15 N -0.328 5.328 16 C 0.001 3.999 17 C -0.162 4.162 18 C -0.011 4.011 19 C -0.563 4.563 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.222 0.778 34 H 0.247 0.753 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.956 -2.341 20.186 24.100 hybrid contribution -0.445 -1.764 -0.735 1.963 sum -13.401 -4.105 19.451 23.975 Atomic orbital electron populations 1.23282 0.76173 1.03705 1.02653 1.86481 1.23466 1.33022 1.84217 1.23468 0.91551 0.81665 0.72784 1.90711 1.66760 1.36158 1.43890 1.19511 0.88278 0.93115 1.03275 0.86845 1.22081 1.02374 1.01122 0.95726 1.19857 1.10586 0.96815 0.98774 1.21251 0.89586 0.89809 0.88090 1.98379 1.68452 1.85791 1.46193 1.67837 1.17929 1.13606 1.29394 1.24728 0.86283 0.99505 0.82026 1.68130 1.28616 1.03516 1.28802 1.18236 0.86140 0.88087 0.85528 1.45143 1.54491 1.11707 1.21410 1.21781 0.94056 0.97846 0.86255 1.21936 1.00953 0.96704 0.96584 1.18999 0.94328 0.96438 0.91337 1.21154 1.32556 0.96376 1.06259 0.92698 1.25020 0.95792 0.95467 0.98081 1.69948 1.35366 1.19232 1.28653 0.86642 0.78350 0.81968 0.80941 1.20233 1.21235 1.20209 0.88008 0.91890 0.91806 0.90563 0.90775 0.90329 0.77796 0.75342 0.91316 0.91212 0.92620 0.92708 0.96228 0.96191 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.52 10.47 -39.24 -0.41 -3.93 16 3 C 0.46 5.38 6.23 36.00 0.22 5.60 16 4 O -0.49 -6.98 13.68 -18.76 -0.26 -7.24 16 5 C -0.02 -0.22 2.88 -92.92 -0.27 -0.48 16 6 H 0.11 0.98 5.81 -51.93 -0.30 0.68 16 7 C -0.16 -1.28 8.89 37.16 0.33 -0.95 16 8 C -0.25 -3.16 4.42 -104.11 -0.46 -3.62 16 9 C 0.28 3.80 6.50 -17.16 -0.11 3.69 16 10 Cl -0.02 -0.20 23.26 -51.86 -1.21 -1.41 16 11 N -0.57 -7.76 10.43 -11.76 -0.12 -7.88 16 12 C 0.36 4.58 12.28 -92.21 -1.13 3.45 16 13 N -0.57 -8.18 9.70 -13.83 -0.13 -8.31 16 14 C 0.47 6.49 7.49 -154.76 -1.16 5.33 16 15 N -0.70 -9.29 5.64 -60.29 -0.34 -9.63 16 16 C 0.12 1.96 5.73 -4.04 -0.02 1.93 16 17 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 18 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 19 C -0.53 -14.27 9.11 -34.44 -0.31 -14.59 16 20 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 23 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.65 5.06 -51.93 -0.26 0.39 16 32 H 0.08 0.53 8.11 -51.92 -0.42 0.11 16 33 H 0.21 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.41 4.54 6.22 -40.82 -0.25 4.29 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.02 0.51 8.14 -51.94 -0.42 0.09 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -32.55 357.84 -9.02 -41.57 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.43 Total: -0.45 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.22 Total: 1.31 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.14 Total: -51.32 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.67 Total: -11.16 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.21 Total: -1.41 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.55 -9.02 -41.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157643177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.662 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds