Wall clock time and date at job start Tue Mar 31 2020 15:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 7 7 C 1.53002 * 109.46941 * 299.99657 * 5 3 2 8 8 C 1.50703 * 109.47225 * 180.02562 * 5 3 2 9 9 C 1.38311 * 120.84069 * 60.00049 * 8 5 3 10 10 Cl 1.73602 * 120.41926 * 359.97303 * 9 8 5 11 11 N 1.32666 * 119.16762 * 180.02562 * 9 8 5 12 12 C 1.31786 * 120.98218 * 359.97438 * 11 9 8 13 13 N 1.31741 * 121.85015 * 359.97438 * 12 11 9 14 14 C 1.33034 * 120.71880 * 359.71654 * 13 12 11 15 15 N 1.38564 * 120.51882 * 180.28644 * 14 13 12 16 16 C 1.46493 * 120.00140 * 0.27554 * 15 14 13 17 17 C 1.53005 * 109.47330 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47218 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46536 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00560 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99367 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00056 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99794 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.47043 * 59.99885 * 23 21 19 25 25 H 1.48495 * 109.47281 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47454 * 300.00137 * 23 21 19 27 27 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 29 29 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 30 30 H 1.09003 * 109.47422 * 180.02562 * 7 5 3 31 31 H 1.09003 * 109.47318 * 300.00255 * 7 5 3 32 32 H 1.09008 * 109.46908 * 59.99812 * 7 5 3 33 33 H 1.08000 * 119.07498 * 180.02562 * 12 11 9 34 34 H 0.97007 * 119.99921 * 180.28184 * 15 14 13 35 35 H 1.08997 * 109.47314 * 299.99912 * 16 15 14 36 36 H 1.08997 * 109.47269 * 60.00479 * 16 15 14 37 37 H 1.09004 * 109.46872 * 300.00294 * 17 16 15 38 38 H 1.09001 * 109.47125 * 59.99510 * 17 16 15 39 39 H 1.09001 * 109.46728 * 299.99211 * 18 17 16 40 40 H 1.08989 * 109.47411 * 59.99851 * 18 17 16 41 41 H 0.97006 * 119.99783 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7809 -0.8907 7 6 4.1139 0.5811 1.2484 8 6 3.9936 2.7201 0.0002 9 6 3.6257 3.5677 1.0293 10 17 2.6591 2.9823 2.3472 11 7 4.0197 4.8340 0.9962 12 6 4.7532 5.2904 0.0009 13 7 5.1268 4.5178 -0.9986 14 6 4.7763 3.2350 -1.0337 15 7 5.1765 2.4247 -2.0841 16 6 5.9970 2.9776 -3.1643 17 6 6.2967 1.8818 -4.1893 18 6 7.1543 2.4592 -5.3172 19 6 7.4488 1.3800 -6.3269 20 1 7.0634 0.3821 -6.1788 21 6 8.2105 1.6667 -7.4399 22 7 8.6795 2.8820 -7.6206 23 14 8.5763 0.3289 -8.6912 24 1 7.3013 -0.1864 -9.2520 25 1 9.4075 0.8895 -9.7867 26 1 9.3102 -0.7800 -8.0302 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 5.2024 0.6386 1.2483 31 1 3.7244 1.0750 2.1386 32 1 3.8048 -0.4642 1.2483 33 1 5.0573 6.3267 0.0053 34 1 4.9132 1.4912 -2.1041 35 1 5.4582 3.7912 -3.6499 36 1 6.9326 3.3561 -2.7527 37 1 6.8354 1.0679 -3.7039 38 1 5.3610 1.5036 -4.6009 39 1 6.6159 3.2732 -5.8026 40 1 8.0899 2.8371 -4.9053 41 1 9.2150 3.0838 -8.4038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157643177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:16 Heat of formation + Delta-G solvation = -65.746224 kcal Electronic energy + Delta-G solvation = -25351.135292 eV Core-core repulsion = 21484.476747 eV Total energy + Delta-G solvation = -3866.658545 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.50443 -41.34077 -38.36969 -38.03677 -37.53013 -36.14829 -35.47959 -34.10605 -32.71925 -30.98264 -28.67238 -28.39301 -26.48462 -25.42006 -24.50591 -23.76803 -22.22862 -21.64998 -19.74542 -19.08536 -18.48001 -18.26737 -17.79965 -17.40717 -16.71518 -16.58980 -16.51756 -15.94247 -15.83349 -15.60710 -15.06206 -14.86469 -14.51303 -14.28495 -14.21810 -13.78749 -13.71591 -13.34999 -13.22477 -13.02484 -12.88543 -12.73540 -12.54775 -12.40013 -12.31375 -12.13475 -11.76811 -11.52889 -11.52119 -11.48725 -11.34613 -11.20508 -10.73846 -10.53302 -10.41606 -9.28333 -8.18524 -6.29477 -0.30901 0.10317 0.51571 1.10026 1.42737 1.44960 1.52785 1.67198 1.90309 2.42907 2.66712 3.06105 3.15570 3.26706 3.34278 3.57924 3.72577 3.91087 4.11025 4.23193 4.24452 4.26603 4.32302 4.33368 4.57471 4.70365 4.79384 4.79895 4.87847 4.96990 5.14861 5.17479 5.18906 5.32906 5.51502 5.53579 5.72920 5.83641 5.85814 6.24383 6.38431 6.65867 6.87879 7.07829 7.40045 8.93115 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002757 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.563612 B =10153.672061 C =11389.672975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.466 3.534 4 O -0.522 6.522 5 C -0.024 4.024 6 H 0.131 0.869 7 C -0.151 4.151 8 C -0.243 4.243 9 C 0.267 3.733 10 Cl -0.007 7.007 11 N -0.578 5.578 12 C 0.360 3.640 13 N -0.589 5.589 14 C 0.455 3.545 15 N -0.690 5.690 16 C 0.142 3.858 17 C -0.106 4.106 18 C 0.027 3.973 19 C -0.543 4.543 20 H 0.065 0.935 21 C -0.001 4.001 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.267 1.267 25 H -0.287 1.287 26 H -0.265 1.265 27 H 0.134 0.866 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.237 0.763 34 H 0.419 0.581 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.063 0.937 39 H -0.007 1.007 40 H -0.004 1.004 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.721 -5.782 20.974 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.309 3.691 4 O -0.411 6.411 5 C -0.044 4.044 6 H 0.149 0.851 7 C -0.208 4.208 8 C -0.255 4.255 9 C 0.098 3.902 10 Cl 0.022 6.978 11 N -0.299 5.299 12 C 0.072 3.928 13 N -0.314 5.314 14 C 0.209 3.791 15 N -0.323 5.323 16 C 0.019 3.981 17 C -0.144 4.144 18 C -0.010 4.010 19 C -0.581 4.581 20 H 0.083 0.917 21 C -0.199 4.199 22 N -0.574 5.574 23 Si 0.788 3.212 24 H -0.192 1.192 25 H -0.212 1.212 26 H -0.190 1.190 27 H 0.152 0.848 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.253 0.747 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.011 0.989 40 H 0.014 0.986 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.554 -4.466 20.800 25.225 hybrid contribution -0.337 -1.092 -0.846 1.422 sum -13.892 -5.557 19.954 24.940 Atomic orbital electron populations 1.23549 0.74809 1.05732 1.02361 1.86475 1.24798 1.31999 1.83677 1.23688 0.91965 0.81645 0.71848 1.90701 1.67526 1.37231 1.45601 1.19663 0.87730 0.91920 1.05111 0.85096 1.22080 1.02748 1.01809 0.94190 1.20002 1.09607 0.98030 0.97834 1.21519 0.89904 0.90033 0.88774 1.98376 1.68156 1.85678 1.45585 1.67898 1.18254 1.13961 1.29837 1.25362 0.85623 1.00563 0.81254 1.68155 1.29399 1.04109 1.29725 1.18374 0.86647 0.88193 0.85859 1.44817 1.54503 1.12222 1.20785 1.21311 0.93971 0.96530 0.86315 1.21637 1.00238 0.97296 0.95257 1.18892 0.93992 0.95370 0.92789 1.21667 1.32199 0.97355 1.06861 0.91685 1.25970 0.95716 0.97764 1.00425 1.70092 1.36345 1.21461 1.29457 0.85529 0.78464 0.79073 0.78155 1.19205 1.21235 1.19002 0.84840 0.91964 0.92395 0.89766 0.91524 0.88464 0.74745 0.73984 0.92683 0.91995 0.91262 0.91836 0.98896 0.98572 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -6.29 10.47 -51.35 -0.54 -6.83 16 3 C 0.47 10.12 6.23 71.23 0.44 10.56 16 4 O -0.52 -14.52 13.68 21.94 0.30 -14.22 16 5 C -0.02 -0.44 2.88 -12.29 -0.04 -0.48 16 6 H 0.13 1.95 5.81 -2.39 -0.01 1.93 16 7 C -0.15 -2.15 8.89 71.98 0.64 -1.51 16 8 C -0.24 -5.91 4.42 -19.54 -0.09 -6.00 16 9 C 0.27 6.98 6.50 84.58 0.55 7.53 16 10 Cl -0.01 -0.16 23.26 -2.72 -0.06 -0.22 16 11 N -0.58 -15.45 10.43 -191.11 -1.99 -17.45 16 12 C 0.36 8.81 12.28 180.90 2.22 11.03 16 13 N -0.59 -16.72 9.70 -197.66 -1.92 -18.64 16 14 C 0.46 12.28 7.49 133.12 1.00 13.27 16 15 N -0.69 -17.55 5.64 -344.64 -1.94 -19.50 16 16 C 0.14 4.48 5.73 86.38 0.49 4.97 16 17 C -0.11 -3.82 5.27 30.60 0.16 -3.66 16 18 C 0.03 1.35 4.97 29.85 0.15 1.50 16 19 C -0.54 -29.43 9.11 25.60 0.23 -29.20 16 20 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 21 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 22 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 23 Si 0.96 42.89 29.54 68.60 2.03 44.91 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 29 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.06 5.06 -2.39 -0.01 1.04 16 32 H 0.10 1.02 8.11 -2.38 -0.02 1.01 16 33 H 0.24 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.42 8.48 6.22 -92.70 -0.58 7.90 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -70.38 357.84 4.07 -66.31 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.49 Total: 11.10 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 7.43 Total: 10.01 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -5.57 Total: -111.07 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.24 Total: -21.05 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.06 Total: -0.22 kcal Total: -70.38 4.07 -66.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157643177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.567 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds