Wall clock time and date at job start Tue Mar 31 2020 15:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47104 * 2 1 4 4 C 1.34755 * 117.00031 * 180.02562 * 3 2 1 5 5 O 1.21516 * 120.00052 * 359.97438 * 4 3 2 6 6 C 1.47329 * 119.99878 * 179.97438 * 4 3 2 7 7 C 1.39845 * 121.00107 * 5.25677 * 6 4 3 8 8 N 1.32183 * 118.99051 * 180.25297 * 7 6 4 9 9 C 1.31972 * 121.19176 * 359.73870 * 8 7 6 10 10 C 1.50702 * 118.87966 * 179.97438 * 9 8 7 11 11 N 1.31673 * 122.23841 * 359.97438 * 9 8 7 12 12 C 1.32949 * 120.85601 * 0.02562 * 11 9 8 13 13 N 1.38104 * 120.64069 * 179.97438 * 12 11 9 14 14 C 1.38510 * 119.99848 * 355.35207 * 13 12 11 15 15 C 1.38916 * 119.99800 * 302.04561 * 14 13 12 16 16 H 1.08005 * 119.99686 * 151.10793 * 15 14 13 17 17 C 1.40874 * 120.00166 * 331.10861 * 15 14 13 18 18 N 1.30325 * 119.99973 * 167.27392 * 17 15 14 19 19 Si 1.86799 * 120.00185 * 347.27482 * 17 15 14 20 20 H 1.48500 * 109.46839 * 89.39743 * 19 17 15 21 21 H 1.48495 * 109.47489 * 209.39656 * 19 17 15 22 22 H 1.48500 * 109.47091 * 329.39901 * 19 17 15 23 23 C 1.41111 * 120.00260 * 122.04606 * 14 13 12 24 24 C 1.43203 * 120.00286 * 175.50213 * 23 14 13 25 25 N 9.66568 * 167.87170 * 0.94964 * 2 1 3 26 26 C 1.43205 * 119.99902 * 355.51029 * 23 14 13 27 27 N 6.71664 * 156.25580 * 77.49318 * 2 1 3 28 28 H 1.09008 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46918 * 299.99589 * 1 2 3 30 30 H 1.08997 * 109.47583 * 59.99703 * 1 2 3 31 31 H 1.09003 * 109.46918 * 240.00411 * 2 1 3 32 32 H 1.08997 * 109.47583 * 120.00297 * 2 1 3 33 33 H 1.08005 * 120.50478 * 359.96772 * 7 6 4 34 34 H 1.08994 * 109.47181 * 274.97966 * 10 9 8 35 35 H 1.09000 * 109.46842 * 34.98052 * 10 9 8 36 36 H 1.09003 * 109.46787 * 154.97618 * 10 9 8 37 37 H 0.97001 * 120.00039 * 175.34893 * 13 12 11 38 38 H 0.96997 * 119.99472 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 -0.0005 5 8 4.0902 0.5819 -0.0005 6 6 3.9130 2.9070 -0.0011 7 6 3.0853 4.0288 0.1087 8 7 3.6324 5.2321 0.0988 9 6 4.9386 5.3882 -0.0072 10 6 5.5067 6.7840 -0.0136 11 7 5.7623 4.3658 -0.1076 12 6 5.3036 3.1179 -0.1065 13 7 6.1715 2.0489 -0.2125 14 6 7.5230 2.2719 -0.4179 15 6 7.9474 2.9921 -1.5275 16 1 8.8636 3.5622 -1.4831 17 6 7.1826 2.9787 -2.7105 18 7 7.4351 3.8357 -3.6594 19 14 5.8067 1.7327 -2.9193 20 1 4.5412 2.2990 -2.3872 21 1 5.6398 1.4162 -4.3605 22 1 6.1450 0.4924 -2.1760 23 6 8.4689 1.7676 0.4998 24 6 9.8692 1.9142 0.2382 25 7 10.9799 2.0305 0.0337 26 6 8.0285 1.1090 1.6927 27 7 7.6781 0.5857 2.6403 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0149 3.9140 0.1955 34 1 5.4750 7.1845 -1.0268 35 1 4.9167 7.4194 0.6469 36 1 6.5393 6.7576 0.3346 37 1 5.8346 1.1420 -0.1431 38 1 6.9088 3.8262 -4.4741 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:45 Heat of formation + Delta-G solvation = 27.961271 kcal Electronic energy + Delta-G solvation = -27628.106975 eV Core-core repulsion = 23664.404398 eV Total energy + Delta-G solvation = -3963.702577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36109 -39.99301 -38.06039 -36.67106 -35.43037 -34.76300 -34.20086 -33.48309 -32.59188 -31.81535 -29.95664 -28.82080 -27.33794 -24.27686 -24.13284 -22.83605 -21.56148 -21.22296 -19.37640 -18.24460 -17.67520 -17.56571 -17.02083 -16.81117 -16.42228 -16.29601 -15.57819 -15.10811 -14.36098 -14.20121 -13.90496 -13.40655 -13.23363 -13.06138 -13.00606 -12.82651 -12.75134 -12.46050 -12.19627 -12.13287 -12.02188 -11.87280 -11.80883 -11.67728 -11.57570 -11.52156 -11.34322 -11.01298 -10.74605 -10.71332 -10.55683 -10.29444 -10.15308 -9.55383 -9.04533 -8.72879 -7.89119 -7.64815 -5.44090 0.54895 1.38197 2.01224 2.45724 2.51465 2.61278 2.70187 2.78521 3.24408 3.33951 3.80002 3.93568 4.00810 4.08286 4.17727 4.24472 4.38598 4.61578 4.72999 4.78119 4.78765 5.07355 5.10410 5.15274 5.37578 5.45933 5.52021 5.54700 5.71782 5.72185 5.80741 5.98116 6.06702 6.23017 6.35037 6.44300 6.87766 6.93173 7.17617 7.44547 7.55095 7.69032 7.86209 8.03783 8.43322 8.87740 9.09348 9.10475 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.005761 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.433290 B = 4858.908599 C = 5495.651310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.352 6.352 4 C 0.533 3.467 5 O -0.515 6.515 6 C -0.319 4.319 7 C 0.243 3.757 8 N -0.571 5.571 9 C 0.386 3.614 10 C -0.087 4.087 11 N -0.533 5.533 12 C 0.501 3.499 13 N -0.635 5.635 14 C 0.326 3.674 15 C -0.323 4.323 16 H 0.127 0.873 17 C 0.078 3.922 18 N -0.720 5.720 19 Si 0.901 3.099 20 H -0.258 1.258 21 H -0.276 1.276 22 H -0.240 1.240 23 C -0.290 4.290 24 C 0.326 3.674 25 N -0.523 5.523 26 C 0.304 3.696 27 N -0.527 5.527 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.177 0.823 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.428 0.572 38 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.880 1.978 -1.779 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.268 6.268 4 C 0.379 3.621 5 O -0.405 6.405 6 C -0.332 4.332 7 C 0.075 3.925 8 N -0.290 5.290 9 C 0.119 3.881 10 C -0.145 4.145 11 N -0.255 5.255 12 C 0.256 3.744 13 N -0.271 5.271 14 C 0.224 3.776 15 C -0.350 4.350 16 H 0.145 0.855 17 C -0.154 4.154 18 N -0.337 5.337 19 Si 0.725 3.275 20 H -0.183 1.183 21 H -0.202 1.202 22 H -0.163 1.163 23 C -0.308 4.308 24 C 0.017 3.983 25 N -0.204 5.204 26 C -0.003 4.003 27 N -0.209 5.209 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.194 0.806 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.278 0.722 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.939 2.047 -0.924 15.107 hybrid contribution -1.357 -1.715 -0.597 2.267 sum -16.296 0.332 -1.521 16.371 Atomic orbital electron populations 1.21808 0.92454 1.03022 1.03580 1.23087 0.95339 0.79844 1.03028 1.86507 1.23226 1.32625 1.84481 1.20528 0.80688 0.88849 0.72034 1.90602 1.59430 1.42431 1.48025 1.19993 0.93823 0.93235 1.26153 1.23280 1.00168 0.85722 0.83284 1.68329 1.13663 1.25079 1.21928 1.23349 0.85071 0.95669 0.84059 1.20646 1.02109 0.87766 1.04029 1.68247 1.38838 0.96815 1.21630 1.18243 0.85197 0.87857 0.83151 1.43186 1.06619 1.08248 1.69068 1.16912 0.79017 0.89923 0.91709 1.19948 1.06616 1.16207 0.92195 0.85500 1.26652 0.97702 0.95723 0.95321 1.69383 1.32885 1.26036 1.05406 0.86390 0.80061 0.82041 0.79042 1.18341 1.20227 1.16342 1.12640 0.84595 1.34101 0.99466 1.24482 0.91068 0.90896 0.91853 1.81037 1.12017 1.16614 1.10765 1.25281 0.92691 0.90894 0.91468 1.81139 1.08788 1.17758 1.13212 0.90172 0.91362 0.91412 0.91029 0.90841 0.80578 0.89116 0.89553 0.88945 0.72160 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 37.16 0.38 -0.68 16 2 C 0.06 0.63 6.20 37.16 0.23 0.86 16 3 O -0.35 -4.58 9.58 -40.64 -0.39 -4.97 16 4 C 0.53 8.66 7.58 34.43 0.26 8.92 16 5 O -0.52 -9.46 13.36 -19.28 -0.26 -9.72 16 6 C -0.32 -5.37 4.88 -104.54 -0.51 -5.88 16 7 C 0.24 3.45 10.89 -16.80 -0.18 3.27 16 8 N -0.57 -8.56 10.30 -10.43 -0.11 -8.66 16 9 C 0.39 6.17 7.64 -157.14 -1.20 4.97 16 10 C -0.09 -1.05 10.31 36.01 0.37 -0.68 16 11 N -0.53 -10.05 8.92 -9.70 -0.09 -10.13 16 12 C 0.50 9.63 5.14 -154.69 -0.80 8.83 16 13 N -0.64 -13.08 2.14 -9.38 -0.02 -13.10 16 14 C 0.33 7.10 4.96 -83.51 -0.41 6.68 16 15 C -0.32 -7.13 7.99 -38.33 -0.31 -7.44 16 16 H 0.13 3.01 7.50 -52.48 -0.39 2.62 16 17 C 0.08 1.64 5.34 -17.19 -0.09 1.55 16 18 N -0.72 -15.11 13.90 55.60 0.77 -14.33 16 19 Si 0.90 17.30 24.15 -169.99 -4.11 13.20 16 20 H -0.26 -4.86 5.20 56.52 0.29 -4.56 16 21 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 22 H -0.24 -4.76 6.68 56.52 0.38 -4.38 16 23 C -0.29 -6.59 5.88 -104.95 -0.62 -7.20 16 24 C 0.33 7.67 14.05 -22.49 -0.32 7.36 16 25 N -0.52 -12.75 18.53 41.81 0.77 -11.98 16 26 C 0.30 7.10 14.83 -22.41 -0.33 6.77 16 27 N -0.53 -12.71 18.55 41.91 0.78 -11.93 16 28 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.18 1.85 7.72 -52.48 -0.40 1.44 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.43 8.90 4.61 -40.82 -0.19 8.71 16 38 H 0.30 5.70 8.28 -40.82 -0.34 5.36 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -27.57 347.65 -4.56 -32.13 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.63 Total: 6.94 kcal Atomic # 6 Polarization: 30.85 SS G_CDS: -3.52 Total: 27.33 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: 2.11 Total: -70.14 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.65 Total: -14.69 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -4.11 Total: 13.20 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.57 -4.56 -32.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.089 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds