Wall clock time and date at job start Tue Mar 31 2020 15:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47104 * 2 1 4 4 C 1.34755 * 117.00031 * 180.02562 * 3 2 1 5 5 O 1.21516 * 120.00052 * 359.97438 * 4 3 2 6 6 C 1.47329 * 119.99878 * 179.97438 * 4 3 2 7 7 C 1.39845 * 121.00107 * 5.25677 * 6 4 3 8 8 N 1.32183 * 118.99051 * 180.25297 * 7 6 4 9 9 C 1.31972 * 121.19176 * 359.73870 * 8 7 6 10 10 C 1.50702 * 118.87966 * 179.97438 * 9 8 7 11 11 N 1.31673 * 122.23841 * 359.97438 * 9 8 7 12 12 C 1.32949 * 120.85601 * 0.02562 * 11 9 8 13 13 N 1.38104 * 120.64069 * 179.97438 * 12 11 9 14 14 C 1.38510 * 119.99848 * 355.35207 * 13 12 11 15 15 C 1.38916 * 119.99800 * 302.04561 * 14 13 12 16 16 H 1.08005 * 119.99686 * 151.10793 * 15 14 13 17 17 C 1.40874 * 120.00166 * 331.10861 * 15 14 13 18 18 N 1.30325 * 119.99973 * 167.27392 * 17 15 14 19 19 Si 1.86799 * 120.00185 * 347.27482 * 17 15 14 20 20 H 1.48500 * 109.46839 * 89.39743 * 19 17 15 21 21 H 1.48495 * 109.47489 * 209.39656 * 19 17 15 22 22 H 1.48500 * 109.47091 * 329.39901 * 19 17 15 23 23 C 1.41111 * 120.00260 * 122.04606 * 14 13 12 24 24 C 1.43203 * 120.00286 * 175.50213 * 23 14 13 25 25 N 9.66568 * 167.87170 * 0.94964 * 2 1 3 26 26 C 1.43205 * 119.99902 * 355.51029 * 23 14 13 27 27 N 6.71664 * 156.25580 * 77.49318 * 2 1 3 28 28 H 1.09008 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46918 * 299.99589 * 1 2 3 30 30 H 1.08997 * 109.47583 * 59.99703 * 1 2 3 31 31 H 1.09003 * 109.46918 * 240.00411 * 2 1 3 32 32 H 1.08997 * 109.47583 * 120.00297 * 2 1 3 33 33 H 1.08005 * 120.50478 * 359.96772 * 7 6 4 34 34 H 1.08994 * 109.47181 * 274.97966 * 10 9 8 35 35 H 1.09000 * 109.46842 * 34.98052 * 10 9 8 36 36 H 1.09003 * 109.46787 * 154.97618 * 10 9 8 37 37 H 0.97001 * 120.00039 * 175.34893 * 13 12 11 38 38 H 0.96997 * 119.99472 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 -0.0005 5 8 4.0902 0.5819 -0.0005 6 6 3.9130 2.9070 -0.0011 7 6 3.0853 4.0288 0.1087 8 7 3.6324 5.2321 0.0988 9 6 4.9386 5.3882 -0.0072 10 6 5.5067 6.7840 -0.0136 11 7 5.7623 4.3658 -0.1076 12 6 5.3036 3.1179 -0.1065 13 7 6.1715 2.0489 -0.2125 14 6 7.5230 2.2719 -0.4179 15 6 7.9474 2.9921 -1.5275 16 1 8.8636 3.5622 -1.4831 17 6 7.1826 2.9787 -2.7105 18 7 7.4351 3.8357 -3.6594 19 14 5.8067 1.7327 -2.9193 20 1 4.5412 2.2990 -2.3872 21 1 5.6398 1.4162 -4.3605 22 1 6.1450 0.4924 -2.1760 23 6 8.4689 1.7676 0.4998 24 6 9.8692 1.9142 0.2382 25 7 10.9799 2.0305 0.0337 26 6 8.0285 1.1090 1.6927 27 7 7.6781 0.5857 2.6403 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0149 3.9140 0.1955 34 1 5.4750 7.1845 -1.0268 35 1 4.9167 7.4194 0.6469 36 1 6.5393 6.7576 0.3346 37 1 5.8346 1.1420 -0.1431 38 1 6.9088 3.8262 -4.4741 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:44 Heat of formation + Delta-G solvation = 13.038726 kcal Electronic energy + Delta-G solvation = -27628.754065 eV Core-core repulsion = 23664.404398 eV Total energy + Delta-G solvation = -3964.349667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.63850 -41.16858 -39.57521 -37.89472 -37.18143 -36.63642 -35.82614 -34.68546 -34.05936 -32.61079 -31.46303 -29.94476 -29.08525 -25.49315 -25.28269 -23.80192 -23.04663 -22.52297 -21.05319 -19.56481 -19.25374 -18.89818 -18.30882 -18.14402 -17.83930 -17.61933 -16.96756 -16.34878 -15.64172 -15.22174 -14.95818 -14.94628 -14.78050 -14.62747 -14.48838 -14.16656 -14.00547 -13.66260 -13.58199 -13.51327 -13.43035 -13.22334 -13.12736 -13.01376 -12.94645 -12.87737 -12.82594 -12.51270 -12.46716 -12.06897 -11.72963 -11.58906 -11.49883 -10.91161 -10.33344 -10.28181 -9.53350 -9.25278 -7.23312 -0.69726 0.00283 0.43738 1.04130 1.16489 1.23219 1.28326 1.40537 1.75055 1.80349 1.94872 2.11695 2.39442 2.45422 2.71946 2.95839 3.12813 3.27297 3.44905 3.53522 3.64948 4.00918 4.01905 4.07325 4.28085 4.35494 4.38261 4.63054 4.78265 4.80353 4.83059 4.94910 4.95081 5.06731 5.19796 5.32210 5.39887 5.46599 5.64384 5.68926 6.00882 6.20221 6.39976 6.54900 7.02636 7.12480 7.22682 7.49489 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.005761 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.433290 B = 4858.908599 C = 5495.651310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.342 6.342 4 C 0.534 3.466 5 O -0.541 6.541 6 C -0.330 4.330 7 C 0.256 3.744 8 N -0.564 5.564 9 C 0.377 3.623 10 C -0.085 4.085 11 N -0.563 5.563 12 C 0.482 3.518 13 N -0.645 5.645 14 C 0.335 3.665 15 C -0.322 4.322 16 H 0.105 0.895 17 C 0.064 3.936 18 N -0.729 5.729 19 Si 0.932 3.068 20 H -0.252 1.252 21 H -0.261 1.261 22 H -0.254 1.254 23 C -0.303 4.303 24 C 0.330 3.670 25 N -0.544 5.544 26 C 0.311 3.689 27 N -0.545 5.545 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.217 0.783 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.425 0.575 38 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.765 2.672 -2.383 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.257 6.257 4 C 0.381 3.619 5 O -0.433 6.433 6 C -0.342 4.342 7 C 0.088 3.912 8 N -0.282 5.282 9 C 0.111 3.889 10 C -0.143 4.143 11 N -0.286 5.286 12 C 0.238 3.762 13 N -0.282 5.282 14 C 0.232 3.768 15 C -0.349 4.349 16 H 0.123 0.877 17 C -0.168 4.168 18 N -0.347 5.347 19 Si 0.755 3.245 20 H -0.176 1.176 21 H -0.187 1.187 22 H -0.178 1.178 23 C -0.322 4.322 24 C 0.023 3.977 25 N -0.226 5.226 26 C 0.005 3.995 27 N -0.228 5.228 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.234 0.766 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.275 0.725 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.868 2.789 -1.534 18.149 hybrid contribution -0.574 -1.830 -0.457 1.971 sum -18.442 0.959 -1.991 18.574 Atomic orbital electron populations 1.21831 0.89511 1.04576 1.04129 1.23450 0.97549 0.78455 1.02866 1.86505 1.21192 1.34335 1.83696 1.20516 0.81581 0.88308 0.71509 1.90587 1.60259 1.43159 1.49335 1.20191 0.93117 0.94534 1.26396 1.23927 1.01584 0.84545 0.81145 1.68471 1.13036 1.25254 1.21468 1.24072 0.85458 0.96363 0.82959 1.20787 1.02065 0.86104 1.05329 1.68257 1.40223 0.97293 1.22827 1.18512 0.86007 0.87766 0.83883 1.43107 1.06032 1.08685 1.70424 1.16773 0.79809 0.89237 0.90956 1.19858 1.05937 1.16097 0.93001 0.87694 1.26955 0.98516 0.96552 0.94751 1.69348 1.33256 1.26190 1.05888 0.85916 0.78900 0.80266 0.79461 1.17625 1.18710 1.17788 1.12703 0.84421 1.35164 0.99862 1.24633 0.91210 0.90452 0.91397 1.81016 1.12479 1.17660 1.11479 1.25328 0.92282 0.90566 0.91339 1.81120 1.09296 1.18634 1.13741 0.88113 0.90786 0.90837 0.91199 0.91188 0.76624 0.87872 0.87017 0.89479 0.72455 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 10.29 71.98 0.74 -0.84 16 2 C 0.05 0.94 6.20 71.98 0.45 1.39 16 3 O -0.34 -8.11 9.58 -56.66 -0.54 -8.66 16 4 C 0.53 16.61 7.58 70.21 0.53 17.14 16 5 O -0.54 -19.68 13.36 19.78 0.26 -19.42 16 6 C -0.33 -10.58 4.88 -19.81 -0.10 -10.68 16 7 C 0.26 6.52 10.89 85.03 0.93 7.44 16 8 N -0.56 -15.38 10.30 -186.92 -1.93 -17.31 16 9 C 0.38 11.44 7.64 138.73 1.06 12.50 16 10 C -0.08 -1.89 10.31 71.24 0.73 -1.15 16 11 N -0.56 -20.87 8.92 -184.59 -1.65 -22.52 16 12 C 0.48 18.25 5.14 133.68 0.69 18.94 16 13 N -0.64 -26.66 2.14 -183.60 -0.39 -27.05 16 14 C 0.33 14.79 4.96 38.96 0.19 14.98 16 15 C -0.32 -14.42 7.99 23.08 0.18 -14.23 16 16 H 0.11 5.13 7.50 -2.91 -0.02 5.10 16 17 C 0.06 2.67 5.34 85.56 0.46 3.13 16 18 N -0.73 -29.93 13.90 21.99 0.31 -29.63 16 19 Si 0.93 34.61 24.15 68.60 1.66 36.27 16 20 H -0.25 -9.02 5.20 99.48 0.52 -8.50 16 21 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 22 H -0.25 -10.00 6.68 99.48 0.66 -9.34 16 23 C -0.30 -14.04 5.88 -20.08 -0.12 -14.16 16 24 C 0.33 15.91 14.05 88.34 1.24 17.16 16 25 N -0.54 -27.00 18.53 19.00 0.35 -26.65 16 26 C 0.31 14.77 14.83 88.31 1.31 16.08 16 27 N -0.54 -26.56 18.55 19.03 0.35 -26.21 16 28 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.22 3.61 7.72 -2.91 -0.02 3.59 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.42 17.86 4.61 -92.71 -0.43 17.43 16 38 H 0.32 11.41 8.28 -92.71 -0.77 10.64 16 Total: -1.00 -59.25 347.65 7.21 -52.03 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.49 Total: 21.43 kcal Atomic # 6 Polarization: 59.40 SS G_CDS: 8.30 Total: 67.69 kcal Atomic # 7 Polarization: -146.40 SS G_CDS: -2.96 Total: -149.36 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.28 Total: -28.07 kcal Atomic # 14 Polarization: 34.61 SS G_CDS: 1.66 Total: 36.27 kcal Total: -59.25 7.21 -52.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.072 kcal (2) G-P(sol) polarization free energy of solvation -59.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds