Wall clock time and date at job start Tue Mar 31 2020 15:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46923 * 2 1 4 4 C 1.34650 * 116.99946 * 179.97438 * 3 2 1 5 5 O 1.21395 * 119.99616 * 0.02562 * 4 3 2 6 6 C 1.48341 * 120.00232 * 179.97438 * 4 3 2 7 7 N 1.33351 * 120.51520 * 354.02237 * 6 4 3 8 8 C 1.31528 * 120.92852 * 180.27164 * 7 6 4 9 9 N 1.31862 * 122.01455 * 0.02562 * 8 7 6 10 10 C 1.32794 * 120.92317 * 0.02562 * 9 8 7 11 11 N 1.38714 * 120.50959 * 179.97438 * 10 9 8 12 12 C 1.38435 * 120.00237 * 1.74384 * 11 10 9 13 13 C 1.38945 * 119.99753 * 301.52925 * 12 11 10 14 14 H 1.08006 * 119.99528 * 155.88456 * 13 12 11 15 15 C 1.40859 * 120.00052 * 335.88380 * 13 12 11 16 16 N 1.30316 * 119.99986 * 349.60629 * 15 13 12 17 17 Si 1.86802 * 119.99833 * 169.61248 * 15 13 12 18 18 H 1.48498 * 109.47387 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47316 * 119.99898 * 17 15 13 20 20 H 1.48506 * 109.47148 * 239.99690 * 17 15 13 21 21 C 1.41125 * 120.00399 * 121.52534 * 12 11 10 22 22 C 1.43196 * 120.00378 * 184.76103 * 21 12 11 23 23 N 9.42677 * 151.11954 * 198.96096 * 4 1 2 24 24 C 1.43206 * 119.99624 * 4.76529 * 21 12 11 25 25 N 9.45581 * 142.10721 * 33.80573 * 2 1 3 26 26 C 1.39118 * 120.51364 * 174.30406 * 6 4 3 27 27 C 1.50696 * 120.90768 * 359.70213 * 26 6 4 28 28 H 1.08998 * 109.47408 * 59.99807 * 1 2 3 29 29 H 1.09001 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47272 * 300.00068 * 1 2 3 31 31 H 1.08999 * 109.46790 * 239.99777 * 2 1 3 32 32 H 1.09004 * 109.46792 * 119.99920 * 2 1 3 33 33 H 1.08006 * 118.98884 * 179.97438 * 8 7 6 34 34 H 0.96998 * 119.99640 * 181.74062 * 11 10 9 35 35 H 0.97000 * 120.00240 * 185.04464 * 16 15 13 36 36 H 1.08997 * 109.46787 * 83.54192 * 27 26 6 37 37 H 1.08999 * 109.46905 * 203.54628 * 27 26 6 38 38 H 1.09006 * 109.46983 * 323.54237 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0883 0.5827 0.0005 6 6 3.9158 2.9162 0.0000 7 7 3.1189 3.9785 -0.1207 8 6 3.6134 5.1973 -0.1274 9 7 4.9071 5.4274 -0.0171 10 6 5.7703 4.4258 0.1061 11 7 7.1295 4.6777 0.2210 12 6 7.5923 5.9822 0.2443 13 6 7.3228 6.8339 -0.8200 14 1 7.3202 7.9033 -0.6684 15 6 7.0532 6.3027 -2.0964 16 7 7.2528 5.0364 -2.3306 17 14 6.4096 7.4135 -3.4534 18 1 6.2706 8.7982 -2.9355 19 1 7.3615 7.4051 -4.5932 20 1 5.0856 6.9202 -3.9106 21 6 8.3376 6.4471 1.3488 22 6 8.7289 7.8227 1.4207 23 7 9.0394 8.9133 1.4825 24 6 8.7026 5.5430 2.3977 25 7 8.9922 4.8257 3.2312 26 6 5.2878 3.1131 0.1195 27 6 6.2284 1.9440 0.2587 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9393 6.0352 -0.2273 34 1 7.7558 3.9397 0.2852 35 1 7.1375 4.6849 -3.2273 36 1 6.4604 1.5449 -0.7287 37 1 7.1479 2.2731 0.7428 38 1 5.7572 1.1685 0.8626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158212919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:12 Heat of formation + Delta-G solvation = 26.151231 kcal Electronic energy + Delta-G solvation = -26919.367587 eV Core-core repulsion = 22955.586520 eV Total energy + Delta-G solvation = -3963.781066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13720 -39.99944 -37.66229 -36.79254 -35.43686 -34.76849 -34.15892 -33.37977 -32.42616 -31.74862 -29.76501 -27.71877 -27.15919 -25.32904 -23.31806 -22.43182 -22.01060 -21.01074 -19.24857 -18.83948 -17.53721 -17.20529 -16.71032 -16.62489 -16.31560 -15.96920 -14.96458 -14.64598 -14.33209 -14.13650 -14.03823 -13.74980 -13.43760 -13.01312 -12.86033 -12.69421 -12.64683 -12.39111 -12.32017 -12.06044 -11.86000 -11.76718 -11.75477 -11.68613 -11.57822 -11.29044 -10.97434 -10.96349 -10.66457 -10.59173 -10.46536 -10.40118 -10.14841 -9.58409 -8.83778 -8.47579 -7.89961 -7.26641 -5.44414 0.69672 1.45755 2.11145 2.43337 2.61843 2.68712 2.77693 2.84086 3.37405 3.51480 3.80787 4.01246 4.15499 4.18680 4.21500 4.30027 4.60952 4.74347 4.79119 4.92051 4.98635 5.07006 5.13990 5.21873 5.46154 5.56467 5.57961 5.59908 5.76500 5.89688 6.05705 6.16264 6.17463 6.26914 6.37665 6.59667 6.98493 7.03348 7.19515 7.53397 7.66219 7.71401 8.00376 8.18384 8.63452 8.90417 9.10051 9.14028 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.004149 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.436245 B = 6746.831913 C = 7920.809019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.332 6.332 4 C 0.528 3.472 5 O -0.491 6.491 6 C 0.150 3.850 7 N -0.531 5.531 8 C 0.324 3.676 9 N -0.530 5.530 10 C 0.476 3.524 11 N -0.618 5.618 12 C 0.377 3.623 13 C -0.342 4.342 14 H 0.114 0.886 15 C 0.078 3.922 16 N -0.733 5.733 17 Si 0.927 3.073 18 H -0.245 1.245 19 H -0.264 1.264 20 H -0.263 1.263 21 C -0.310 4.310 22 C 0.327 3.673 23 N -0.532 5.532 24 C 0.306 3.694 25 N -0.534 5.534 26 C -0.177 4.177 27 C -0.101 4.101 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.197 0.803 34 H 0.413 0.587 35 H 0.301 0.699 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.993 -9.173 -5.752 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.248 6.248 4 C 0.371 3.629 5 O -0.378 6.378 6 C 0.009 3.991 7 N -0.252 5.252 8 C 0.034 3.966 9 N -0.253 5.253 10 C 0.229 3.771 11 N -0.242 5.242 12 C 0.274 3.726 13 C -0.370 4.370 14 H 0.131 0.869 15 C -0.152 4.152 16 N -0.352 5.352 17 Si 0.748 3.252 18 H -0.168 1.168 19 H -0.189 1.189 20 H -0.187 1.187 21 C -0.329 4.329 22 C 0.019 3.981 23 N -0.214 5.214 24 C -0.001 4.001 25 N -0.216 5.216 26 C -0.189 4.189 27 C -0.159 4.159 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.214 0.786 34 H 0.253 0.747 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.507 -8.299 -4.599 14.914 hybrid contribution 0.314 -0.893 -1.020 1.391 sum -11.193 -9.192 -5.619 15.535 Atomic orbital electron populations 1.21789 0.92507 1.02760 1.03784 1.23084 0.95560 0.80270 1.02590 1.86686 1.23068 1.31732 1.83320 1.20800 0.80850 0.88414 0.72805 1.90800 1.60155 1.41676 1.45200 1.19645 0.89034 0.90866 0.99577 1.68311 1.39309 0.99213 1.18412 1.24628 0.88920 0.92938 0.90151 1.68080 1.03677 1.34660 1.18840 1.17923 0.85917 0.87231 0.86036 1.41431 1.02386 1.07833 1.72572 1.16672 0.86506 0.80503 0.88955 1.20208 1.29104 0.96881 0.90793 0.86850 1.26510 0.91267 0.95754 1.01700 1.69431 1.26454 1.14240 1.25069 0.85873 0.79524 0.81350 0.78448 1.16802 1.18905 1.18698 1.12792 1.33139 0.85599 1.01334 1.24581 0.90602 0.91289 0.91627 1.81048 1.16782 1.12491 1.11074 1.25285 0.90904 0.92431 0.91470 1.81132 1.16878 1.11192 1.12442 1.20838 0.94625 0.95922 1.07530 1.20760 0.96950 0.94973 1.03209 0.91344 0.90332 0.91356 0.91162 0.91151 0.78612 0.74750 0.88668 0.90354 0.92127 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.72 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.33 -4.59 10.08 -40.36 -0.41 -4.99 16 4 C 0.53 8.15 7.91 34.89 0.28 8.42 16 5 O -0.49 -7.77 13.29 -19.18 -0.25 -8.02 16 6 C 0.15 2.49 6.78 -82.72 -0.56 1.93 16 7 N -0.53 -8.71 10.25 -11.23 -0.12 -8.83 16 8 C 0.32 5.11 12.27 -92.32 -1.13 3.98 16 9 N -0.53 -9.59 8.63 -13.78 -0.12 -9.71 16 10 C 0.48 8.66 6.17 -154.69 -0.95 7.70 16 11 N -0.62 -11.48 3.28 -9.57 -0.03 -11.51 16 12 C 0.38 7.63 5.53 -83.52 -0.46 7.16 16 13 C -0.34 -6.85 7.58 -38.33 -0.29 -7.14 16 14 H 0.11 2.33 7.08 -52.48 -0.37 1.96 16 15 C 0.08 1.44 4.77 -17.20 -0.08 1.36 16 16 N -0.73 -13.45 11.28 55.60 0.63 -12.82 16 17 Si 0.93 14.74 29.58 -169.99 -5.03 9.71 16 18 H -0.25 -3.99 7.11 56.52 0.40 -3.59 16 19 H -0.26 -4.16 7.11 56.52 0.40 -3.75 16 20 H -0.26 -4.21 7.11 56.52 0.40 -3.81 16 21 C -0.31 -6.65 5.88 -104.95 -0.62 -7.27 16 22 C 0.33 7.38 13.93 -22.49 -0.31 7.07 16 23 N -0.53 -12.49 18.53 41.82 0.78 -11.72 16 24 C 0.31 6.75 14.79 -22.43 -0.33 6.42 16 25 N -0.53 -12.22 18.55 41.88 0.78 -11.44 16 26 C -0.18 -2.98 5.97 -103.69 -0.62 -3.60 16 27 C -0.10 -1.51 8.54 36.00 0.31 -1.20 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.20 2.37 8.06 -52.48 -0.42 1.94 16 34 H 0.41 7.25 6.80 -40.82 -0.28 6.97 16 35 H 0.30 5.08 8.29 -40.82 -0.34 4.74 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 0.87 6.41 -51.93 -0.33 0.54 16 38 H 0.09 1.33 5.96 -51.93 -0.31 1.02 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -25.72 352.84 -6.01 -31.73 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -3.38 Total: 7.36 kcal Atomic # 6 Polarization: 29.09 SS G_CDS: -4.17 Total: 24.93 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: 1.91 Total: -66.03 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.66 Total: -13.01 kcal Atomic # 14 Polarization: 14.74 SS G_CDS: -5.03 Total: 9.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -25.72 -6.01 -31.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158212919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.882 kcal (2) G-P(sol) polarization free energy of solvation -25.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds