Wall clock time and date at job start Tue Mar 31 2020 15:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46923 * 2 1 4 4 C 1.34650 * 116.99946 * 179.97438 * 3 2 1 5 5 O 1.21395 * 119.99616 * 0.02562 * 4 3 2 6 6 C 1.48341 * 120.00232 * 179.97438 * 4 3 2 7 7 N 1.33351 * 120.51520 * 354.02237 * 6 4 3 8 8 C 1.31528 * 120.92852 * 180.27164 * 7 6 4 9 9 N 1.31862 * 122.01455 * 0.02562 * 8 7 6 10 10 C 1.32794 * 120.92317 * 0.02562 * 9 8 7 11 11 N 1.38714 * 120.50959 * 179.97438 * 10 9 8 12 12 C 1.38435 * 120.00237 * 1.74384 * 11 10 9 13 13 C 1.38945 * 119.99753 * 301.52925 * 12 11 10 14 14 H 1.08006 * 119.99528 * 155.88456 * 13 12 11 15 15 C 1.40859 * 120.00052 * 335.88380 * 13 12 11 16 16 N 1.30316 * 119.99986 * 349.60629 * 15 13 12 17 17 Si 1.86802 * 119.99833 * 169.61248 * 15 13 12 18 18 H 1.48498 * 109.47387 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47316 * 119.99898 * 17 15 13 20 20 H 1.48506 * 109.47148 * 239.99690 * 17 15 13 21 21 C 1.41125 * 120.00399 * 121.52534 * 12 11 10 22 22 C 1.43196 * 120.00378 * 184.76103 * 21 12 11 23 23 N 9.42677 * 151.11954 * 198.96096 * 4 1 2 24 24 C 1.43206 * 119.99624 * 4.76529 * 21 12 11 25 25 N 9.45581 * 142.10721 * 33.80573 * 2 1 3 26 26 C 1.39118 * 120.51364 * 174.30406 * 6 4 3 27 27 C 1.50696 * 120.90768 * 359.70213 * 26 6 4 28 28 H 1.08998 * 109.47408 * 59.99807 * 1 2 3 29 29 H 1.09001 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47272 * 300.00068 * 1 2 3 31 31 H 1.08999 * 109.46790 * 239.99777 * 2 1 3 32 32 H 1.09004 * 109.46792 * 119.99920 * 2 1 3 33 33 H 1.08006 * 118.98884 * 179.97438 * 8 7 6 34 34 H 0.96998 * 119.99640 * 181.74062 * 11 10 9 35 35 H 0.97000 * 120.00240 * 185.04464 * 16 15 13 36 36 H 1.08997 * 109.46787 * 83.54192 * 27 26 6 37 37 H 1.08999 * 109.46905 * 203.54628 * 27 26 6 38 38 H 1.09006 * 109.46983 * 323.54237 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0883 0.5827 0.0005 6 6 3.9158 2.9162 0.0000 7 7 3.1189 3.9785 -0.1207 8 6 3.6134 5.1973 -0.1274 9 7 4.9071 5.4274 -0.0171 10 6 5.7703 4.4258 0.1061 11 7 7.1295 4.6777 0.2210 12 6 7.5923 5.9822 0.2443 13 6 7.3228 6.8339 -0.8200 14 1 7.3202 7.9033 -0.6684 15 6 7.0532 6.3027 -2.0964 16 7 7.2528 5.0364 -2.3306 17 14 6.4096 7.4135 -3.4534 18 1 6.2706 8.7982 -2.9355 19 1 7.3615 7.4051 -4.5932 20 1 5.0856 6.9202 -3.9106 21 6 8.3376 6.4471 1.3488 22 6 8.7289 7.8227 1.4207 23 7 9.0394 8.9133 1.4825 24 6 8.7026 5.5430 2.3977 25 7 8.9922 4.8257 3.2312 26 6 5.2878 3.1131 0.1195 27 6 6.2284 1.9440 0.2587 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9393 6.0352 -0.2273 34 1 7.7558 3.9397 0.2852 35 1 7.1375 4.6849 -3.2273 36 1 6.4604 1.5449 -0.7287 37 1 7.1479 2.2731 0.7428 38 1 5.7572 1.1685 0.8626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158212919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:12 Heat of formation + Delta-G solvation = 15.381881 kcal Electronic energy + Delta-G solvation = -26919.834581 eV Core-core repulsion = 22955.586520 eV Total energy + Delta-G solvation = -3964.248060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.39799 -41.18044 -39.14476 -37.88652 -37.12421 -36.52882 -35.60616 -34.66186 -33.84366 -32.54079 -31.25228 -28.98250 -28.71725 -26.56614 -24.32975 -23.68632 -23.26112 -22.31427 -20.79078 -20.10897 -19.10301 -18.41990 -18.08840 -17.79368 -17.59453 -17.30592 -16.19067 -15.99950 -15.55088 -15.35479 -15.26362 -14.95239 -14.59498 -14.46095 -14.37439 -13.90599 -13.89477 -13.74630 -13.49684 -13.38274 -13.34495 -13.32827 -13.15190 -12.93279 -12.80479 -12.71035 -12.50232 -12.36643 -11.96160 -11.81230 -11.65673 -11.53062 -11.51297 -10.91622 -10.15282 -9.96964 -9.34736 -8.72969 -7.08576 -0.57972 0.11197 0.67474 1.33955 1.37485 1.39118 1.53208 1.54061 2.01789 2.08302 2.12193 2.23195 2.54674 2.66361 2.92136 3.03901 3.34249 3.47254 3.60417 3.74641 3.85104 4.03675 4.05042 4.09264 4.33251 4.38138 4.58888 4.68993 4.70842 4.76006 4.89882 4.95315 5.01169 5.12930 5.27258 5.40249 5.43571 5.63077 5.75093 6.04059 6.15831 6.46031 6.57717 6.72753 7.17597 7.29672 7.36555 7.69543 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.004149 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.436245 B = 6746.831913 C = 7920.809019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.340 6.340 4 C 0.530 3.470 5 O -0.499 6.499 6 C 0.143 3.857 7 N -0.532 5.532 8 C 0.322 3.678 9 N -0.550 5.550 10 C 0.464 3.536 11 N -0.619 5.619 12 C 0.372 3.628 13 C -0.339 4.339 14 H 0.105 0.895 15 C 0.056 3.944 16 N -0.733 5.733 17 Si 0.977 3.023 18 H -0.252 1.252 19 H -0.257 1.257 20 H -0.260 1.260 21 C -0.324 4.324 22 C 0.331 3.669 23 N -0.556 5.556 24 C 0.313 3.687 25 N -0.555 5.555 26 C -0.184 4.184 27 C -0.093 4.093 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.231 0.769 34 H 0.415 0.585 35 H 0.312 0.688 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 -9.891 -7.175 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.255 6.255 4 C 0.373 3.627 5 O -0.387 6.387 6 C 0.001 3.999 7 N -0.253 5.253 8 C 0.033 3.967 9 N -0.273 5.273 10 C 0.218 3.782 11 N -0.244 5.244 12 C 0.268 3.732 13 C -0.366 4.366 14 H 0.123 0.877 15 C -0.174 4.174 16 N -0.351 5.351 17 Si 0.796 3.204 18 H -0.175 1.175 19 H -0.181 1.181 20 H -0.184 1.184 21 C -0.344 4.344 22 C 0.025 3.975 23 N -0.240 5.240 24 C 0.007 3.993 25 N -0.239 5.239 26 C -0.196 4.196 27 C -0.151 4.151 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.247 0.753 34 H 0.255 0.745 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.120 -9.049 -6.015 17.035 hybrid contribution 0.674 -0.755 -0.678 1.219 sum -12.446 -9.804 -6.693 17.200 Atomic orbital electron populations 1.21822 0.90315 1.04458 1.03647 1.23462 0.97249 0.78521 1.03120 1.86674 1.21917 1.34139 1.82795 1.20621 0.81492 0.87819 0.72815 1.90789 1.60511 1.41732 1.45691 1.19938 0.89158 0.91688 0.99119 1.68390 1.39281 0.99404 1.18244 1.25323 0.88671 0.93731 0.88975 1.68097 1.04600 1.35078 1.19505 1.18077 0.85711 0.87901 0.86543 1.41331 1.02742 1.07192 1.73136 1.16636 0.86581 0.81398 0.88598 1.20334 1.28171 0.96549 0.91511 0.87689 1.26985 0.91316 0.96725 1.02403 1.69412 1.24876 1.14741 1.26085 0.85138 0.79163 0.79548 0.76526 1.17525 1.18150 1.18398 1.12850 1.34441 0.85080 1.01994 1.24771 0.90186 0.91466 0.91116 1.81031 1.17983 1.13087 1.11859 1.25360 0.90466 0.92181 0.91247 1.81119 1.17925 1.11795 1.13055 1.20985 0.95153 0.95896 1.07527 1.20712 0.96623 0.94307 1.03450 0.91430 0.87681 0.91507 0.90629 0.90671 0.75296 0.74504 0.87585 0.89866 0.91929 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.29 71.98 0.74 -1.06 16 2 C 0.05 0.90 6.19 71.98 0.45 1.35 16 3 O -0.34 -8.91 10.08 -55.59 -0.56 -9.47 16 4 C 0.53 15.74 7.91 70.51 0.56 16.30 16 5 O -0.50 -15.25 13.29 20.18 0.27 -14.98 16 6 C 0.14 4.59 6.78 41.82 0.28 4.87 16 7 N -0.53 -16.67 10.25 -189.45 -1.94 -18.61 16 8 C 0.32 9.64 12.27 180.94 2.22 11.86 16 9 N -0.55 -19.30 8.63 -197.52 -1.70 -21.00 16 10 C 0.46 16.55 6.17 133.22 0.82 17.37 16 11 N -0.62 -22.77 3.28 -184.20 -0.60 -23.37 16 12 C 0.37 14.96 5.53 38.98 0.22 15.18 16 13 C -0.34 -13.32 7.58 23.08 0.17 -13.14 16 14 H 0.11 4.29 7.08 -2.91 -0.02 4.27 16 15 C 0.06 1.98 4.77 85.56 0.41 2.39 16 16 N -0.73 -25.70 11.28 21.98 0.25 -25.45 16 17 Si 0.98 28.48 29.58 68.60 2.03 30.50 16 18 H -0.25 -7.62 7.11 99.48 0.71 -6.92 16 19 H -0.26 -7.22 7.11 99.48 0.71 -6.51 16 20 H -0.26 -7.46 7.11 99.48 0.71 -6.75 16 21 C -0.32 -14.00 5.88 -20.08 -0.12 -14.12 16 22 C 0.33 15.08 13.93 88.33 1.23 16.31 16 23 N -0.56 -26.30 18.53 19.00 0.35 -25.95 16 24 C 0.31 13.92 14.79 88.32 1.31 15.22 16 25 N -0.56 -25.57 18.55 19.02 0.35 -25.21 16 26 C -0.18 -6.06 5.97 -19.26 -0.12 -6.17 16 27 C -0.09 -2.73 8.54 71.23 0.61 -2.12 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.23 4.97 8.06 -2.91 -0.02 4.95 16 34 H 0.41 14.52 6.80 -92.71 -0.63 13.89 16 35 H 0.31 9.85 8.29 -92.71 -0.77 9.08 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 1.77 6.41 -2.39 -0.02 1.76 16 38 H 0.09 2.58 5.96 -2.38 -0.01 2.57 16 Total: -1.00 -53.46 352.84 7.75 -45.71 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.53 Total: 23.61 kcal Atomic # 6 Polarization: 55.46 SS G_CDS: 8.78 Total: 64.24 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -3.30 Total: -139.61 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.29 Total: -24.45 kcal Atomic # 14 Polarization: 28.48 SS G_CDS: 2.03 Total: 30.50 kcal Total: -53.46 7.75 -45.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158212919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.093 kcal (2) G-P(sol) polarization free energy of solvation -53.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds