Wall clock time and date at job start Tue Mar 31 2020 15:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45191 * 109.47335 * 2 1 4 4 C 1.34748 * 117.00513 * 180.02562 * 3 2 1 5 5 O 1.21509 * 119.99423 * 0.02562 * 4 3 2 6 6 C 1.47435 * 120.00487 * 180.02562 * 4 3 2 7 7 C 1.40189 * 120.87624 * 353.73190 * 6 4 3 8 8 N 1.31934 * 119.00097 * 179.72842 * 7 6 4 9 9 C 1.32661 * 120.90411 * 359.97438 * 8 7 6 10 10 N 1.38176 * 119.02918 * 180.02562 * 9 8 7 11 11 C 1.38513 * 120.00110 * 357.01762 * 10 9 8 12 12 C 1.38922 * 120.00048 * 301.15714 * 11 10 9 13 13 H 1.08000 * 119.99969 * 155.95096 * 12 11 10 14 14 C 1.40878 * 119.99666 * 335.94657 * 12 11 10 15 15 N 1.30311 * 120.00119 * 348.64526 * 14 12 11 16 16 Si 1.86798 * 119.99950 * 168.65079 * 14 12 11 17 17 H 1.48510 * 109.46909 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47570 * 119.99719 * 16 14 12 19 19 H 1.48505 * 109.47161 * 240.00113 * 16 14 12 20 20 C 1.41114 * 120.00154 * 121.15099 * 11 10 9 21 21 C 1.43193 * 120.00185 * 184.69234 * 20 11 10 22 22 N 9.38021 * 129.44655 * 184.25606 * 3 1 2 23 23 C 1.43206 * 119.99534 * 4.68924 * 20 11 10 24 24 N 8.82255 * 147.58891 * 217.55109 * 3 1 2 25 25 N 1.32632 * 121.93880 * 0.02663 * 9 8 7 26 26 C 1.31961 * 120.90950 * 359.95031 * 25 9 8 27 27 C 1.50706 * 120.50114 * 180.02562 * 26 25 9 28 28 H 1.09000 * 109.47271 * 300.00110 * 1 2 3 29 29 H 1.09000 * 109.47248 * 59.99770 * 1 2 3 30 30 H 1.09000 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46762 * 240.00338 * 2 1 3 32 32 H 1.09000 * 109.47248 * 120.00230 * 2 1 3 33 33 H 1.08000 * 120.49734 * 359.74679 * 7 6 4 34 34 H 0.97000 * 119.99841 * 177.02517 * 10 9 8 35 35 H 0.97003 * 119.99899 * 185.04990 * 15 14 12 36 36 H 1.09004 * 109.47044 * 263.38888 * 27 26 25 37 37 H 1.08997 * 109.46686 * 23.38582 * 27 26 25 38 38 H 1.08992 * 109.46741 * 143.38387 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5455 -0.0005 5 8 4.0900 0.5818 -0.0015 6 6 3.9134 2.9079 0.0000 7 6 3.0831 4.0299 -0.1303 8 7 3.6263 5.2322 -0.1197 9 6 4.9373 5.3865 0.0123 10 7 5.4648 6.6636 0.0189 11 6 4.6357 7.7564 -0.1729 12 6 3.8871 7.8643 -1.3382 13 1 2.9849 8.4579 -1.3474 14 6 4.3048 7.1993 -2.5078 15 7 5.4939 6.6696 -2.5668 16 14 3.1541 7.0769 -3.9742 17 1 1.8715 7.7541 -3.6548 18 1 3.7803 7.7313 -5.1509 19 1 2.8951 5.6474 -4.2822 20 6 4.5514 8.7602 0.8153 21 6 3.6207 9.8379 0.6636 22 7 2.8824 10.6933 0.5376 23 6 5.3965 8.7011 1.9698 24 7 6.0666 8.6564 2.8821 25 7 5.7565 4.3510 0.1381 26 6 5.2925 3.1157 0.1376 27 6 6.2316 1.9458 0.2817 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0150 3.9119 -0.2375 34 1 6.4158 6.7947 0.1578 35 1 5.8091 6.2763 -3.3956 36 1 6.4728 1.5498 -0.7048 37 1 7.1466 2.2732 0.7754 38 1 5.7547 1.1686 0.8787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158213387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:29 Heat of formation + Delta-G solvation = 24.283174 kcal Electronic energy + Delta-G solvation = -26735.693122 eV Core-core repulsion = 22771.831051 eV Total energy + Delta-G solvation = -3963.862071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05047 -39.92301 -37.63269 -36.59920 -35.37838 -34.78886 -33.98185 -33.87583 -32.25429 -31.63314 -29.73559 -28.51698 -27.20126 -24.67044 -23.40511 -22.88927 -21.60242 -20.98365 -19.09032 -18.42306 -17.56319 -17.39707 -16.69947 -16.61261 -16.33058 -16.23411 -15.22337 -14.94906 -14.10569 -14.05691 -13.79296 -13.76385 -13.09972 -12.96564 -12.86906 -12.81202 -12.63457 -12.36943 -12.29181 -12.02799 -11.88286 -11.79701 -11.76610 -11.64609 -11.58139 -11.31100 -11.09542 -10.97992 -10.83292 -10.61959 -10.39288 -10.19278 -10.06821 -9.97439 -8.80329 -8.53389 -7.93472 -7.34845 -5.46344 0.83400 1.50386 2.04406 2.62711 2.65825 2.70709 2.75544 2.82092 3.27969 3.36047 3.82708 4.02778 4.12304 4.21595 4.29342 4.38967 4.67829 4.74368 4.75458 4.86918 4.99387 5.08304 5.13676 5.21160 5.52253 5.55178 5.58143 5.71425 5.75240 5.78813 5.94018 6.11040 6.14141 6.25216 6.37732 6.54578 6.95235 7.07583 7.31746 7.49484 7.63902 7.82546 7.91979 8.07629 8.73055 8.90602 9.08790 9.11908 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.004151 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.992371 B = 6744.373467 C = 7432.840142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.357 6.357 4 C 0.532 3.468 5 O -0.517 6.517 6 C -0.329 4.329 7 C 0.252 3.748 8 N -0.548 5.548 9 C 0.626 3.374 10 N -0.596 5.596 11 C 0.380 3.620 12 C -0.344 4.344 13 H 0.116 0.884 14 C 0.073 3.927 15 N -0.729 5.729 16 Si 0.925 3.075 17 H -0.244 1.244 18 H -0.263 1.263 19 H -0.263 1.263 20 C -0.307 4.307 21 C 0.327 3.673 22 N -0.530 5.530 23 C 0.307 3.693 24 N -0.530 5.530 25 N -0.574 5.574 26 C 0.285 3.715 27 C -0.109 4.109 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.175 0.825 34 H 0.417 0.583 35 H 0.303 0.697 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 -15.680 -4.546 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.379 3.621 5 O -0.408 6.408 6 C -0.340 4.340 7 C 0.079 3.921 8 N -0.269 5.269 9 C 0.272 3.728 10 N -0.219 5.219 11 C 0.277 3.723 12 C -0.371 4.371 13 H 0.134 0.866 14 C -0.158 4.158 15 N -0.348 5.348 16 Si 0.746 3.254 17 H -0.167 1.167 18 H -0.187 1.187 19 H -0.187 1.187 20 C -0.325 4.325 21 C 0.019 3.981 22 N -0.212 5.212 23 C -0.001 4.001 24 N -0.212 5.212 25 N -0.297 5.297 26 C 0.134 3.866 27 C -0.166 4.166 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.192 0.808 34 H 0.256 0.744 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.112 -13.731 -3.452 14.743 hybrid contribution -0.220 -1.365 -1.071 1.749 sum -4.332 -15.096 -4.522 16.343 Atomic orbital electron populations 1.21811 0.92728 1.02810 1.03696 1.22971 0.95199 0.80248 1.02478 1.86544 1.24119 1.32126 1.84634 1.20555 0.80196 0.89158 0.72231 1.90762 1.59795 1.42646 1.47581 1.20147 0.96031 0.92306 1.25493 1.23345 1.00233 0.85483 0.83057 1.68208 1.11541 1.25306 1.21820 1.19107 0.84879 0.85816 0.83016 1.41032 1.10901 1.00435 1.69546 1.16627 0.84038 0.82014 0.89656 1.20226 1.07291 1.18131 0.91476 0.86591 1.26566 0.95845 0.90958 1.02447 1.69452 1.16006 1.19429 1.29874 0.85889 0.81181 0.80021 0.78266 1.16672 1.18717 1.18723 1.12751 1.15533 1.04051 1.00172 1.24595 0.90957 0.90866 0.91683 1.81105 1.15542 1.13588 1.11004 1.25079 0.91554 0.92028 0.91413 1.80943 1.15829 1.11273 1.13178 1.67816 1.38702 0.98161 1.25046 1.21454 0.90323 0.92103 0.82714 1.21038 0.97816 0.93751 1.03989 0.91369 0.91400 0.90407 0.91333 0.91307 0.80810 0.74357 0.88512 0.89475 0.90621 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.34 9.58 -40.62 -0.39 -4.73 16 4 C 0.53 7.48 7.84 34.48 0.27 7.75 16 5 O -0.52 -7.72 13.32 -19.27 -0.26 -7.97 16 6 C -0.33 -5.04 5.91 -104.70 -0.62 -5.65 16 7 C 0.25 3.92 10.89 -16.78 -0.18 3.74 16 8 N -0.55 -10.15 8.68 -13.59 -0.12 -10.27 16 9 C 0.63 12.03 7.09 -322.75 -2.29 9.75 16 10 N -0.60 -11.73 3.35 -11.41 -0.04 -11.77 16 11 C 0.38 7.86 5.43 -83.50 -0.45 7.41 16 12 C -0.34 -6.97 7.59 -38.33 -0.29 -7.26 16 13 H 0.12 2.39 7.08 -52.49 -0.37 2.02 16 14 C 0.07 1.36 4.88 -17.20 -0.08 1.28 16 15 N -0.73 -13.86 11.36 55.60 0.63 -13.23 16 16 Si 0.93 14.84 29.58 -169.99 -5.03 9.81 16 17 H -0.24 -3.97 7.11 56.52 0.40 -3.57 16 18 H -0.26 -4.14 7.11 56.52 0.40 -3.74 16 19 H -0.26 -4.23 7.11 56.52 0.40 -3.83 16 20 C -0.31 -6.66 5.88 -104.96 -0.62 -7.28 16 21 C 0.33 7.40 13.94 -22.44 -0.31 7.09 16 22 N -0.53 -12.44 18.54 41.87 0.78 -11.67 16 23 C 0.31 6.89 14.78 -22.58 -0.33 6.56 16 24 N -0.53 -12.40 18.52 41.71 0.77 -11.62 16 25 N -0.57 -10.42 10.37 -9.83 -0.10 -10.52 16 26 C 0.29 4.59 6.87 -81.82 -0.56 4.03 16 27 C -0.11 -1.44 8.97 36.01 0.32 -1.12 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.17 2.17 7.72 -52.49 -0.41 1.76 16 34 H 0.42 8.01 8.89 -40.82 -0.36 7.64 16 35 H 0.30 5.28 8.29 -40.82 -0.34 4.95 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.30 5.97 -51.93 -0.31 0.99 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -25.86 356.12 -6.47 -32.32 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -3.54 Total: 7.80 kcal Atomic # 6 Polarization: 31.01 SS G_CDS: -4.54 Total: 26.47 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: 1.92 Total: -69.08 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.65 Total: -12.70 kcal Atomic # 14 Polarization: 14.84 SS G_CDS: -5.03 Total: 9.81 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -25.86 -6.47 -32.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.605 kcal (2) G-P(sol) polarization free energy of solvation -25.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds