Wall clock time and date at job start Tue Mar 31 2020 15:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45191 * 109.47335 * 2 1 4 4 C 1.34748 * 117.00513 * 180.02562 * 3 2 1 5 5 O 1.21509 * 119.99423 * 0.02562 * 4 3 2 6 6 C 1.47435 * 120.00487 * 180.02562 * 4 3 2 7 7 C 1.40189 * 120.87624 * 353.73190 * 6 4 3 8 8 N 1.31934 * 119.00097 * 179.72842 * 7 6 4 9 9 C 1.32661 * 120.90411 * 359.97438 * 8 7 6 10 10 N 1.38176 * 119.02918 * 180.02562 * 9 8 7 11 11 C 1.38513 * 120.00110 * 357.01762 * 10 9 8 12 12 C 1.38922 * 120.00048 * 301.15714 * 11 10 9 13 13 H 1.08000 * 119.99969 * 155.95096 * 12 11 10 14 14 C 1.40878 * 119.99666 * 335.94657 * 12 11 10 15 15 N 1.30311 * 120.00119 * 348.64526 * 14 12 11 16 16 Si 1.86798 * 119.99950 * 168.65079 * 14 12 11 17 17 H 1.48510 * 109.46909 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47570 * 119.99719 * 16 14 12 19 19 H 1.48505 * 109.47161 * 240.00113 * 16 14 12 20 20 C 1.41114 * 120.00154 * 121.15099 * 11 10 9 21 21 C 1.43193 * 120.00185 * 184.69234 * 20 11 10 22 22 N 9.38021 * 129.44655 * 184.25606 * 3 1 2 23 23 C 1.43206 * 119.99534 * 4.68924 * 20 11 10 24 24 N 8.82255 * 147.58891 * 217.55109 * 3 1 2 25 25 N 1.32632 * 121.93880 * 0.02663 * 9 8 7 26 26 C 1.31961 * 120.90950 * 359.95031 * 25 9 8 27 27 C 1.50706 * 120.50114 * 180.02562 * 26 25 9 28 28 H 1.09000 * 109.47271 * 300.00110 * 1 2 3 29 29 H 1.09000 * 109.47248 * 59.99770 * 1 2 3 30 30 H 1.09000 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46762 * 240.00338 * 2 1 3 32 32 H 1.09000 * 109.47248 * 120.00230 * 2 1 3 33 33 H 1.08000 * 120.49734 * 359.74679 * 7 6 4 34 34 H 0.97000 * 119.99841 * 177.02517 * 10 9 8 35 35 H 0.97003 * 119.99899 * 185.04990 * 15 14 12 36 36 H 1.09004 * 109.47044 * 263.38888 * 27 26 25 37 37 H 1.08997 * 109.46686 * 23.38582 * 27 26 25 38 38 H 1.08992 * 109.46741 * 143.38387 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5455 -0.0005 5 8 4.0900 0.5818 -0.0015 6 6 3.9134 2.9079 0.0000 7 6 3.0831 4.0299 -0.1303 8 7 3.6263 5.2322 -0.1197 9 6 4.9373 5.3865 0.0123 10 7 5.4648 6.6636 0.0189 11 6 4.6357 7.7564 -0.1729 12 6 3.8871 7.8643 -1.3382 13 1 2.9849 8.4579 -1.3474 14 6 4.3048 7.1993 -2.5078 15 7 5.4939 6.6696 -2.5668 16 14 3.1541 7.0769 -3.9742 17 1 1.8715 7.7541 -3.6548 18 1 3.7803 7.7313 -5.1509 19 1 2.8951 5.6474 -4.2822 20 6 4.5514 8.7602 0.8153 21 6 3.6207 9.8379 0.6636 22 7 2.8824 10.6933 0.5376 23 6 5.3965 8.7011 1.9698 24 7 6.0666 8.6564 2.8821 25 7 5.7565 4.3510 0.1381 26 6 5.2925 3.1157 0.1376 27 6 6.2316 1.9458 0.2817 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0150 3.9119 -0.2375 34 1 6.4158 6.7947 0.1578 35 1 5.8091 6.2763 -3.3956 36 1 6.4728 1.5498 -0.7048 37 1 7.1466 2.2732 0.7754 38 1 5.7547 1.1686 0.8787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158213387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:28 Heat of formation + Delta-G solvation = 13.325924 kcal Electronic energy + Delta-G solvation = -26736.168264 eV Core-core repulsion = 22771.831051 eV Total energy + Delta-G solvation = -3964.337213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31147 -41.05176 -39.11929 -37.67377 -37.06924 -36.57491 -35.39982 -35.21185 -33.54200 -32.50135 -31.18546 -29.67113 -28.81823 -25.90178 -24.43730 -24.07426 -22.80924 -22.26526 -20.69064 -19.71303 -19.00844 -18.74704 -17.90531 -17.84262 -17.57158 -17.43425 -16.67779 -16.17739 -15.35660 -15.28497 -14.91630 -14.71954 -14.62325 -14.39363 -14.19135 -13.99326 -13.93287 -13.59342 -13.51008 -13.41981 -13.32114 -13.23675 -13.17336 -12.83491 -12.76962 -12.71141 -12.63024 -12.38235 -12.13785 -11.79479 -11.57540 -11.47700 -11.37285 -11.13261 -10.16833 -9.99852 -9.40890 -8.84062 -7.12536 -0.44576 0.22981 0.55513 1.33258 1.43620 1.50874 1.58805 1.65028 1.87477 2.03477 2.06672 2.22472 2.50036 2.60813 2.90236 3.12907 3.41039 3.50999 3.59098 3.75794 3.87329 4.07013 4.10926 4.17008 4.44034 4.54766 4.58134 4.64506 4.71617 4.79608 4.90864 4.99583 5.01016 5.14958 5.28413 5.37746 5.52503 5.57993 5.87782 5.99421 6.12778 6.42489 6.56249 6.75750 7.14180 7.30407 7.38046 7.64952 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.004151 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.992371 B = 6744.373467 C = 7432.840142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 O -0.358 6.358 4 C 0.538 3.462 5 O -0.526 6.526 6 C -0.325 4.325 7 C 0.251 3.749 8 N -0.570 5.570 9 C 0.613 3.387 10 N -0.602 5.602 11 C 0.376 3.624 12 C -0.339 4.339 13 H 0.110 0.890 14 C 0.049 3.951 15 N -0.733 5.733 16 Si 0.976 3.024 17 H -0.248 1.248 18 H -0.254 1.254 19 H -0.259 1.259 20 C -0.321 4.321 21 C 0.332 3.668 22 N -0.552 5.552 23 C 0.314 3.686 24 N -0.554 5.554 25 N -0.587 5.587 26 C 0.273 3.727 27 C -0.101 4.101 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.204 0.796 34 H 0.415 0.585 35 H 0.312 0.688 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 -17.697 -5.929 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.274 6.274 4 C 0.384 3.616 5 O -0.417 6.417 6 C -0.335 4.335 7 C 0.080 3.920 8 N -0.292 5.292 9 C 0.259 3.741 10 N -0.226 5.226 11 C 0.272 3.728 12 C -0.366 4.366 13 H 0.128 0.872 14 C -0.181 4.181 15 N -0.352 5.352 16 Si 0.795 3.205 17 H -0.171 1.171 18 H -0.178 1.178 19 H -0.184 1.184 20 C -0.340 4.340 21 C 0.025 3.975 22 N -0.236 5.236 23 C 0.008 3.992 24 N -0.238 5.238 25 N -0.311 5.311 26 C 0.123 3.877 27 C -0.158 4.158 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.220 0.780 34 H 0.254 0.746 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.193 -15.795 -4.822 17.312 hybrid contribution 0.077 -0.949 -0.723 1.195 sum -5.116 -16.744 -5.545 18.365 Atomic orbital electron populations 1.21836 0.90652 1.04324 1.03689 1.23307 0.96794 0.78712 1.02845 1.86535 1.22715 1.34122 1.84061 1.20285 0.80902 0.88359 0.72075 1.90758 1.60275 1.42732 1.47963 1.20312 0.95870 0.93177 1.24145 1.23829 1.01514 0.84697 0.81970 1.68213 1.11357 1.26761 1.22838 1.19210 0.85392 0.85788 0.83700 1.40921 1.10609 1.00527 1.70538 1.16600 0.84525 0.82200 0.89478 1.20378 1.06707 1.17619 0.91910 0.87169 1.27111 0.96784 0.90488 1.03715 1.69452 1.16587 1.18290 1.30829 0.85147 0.79424 0.80002 0.75927 1.17080 1.17839 1.18367 1.12797 1.15986 1.04626 1.00615 1.24734 0.90779 0.90744 0.91227 1.81087 1.16448 1.14268 1.11748 1.25186 0.91282 0.91460 0.91265 1.80925 1.16795 1.12133 1.13900 1.67831 1.38969 0.98687 1.25648 1.21965 0.91419 0.92110 0.82230 1.21053 0.97516 0.92640 1.04587 0.91419 0.91337 0.88131 0.90980 0.90992 0.77985 0.74614 0.87523 0.88529 0.89940 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 71.98 0.74 -0.84 16 2 C 0.06 0.91 6.19 71.98 0.45 1.35 16 3 O -0.36 -7.86 9.58 -56.59 -0.54 -8.40 16 4 C 0.54 14.04 7.84 70.25 0.55 14.59 16 5 O -0.53 -14.63 13.32 19.81 0.26 -14.37 16 6 C -0.32 -9.45 5.91 -19.92 -0.12 -9.56 16 7 C 0.25 7.44 10.89 85.15 0.93 8.36 16 8 N -0.57 -20.69 8.68 -196.91 -1.71 -22.40 16 9 C 0.61 23.42 7.09 261.47 1.85 25.27 16 10 N -0.60 -23.85 3.35 -190.02 -0.64 -24.49 16 11 C 0.38 15.63 5.43 38.96 0.21 15.84 16 12 C -0.34 -13.61 7.59 23.08 0.18 -13.43 16 13 H 0.11 4.52 7.08 -2.91 -0.02 4.50 16 14 C 0.05 1.79 4.88 85.56 0.42 2.21 16 15 N -0.73 -27.03 11.36 21.99 0.25 -26.78 16 16 Si 0.98 28.69 29.58 68.60 2.03 30.72 16 17 H -0.25 -7.43 7.11 99.48 0.71 -6.72 16 18 H -0.25 -7.15 7.11 99.48 0.71 -6.45 16 19 H -0.26 -7.48 7.11 99.48 0.71 -6.77 16 20 C -0.32 -14.15 5.88 -20.08 -0.12 -14.27 16 21 C 0.33 15.19 13.94 88.32 1.23 16.42 16 22 N -0.55 -26.09 18.54 19.01 0.35 -25.74 16 23 C 0.31 14.36 14.78 88.37 1.31 15.67 16 24 N -0.55 -26.32 18.52 18.97 0.35 -25.97 16 25 N -0.59 -21.07 10.37 -185.02 -1.92 -22.99 16 26 C 0.27 8.48 6.87 43.00 0.30 8.78 16 27 C -0.10 -2.52 8.97 71.24 0.64 -1.88 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.20 4.58 7.72 -2.91 -0.02 4.56 16 34 H 0.42 16.25 8.89 -92.71 -0.82 15.43 16 35 H 0.31 10.39 8.29 -92.71 -0.77 9.62 16 36 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.10 2.51 5.97 -2.39 -0.01 2.50 16 Total: -1.00 -54.19 356.12 7.33 -46.86 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.33 Total: 25.05 kcal Atomic # 6 Polarization: 59.94 SS G_CDS: 8.56 Total: 68.50 kcal Atomic # 7 Polarization: -145.05 SS G_CDS: -3.31 Total: -148.36 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.28 Total: -22.77 kcal Atomic # 14 Polarization: 28.69 SS G_CDS: 2.03 Total: 30.72 kcal Total: -54.19 7.33 -46.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.184 kcal (2) G-P(sol) polarization free energy of solvation -54.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds