Wall clock time and date at job start Tue Mar 31 2020 15:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41597 * 114.00148 * 2 1 4 4 C 1.46505 * 119.99832 * 265.61055 * 3 2 1 5 5 C 1.34775 * 120.00458 * 85.60131 * 3 2 1 6 6 O 1.21597 * 120.00417 * 185.19681 * 5 3 2 7 7 C 1.47469 * 119.99670 * 5.20193 * 5 3 2 8 8 C 1.39970 * 120.60681 * 35.89771 * 7 5 3 9 9 C 1.38340 * 118.36472 * 180.26366 * 8 7 5 10 10 C 1.38395 * 119.49643 * 359.48447 * 9 8 7 11 11 N 1.31842 * 121.21049 * 0.26177 * 10 9 8 12 12 C 1.32404 * 121.78235 * 359.97438 * 11 10 9 13 13 N 1.38478 * 119.82207 * 180.02562 * 12 11 10 14 14 C 1.38454 * 119.99976 * 354.72781 * 13 12 11 15 15 C 1.38939 * 119.99736 * 301.58295 * 14 13 12 16 16 H 1.07999 * 119.99536 * 151.92567 * 15 14 13 17 17 C 1.40863 * 120.00236 * 331.93561 * 15 14 13 18 18 N 1.30317 * 120.00015 * 2.89689 * 17 15 14 19 19 Si 1.86805 * 119.99913 * 182.90082 * 17 15 14 20 20 H 1.48501 * 109.47293 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47117 * 119.99621 * 19 17 15 22 22 H 1.48493 * 109.47320 * 239.99817 * 19 17 15 23 23 C 1.41129 * 120.00155 * 121.59034 * 14 13 12 24 24 C 1.43199 * 119.99857 * 185.05544 * 23 14 13 25 25 N 9.54854 * 81.84891 * 48.31528 * 2 1 3 26 26 C 1.43204 * 119.99883 * 5.05780 * 23 14 13 27 27 N 7.50711 * 104.94552 * 34.22624 * 2 1 3 28 28 H 1.09003 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47378 * 300.00104 * 1 2 3 30 30 H 1.08999 * 109.46846 * 60.00394 * 1 2 3 31 31 H 1.09002 * 109.46645 * 269.99832 * 4 3 2 32 32 H 1.08997 * 109.47100 * 29.99127 * 4 3 2 33 33 H 1.08999 * 109.47444 * 149.99622 * 4 3 2 34 34 H 1.08002 * 120.81758 * 0.02562 * 8 7 5 35 35 H 1.07999 * 120.25162 * 179.77111 * 9 8 7 36 36 H 1.08001 * 119.39445 * 180.22786 * 10 9 8 37 37 H 0.96999 * 119.99932 * 174.72711 * 13 12 11 38 38 H 0.97004 * 119.99786 * 185.00719 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3916 1.9232 -1.2651 5 6 2.1973 1.9456 1.1637 6 8 2.6034 3.0918 1.1585 7 6 1.9155 1.2690 2.4433 8 6 2.1763 -0.0972 2.5996 9 6 1.8890 -0.6860 3.8181 10 6 1.3674 0.0858 4.8417 11 7 1.1338 1.3727 4.6761 12 6 1.3858 1.9853 3.5296 13 7 1.1252 3.3392 3.4005 14 6 0.5022 4.0255 4.4290 15 6 -0.7515 3.6236 4.8729 16 1 -1.0479 3.8099 5.8946 17 6 -1.6359 2.9729 3.9904 18 7 -1.2575 2.6974 2.7742 19 14 -3.3512 2.5051 4.5635 20 1 -3.5328 2.9249 5.9764 21 1 -4.3602 3.1841 3.7114 22 1 -3.5241 1.0340 4.4587 23 6 1.1406 5.1333 5.0264 24 6 0.5471 5.7760 6.1601 25 7 0.0752 6.2859 7.0590 26 6 2.3819 5.6147 4.4989 27 7 3.3651 5.9971 4.0796 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.4236 1.6625 -1.5001 32 1 1.7372 1.5697 -2.0618 33 1 2.3019 3.0057 -1.1746 34 1 2.5880 -0.6784 1.7877 35 1 2.0747 -1.7389 3.9709 36 1 1.1473 -0.3748 5.7935 37 1 1.3792 3.8068 2.5894 38 1 -1.8890 2.3157 2.1446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158214805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:03 Heat of formation + Delta-G solvation = 84.274673 kcal Electronic energy + Delta-G solvation = -28044.088246 eV Core-core repulsion = 24082.827602 eV Total energy + Delta-G solvation = -3961.260645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.44068 -38.86019 -37.36070 -37.04479 -35.16662 -34.63299 -33.60568 -32.92635 -32.11583 -31.21174 -28.81464 -27.31660 -27.03915 -26.25090 -23.71556 -22.84003 -21.11722 -20.44573 -18.96947 -18.07207 -17.38663 -17.25959 -16.60745 -16.22579 -16.01140 -15.66682 -15.19498 -14.55834 -14.46374 -14.26951 -13.86173 -13.74824 -13.39057 -12.88880 -12.84920 -12.68941 -12.59585 -12.50740 -12.23259 -12.13203 -11.86594 -11.83442 -11.60787 -11.48186 -11.44959 -10.97222 -10.84151 -10.69921 -10.65339 -10.05519 -10.00053 -9.83463 -9.35715 -9.00370 -8.83885 -8.13928 -7.70394 -6.92470 -5.32594 1.27673 1.80952 1.89417 2.33313 2.71356 2.79361 2.89108 2.99008 3.43437 3.82007 3.98219 4.06907 4.15997 4.31747 4.40941 4.47990 4.98984 5.11852 5.21539 5.22164 5.26351 5.29358 5.31940 5.39563 5.54071 5.58546 5.63637 5.67781 5.78760 5.96940 6.27461 6.28883 6.35651 6.47480 6.52839 6.89462 7.16884 7.36572 7.46243 7.69773 7.85171 8.08208 8.20204 8.36063 8.86613 9.06064 9.20791 9.27879 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.006001 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.719973 B = 4664.609093 C = 5674.546938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.142 6.142 3 N -0.481 5.481 4 C 0.090 3.910 5 C 0.590 3.410 6 O -0.523 6.523 7 C -0.270 4.270 8 C 0.014 3.986 9 C -0.267 4.267 10 C 0.177 3.823 11 N -0.519 5.519 12 C 0.499 3.501 13 N -0.620 5.620 14 C 0.389 3.611 15 C -0.360 4.360 16 H 0.110 0.890 17 C 0.077 3.923 18 N -0.745 5.745 19 Si 0.930 3.070 20 H -0.247 1.247 21 H -0.265 1.265 22 H -0.265 1.265 23 C -0.306 4.306 24 C 0.329 3.671 25 N -0.534 5.534 26 C 0.305 3.695 27 N -0.526 5.526 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.152 0.848 37 H 0.417 0.583 38 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 -14.549 -9.613 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 O -0.146 6.146 3 N -0.261 5.261 4 C -0.051 4.051 5 C 0.383 3.617 6 O -0.400 6.400 7 C -0.281 4.281 8 C -0.012 4.012 9 C -0.291 4.291 10 C 0.014 3.986 11 N -0.235 5.235 12 C 0.260 3.740 13 N -0.244 5.244 14 C 0.285 3.715 15 C -0.388 4.388 16 H 0.128 0.872 17 C -0.151 4.151 18 N -0.365 5.365 19 Si 0.751 3.249 20 H -0.170 1.170 21 H -0.189 1.189 22 H -0.189 1.189 23 C -0.324 4.324 24 C 0.021 3.979 25 N -0.216 5.216 26 C -0.003 4.003 27 N -0.208 5.208 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.169 0.831 37 H 0.260 0.740 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.085 -12.227 -8.372 14.965 hybrid contribution -0.930 -1.143 -1.343 1.994 sum -3.015 -13.370 -9.715 16.800 Atomic orbital electron populations 1.23377 0.81448 1.03454 1.02109 1.90539 1.20378 1.06959 1.96763 1.49769 1.59185 1.10301 1.06814 1.21850 1.00383 0.98986 0.83871 1.18221 0.76018 0.84664 0.82810 1.90790 1.46819 1.16486 1.85857 1.19712 1.18580 0.95538 0.94241 1.21426 0.91221 0.91765 0.96768 1.21619 1.10860 1.01270 0.95303 1.22645 0.89452 0.88490 0.98019 1.67489 1.22484 1.11137 1.22360 1.17746 0.84839 0.84491 0.86892 1.41811 1.58063 1.04951 1.19582 1.16825 0.87835 0.85794 0.81040 1.20140 0.95163 1.23844 0.99654 0.87178 1.26502 1.03190 0.91100 0.94354 1.69550 1.37605 1.24751 1.04587 0.85843 0.78289 0.79264 0.81481 1.17022 1.18948 1.18931 1.12952 0.99006 1.11426 1.09015 1.24614 0.91446 0.90914 0.90915 1.81044 1.11801 1.13707 1.15040 1.25150 0.91355 0.91768 0.91980 1.81022 1.13810 1.12730 1.13188 0.88004 0.91648 0.93218 0.91892 0.90831 0.89273 0.84764 0.85521 0.83079 0.73986 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.06 11.31 101.05 1.14 1.08 16 2 O -0.14 -1.75 8.70 -11.47 -0.10 -1.85 16 3 N -0.48 -6.79 3.38 -68.16 -0.23 -7.02 16 4 C 0.09 1.00 10.86 59.85 0.65 1.65 16 5 C 0.59 10.42 7.13 -12.50 -0.09 10.33 16 6 O -0.52 -10.77 14.19 5.28 0.07 -10.69 16 7 C -0.27 -4.75 5.36 -104.64 -0.56 -5.32 16 8 C 0.01 0.21 8.77 -38.90 -0.34 -0.13 16 9 C -0.27 -3.52 10.09 -39.49 -0.40 -3.92 16 10 C 0.18 2.66 11.17 -17.49 -0.20 2.47 16 11 N -0.52 -9.93 8.91 -12.16 -0.11 -10.04 16 12 C 0.50 9.91 5.90 -155.01 -0.91 9.00 16 13 N -0.62 -13.40 3.21 -9.55 -0.03 -13.43 16 14 C 0.39 8.76 5.47 -83.52 -0.46 8.31 16 15 C -0.36 -7.74 7.55 -38.33 -0.29 -8.03 16 16 H 0.11 2.42 7.15 -52.49 -0.38 2.04 16 17 C 0.08 1.49 5.30 -17.20 -0.09 1.40 16 18 N -0.74 -14.23 10.88 55.60 0.61 -13.63 16 19 Si 0.93 15.17 29.57 -169.99 -5.03 10.14 16 20 H -0.25 -4.20 7.11 56.52 0.40 -3.80 16 21 H -0.26 -4.27 7.11 56.52 0.40 -3.87 16 22 H -0.26 -4.21 7.11 56.52 0.40 -3.81 16 23 C -0.31 -7.22 5.88 -104.95 -0.62 -7.84 16 24 C 0.33 7.91 13.98 -22.47 -0.31 7.59 16 25 N -0.53 -13.13 18.54 41.84 0.78 -12.35 16 26 C 0.31 7.52 14.78 -22.50 -0.33 7.19 16 27 N -0.53 -13.43 18.53 41.81 0.77 -12.65 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.85 7.96 -51.93 -0.41 0.44 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.08 7.36 -51.93 -0.38 0.70 16 34 H 0.13 1.70 6.79 -52.49 -0.36 1.35 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.42 9.40 6.02 -40.82 -0.25 9.16 16 38 H 0.29 5.03 8.29 -40.82 -0.34 4.70 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -28.29 353.03 -4.20 -32.48 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -3.44 Total: 9.94 kcal Atomic # 6 Polarization: 26.59 SS G_CDS: -2.81 Total: 23.78 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: 1.79 Total: -69.12 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.02 Total: -12.54 kcal Atomic # 14 Polarization: 15.17 SS G_CDS: -5.03 Total: 10.14 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.29 -4.20 -32.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.759 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds