Wall clock time and date at job start Tue Mar 31 2020 15:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41597 * 114.00148 * 2 1 4 4 C 1.46505 * 119.99832 * 265.61055 * 3 2 1 5 5 C 1.34775 * 120.00458 * 85.60131 * 3 2 1 6 6 O 1.21597 * 120.00417 * 185.19681 * 5 3 2 7 7 C 1.47469 * 119.99670 * 5.20193 * 5 3 2 8 8 C 1.39970 * 120.60681 * 35.89771 * 7 5 3 9 9 C 1.38340 * 118.36472 * 180.26366 * 8 7 5 10 10 C 1.38395 * 119.49643 * 359.48447 * 9 8 7 11 11 N 1.31842 * 121.21049 * 0.26177 * 10 9 8 12 12 C 1.32404 * 121.78235 * 359.97438 * 11 10 9 13 13 N 1.38478 * 119.82207 * 180.02562 * 12 11 10 14 14 C 1.38454 * 119.99976 * 354.72781 * 13 12 11 15 15 C 1.38939 * 119.99736 * 301.58295 * 14 13 12 16 16 H 1.07999 * 119.99536 * 151.92567 * 15 14 13 17 17 C 1.40863 * 120.00236 * 331.93561 * 15 14 13 18 18 N 1.30317 * 120.00015 * 2.89689 * 17 15 14 19 19 Si 1.86805 * 119.99913 * 182.90082 * 17 15 14 20 20 H 1.48501 * 109.47293 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47117 * 119.99621 * 19 17 15 22 22 H 1.48493 * 109.47320 * 239.99817 * 19 17 15 23 23 C 1.41129 * 120.00155 * 121.59034 * 14 13 12 24 24 C 1.43199 * 119.99857 * 185.05544 * 23 14 13 25 25 N 9.54854 * 81.84891 * 48.31528 * 2 1 3 26 26 C 1.43204 * 119.99883 * 5.05780 * 23 14 13 27 27 N 7.50711 * 104.94552 * 34.22624 * 2 1 3 28 28 H 1.09003 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47378 * 300.00104 * 1 2 3 30 30 H 1.08999 * 109.46846 * 60.00394 * 1 2 3 31 31 H 1.09002 * 109.46645 * 269.99832 * 4 3 2 32 32 H 1.08997 * 109.47100 * 29.99127 * 4 3 2 33 33 H 1.08999 * 109.47444 * 149.99622 * 4 3 2 34 34 H 1.08002 * 120.81758 * 0.02562 * 8 7 5 35 35 H 1.07999 * 120.25162 * 179.77111 * 9 8 7 36 36 H 1.08001 * 119.39445 * 180.22786 * 10 9 8 37 37 H 0.96999 * 119.99932 * 174.72711 * 13 12 11 38 38 H 0.97004 * 119.99786 * 185.00719 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3916 1.9232 -1.2651 5 6 2.1973 1.9456 1.1637 6 8 2.6034 3.0918 1.1585 7 6 1.9155 1.2690 2.4433 8 6 2.1763 -0.0972 2.5996 9 6 1.8890 -0.6860 3.8181 10 6 1.3674 0.0858 4.8417 11 7 1.1338 1.3727 4.6761 12 6 1.3858 1.9853 3.5296 13 7 1.1252 3.3392 3.4005 14 6 0.5022 4.0255 4.4290 15 6 -0.7515 3.6236 4.8729 16 1 -1.0479 3.8099 5.8946 17 6 -1.6359 2.9729 3.9904 18 7 -1.2575 2.6974 2.7742 19 14 -3.3512 2.5051 4.5635 20 1 -3.5328 2.9249 5.9764 21 1 -4.3602 3.1841 3.7114 22 1 -3.5241 1.0340 4.4587 23 6 1.1406 5.1333 5.0264 24 6 0.5471 5.7760 6.1601 25 7 0.0752 6.2859 7.0590 26 6 2.3819 5.6147 4.4989 27 7 3.3651 5.9971 4.0796 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.4236 1.6625 -1.5001 32 1 1.7372 1.5697 -2.0618 33 1 2.3019 3.0057 -1.1746 34 1 2.5880 -0.6784 1.7877 35 1 2.0747 -1.7389 3.9709 36 1 1.1473 -0.3748 5.7935 37 1 1.3792 3.8068 2.5894 38 1 -1.8890 2.3157 2.1446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:02 Heat of formation + Delta-G solvation = 68.177434 kcal Electronic energy + Delta-G solvation = -28044.786275 eV Core-core repulsion = 24082.827602 eV Total energy + Delta-G solvation = -3961.958674 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72893 -40.11969 -38.77240 -38.33137 -36.96429 -36.54726 -35.12048 -34.02062 -33.36011 -32.74875 -30.19769 -28.77162 -28.26906 -27.27328 -24.93896 -24.19463 -22.65762 -21.62776 -20.65579 -19.24206 -18.94870 -18.73008 -17.78607 -17.75498 -17.27904 -16.90498 -16.38319 -15.88077 -15.69358 -15.26608 -15.16383 -15.01674 -14.74246 -14.54986 -14.36167 -14.01373 -13.90426 -13.84385 -13.56107 -13.43136 -13.42189 -13.33703 -13.23089 -13.01855 -12.78014 -12.70923 -12.66071 -12.07858 -11.73508 -11.50050 -11.41379 -11.06158 -10.64423 -10.18329 -10.05240 -9.73657 -9.18800 -8.39995 -7.08023 0.02177 0.43395 0.85544 0.95458 1.36228 1.50562 1.54077 1.71940 2.04494 2.09632 2.20806 2.27645 2.59233 2.74170 2.97237 3.16799 3.42458 3.74753 3.92476 4.06816 4.12593 4.32522 4.38709 4.41704 4.47177 4.50373 4.55808 4.66263 4.71164 4.79583 4.82406 4.86388 5.16282 5.27521 5.37891 5.44656 5.63611 5.90321 6.05529 6.23434 6.34588 6.57721 6.78302 6.96138 7.17810 7.31450 7.49667 7.77620 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.006001 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.719973 B = 4664.609093 C = 5674.546938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.138 6.138 3 N -0.477 5.477 4 C 0.085 3.915 5 C 0.583 3.417 6 O -0.566 6.566 7 C -0.282 4.282 8 C 0.016 3.984 9 C -0.242 4.242 10 C 0.164 3.836 11 N -0.552 5.552 12 C 0.473 3.527 13 N -0.631 5.631 14 C 0.378 3.622 15 C -0.353 4.353 16 H 0.101 0.899 17 C 0.049 3.951 18 N -0.739 5.739 19 Si 0.988 3.012 20 H -0.260 1.260 21 H -0.257 1.257 22 H -0.250 1.250 23 C -0.330 4.330 24 C 0.334 3.666 25 N -0.553 5.553 26 C 0.311 3.689 27 N -0.556 5.556 28 H 0.135 0.865 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.407 0.593 38 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.297 -18.346 -10.744 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 O -0.142 6.142 3 N -0.255 5.255 4 C -0.054 4.054 5 C 0.376 3.624 6 O -0.446 6.446 7 C -0.293 4.293 8 C -0.010 4.010 9 C -0.264 4.264 10 C 0.003 3.997 11 N -0.269 5.269 12 C 0.237 3.763 13 N -0.255 5.255 14 C 0.273 3.727 15 C -0.380 4.380 16 H 0.119 0.881 17 C -0.179 4.179 18 N -0.359 5.359 19 Si 0.807 3.193 20 H -0.183 1.183 21 H -0.181 1.181 22 H -0.174 1.174 23 C -0.350 4.350 24 C 0.027 3.973 25 N -0.237 5.237 26 C 0.005 3.995 27 N -0.239 5.239 28 H 0.153 0.847 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.174 0.826 35 H 0.188 0.812 36 H 0.200 0.800 37 H 0.249 0.751 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.583 -16.101 -9.544 19.057 hybrid contribution -0.545 -0.253 -1.109 1.261 sum -4.128 -16.354 -10.652 19.949 Atomic orbital electron populations 1.23523 0.80186 1.05334 1.01339 1.90526 1.21551 1.05443 1.96727 1.49713 1.58318 1.10761 1.06664 1.22045 1.01971 0.98079 0.83325 1.18341 0.75858 0.84342 0.83890 1.90764 1.48929 1.18263 1.86651 1.19895 1.18766 0.96765 0.93846 1.21729 0.90675 0.90526 0.98084 1.22062 1.07688 1.02993 0.93702 1.23298 0.89017 0.87411 0.99961 1.67443 1.23713 1.13186 1.22519 1.17962 0.86348 0.84015 0.87989 1.41730 1.59069 1.05830 1.18900 1.16880 0.88165 0.85867 0.81766 1.20284 0.94928 1.23269 0.99537 0.88107 1.27134 1.05673 0.90928 0.94198 1.69555 1.38931 1.22524 1.04856 0.85007 0.74370 0.79656 0.80292 1.18310 1.18135 1.17412 1.13085 0.99270 1.12779 1.09820 1.24709 0.91156 0.90591 0.90809 1.81014 1.12538 1.14448 1.15688 1.25366 0.91392 0.91204 0.91508 1.80984 1.14742 1.13901 1.14320 0.84690 0.94240 0.92120 0.90559 0.87792 0.90866 0.82648 0.81173 0.79980 0.75138 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 11.31 113.37 1.28 1.17 16 2 O -0.14 -3.00 8.70 -38.78 -0.34 -3.34 16 3 N -0.48 -12.83 3.38 -487.83 -1.65 -14.48 16 4 C 0.09 1.78 10.86 127.77 1.39 3.17 16 5 C 0.58 20.64 7.13 86.68 0.62 21.26 16 6 O -0.57 -24.31 14.19 -4.02 -0.06 -24.37 16 7 C -0.28 -9.76 5.36 -19.88 -0.11 -9.87 16 8 C 0.02 0.42 8.77 22.71 0.20 0.62 16 9 C -0.24 -5.43 10.09 22.33 0.23 -5.20 16 10 C 0.16 4.51 11.17 84.73 0.95 5.46 16 11 N -0.55 -20.76 8.91 -192.38 -1.71 -22.47 16 12 C 0.47 18.89 5.90 133.57 0.79 19.68 16 13 N -0.63 -28.16 3.21 -184.14 -0.59 -28.75 16 14 C 0.38 17.59 5.47 38.97 0.21 17.81 16 15 C -0.35 -15.33 7.55 23.08 0.17 -15.16 16 16 H 0.10 4.51 7.15 -2.91 -0.02 4.49 16 17 C 0.05 1.86 5.30 85.56 0.45 2.31 16 18 N -0.74 -27.62 10.88 21.98 0.24 -27.38 16 19 Si 0.99 29.47 29.57 68.60 2.03 31.50 16 20 H -0.26 -8.26 7.11 99.48 0.71 -7.55 16 21 H -0.26 -7.37 7.11 99.48 0.71 -6.66 16 22 H -0.25 -6.89 7.11 99.48 0.71 -6.18 16 23 C -0.33 -16.31 5.88 -20.08 -0.12 -16.43 16 24 C 0.33 16.63 13.98 88.33 1.24 17.86 16 25 N -0.55 -27.93 18.54 19.00 0.35 -27.58 16 26 C 0.31 16.12 14.78 88.34 1.31 17.43 16 27 N -0.56 -29.77 18.53 19.00 0.35 -29.41 16 28 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 0.94 7.96 -2.39 -0.02 0.92 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.80 7.36 -2.39 -0.02 1.78 16 34 H 0.16 3.37 6.79 -2.91 -0.02 3.35 16 35 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.18 3.67 8.06 -2.91 -0.02 3.64 16 37 H 0.41 19.34 6.02 -92.71 -0.56 18.79 16 38 H 0.31 9.99 8.29 -92.71 -0.77 9.22 16 Total: -1.00 -64.54 353.03 7.82 -56.72 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.59 Total: 29.46 kcal Atomic # 6 Polarization: 51.50 SS G_CDS: 8.60 Total: 60.10 kcal Atomic # 7 Polarization: -147.06 SS G_CDS: -3.01 Total: -150.07 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.39 Total: -27.71 kcal Atomic # 14 Polarization: 29.47 SS G_CDS: 2.03 Total: 31.50 kcal Total: -64.54 7.82 -56.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.898 kcal (2) G-P(sol) polarization free energy of solvation -64.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds