Wall clock time and date at job start Tue Mar 31 2020 14:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 6 6 H 1.07995 * 120.00006 * 240.00415 * 5 3 2 7 7 C 1.37875 * 120.00190 * 59.99565 * 5 3 2 8 8 N 1.31520 * 119.99966 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00189 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47117 * 60.00189 * 9 7 5 11 11 H 1.48504 * 109.46975 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46945 * 299.99859 * 9 7 5 13 13 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 14 14 C 1.38395 * 119.99916 * 274.72125 * 13 3 2 15 15 N 1.32492 * 119.17782 * 0.02562 * 14 13 3 16 16 C 1.32549 * 120.85939 * 179.75883 * 15 14 13 17 17 Cl 1.73596 * 120.38233 * 180.23864 * 16 15 14 18 18 C 1.38440 * 119.23411 * 0.50511 * 16 15 14 19 19 C 1.39302 * 118.49577 * 359.74794 * 18 16 15 20 20 O 1.35514 * 120.45295 * 180.02562 * 19 18 16 21 21 C 1.42903 * 116.99799 * 179.97438 * 20 19 18 22 22 H 1.08993 * 110.45685 * 332.61004 * 21 20 19 23 23 C 1.54504 * 110.51507 * 209.99811 * 21 20 19 24 24 C 1.54475 * 104.06777 * 241.35922 * 23 21 20 25 25 O 1.44421 * 104.80221 * 23.97675 * 24 23 21 26 26 C 1.44424 * 105.27761 * 319.48994 * 25 24 23 27 27 N 1.32448 * 119.18238 * 180.27731 * 14 13 3 28 28 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 29 29 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 30 30 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 0.96995 * 120.00431 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00384 * 95.00578 * 13 3 2 35 35 H 1.08001 * 120.75457 * 179.73491 * 18 16 15 36 36 H 1.09011 * 110.51113 * 0.02562 * 23 21 20 37 37 H 1.09000 * 110.51110 * 122.70976 * 23 21 20 38 38 H 1.08995 * 110.37807 * 142.81198 * 24 23 21 39 39 H 1.09005 * 110.36910 * 265.03463 * 24 23 21 40 40 H 1.09008 * 110.37397 * 281.68451 * 26 25 24 41 41 H 1.08991 * 110.37658 * 159.34418 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1733 9 14 6.0051 0.8799 -1.3811 10 1 6.5968 0.1451 -0.2342 11 1 6.3979 0.2165 -2.6503 12 1 6.5006 2.2798 -1.3808 13 7 1.6525 2.0974 1.2518 14 6 0.4047 2.6846 1.3681 15 7 -0.4266 2.6444 0.3372 16 6 -1.6314 3.1918 0.4137 17 17 -2.7131 3.1265 -0.9425 18 6 -2.0150 3.8211 1.5856 19 6 -1.1158 3.8506 2.6492 20 8 -1.4503 4.4555 3.8148 21 6 -0.4725 4.4416 4.8568 22 1 0.1795 3.5740 4.7559 23 6 -1.1571 4.4463 6.2418 24 6 -0.6644 5.7542 6.8998 25 8 -0.3052 6.6109 5.7940 26 6 0.3530 5.7474 4.8417 27 7 0.0733 3.2771 2.5053 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8293 -0.0606 -2.9502 34 1 2.2720 2.1232 1.9978 35 1 -2.9892 4.2790 1.6732 36 1 -2.2416 4.4587 6.1319 37 1 -0.8418 3.5822 6.8266 38 1 -1.4626 6.2076 7.4874 39 1 0.2044 5.5588 7.5285 40 1 1.3790 5.5512 5.1532 41 1 0.3362 6.1954 3.8483 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:33 Heat of formation + Delta-G solvation = -26.402699 kcal Electronic energy + Delta-G solvation = -25908.881341 eV Core-core repulsion = 22043.928859 eV Total energy + Delta-G solvation = -3864.952482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.02025 -39.79595 -37.88183 -36.78561 -35.96728 -33.11806 -32.71729 -31.80111 -30.95492 -29.90911 -28.90531 -26.85691 -24.36522 -23.50113 -23.07331 -22.47321 -21.43746 -19.90168 -18.64044 -18.14077 -16.87211 -16.53697 -16.32254 -15.68244 -15.54196 -15.33692 -15.14867 -14.92869 -14.42234 -14.27226 -13.84928 -13.64787 -12.98150 -12.79185 -12.68152 -12.35436 -12.08146 -11.81417 -11.70384 -11.33095 -11.30659 -11.21991 -11.17300 -11.03579 -10.87708 -10.57314 -10.36636 -10.22993 -10.08231 -9.72517 -9.67657 -9.32724 -9.10425 -8.89465 -8.50124 -7.39705 -6.19319 -4.29102 1.30189 1.55724 1.76917 2.90485 3.22158 3.27689 3.28166 3.53428 3.69543 4.10705 4.27350 4.29474 4.50135 4.53908 4.76774 4.84416 5.05766 5.12729 5.24931 5.28599 5.36360 5.45263 5.49406 5.51553 5.60849 5.67018 6.04750 6.31134 6.36266 6.47771 6.57558 6.92552 7.00449 7.03493 7.23525 7.28030 7.50183 7.57614 7.61265 7.82782 8.09186 8.34330 8.62396 8.88927 9.37498 10.85832 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.003843 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.083073 B = 7283.552394 C = 9131.383230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.279 3.721 4 H 0.059 0.941 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.657 5.657 14 C 0.620 3.380 15 N -0.561 5.561 16 C 0.293 3.707 17 Cl -0.020 7.020 18 C -0.316 4.316 19 C 0.412 3.588 20 O -0.286 6.286 21 C 0.055 3.945 22 H 0.111 0.889 23 C -0.155 4.155 24 C 0.045 3.955 25 O -0.371 6.371 26 C 0.034 3.966 27 N -0.636 5.636 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.103 0.897 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.406 0.594 35 H 0.149 0.851 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.934 6.290 12.758 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.077 0.923 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.286 5.286 14 C 0.263 3.737 15 N -0.290 5.290 16 C 0.116 3.884 17 Cl 0.008 6.992 18 C -0.345 4.345 19 C 0.222 3.778 20 O -0.190 6.190 21 C -0.002 4.002 22 H 0.129 0.871 23 C -0.193 4.193 24 C -0.032 4.032 25 O -0.290 6.290 26 C -0.043 4.043 27 N -0.378 5.378 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.121 0.879 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.242 0.758 35 H 0.167 0.833 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.248 6.009 12.258 16.489 hybrid contribution 0.514 -0.017 0.181 0.545 sum -8.734 5.992 12.439 16.337 Atomic orbital electron populations 1.21819 0.98393 0.97977 1.00797 1.21956 0.92621 0.99601 1.02431 1.18988 0.94317 0.89184 0.79804 0.92286 1.21149 0.90434 1.39573 1.06550 0.92074 1.24840 0.98673 0.94617 0.95253 1.69871 1.35289 1.37248 1.09262 0.86494 0.84671 0.78375 0.77500 1.20140 1.21058 1.20156 1.45393 1.09429 1.54523 1.19281 1.18784 0.87550 0.85336 0.82041 1.67566 1.03683 1.26504 1.31212 1.21181 0.89415 0.90210 0.87553 1.98405 1.59950 1.96604 1.44217 1.20839 1.04252 1.16460 0.92950 1.19371 0.87606 0.85313 0.85495 1.86329 1.41952 1.70809 1.19944 1.23813 0.90358 1.00506 0.85492 0.87113 1.23134 1.03054 0.99375 0.93689 1.23428 0.99900 0.89725 0.90106 1.89168 1.77717 1.32010 1.30104 1.23867 0.95771 0.89841 0.94831 1.67436 1.19957 1.23030 1.27396 0.95370 0.92378 0.95814 0.87931 0.95093 0.92379 0.75806 0.83348 0.89015 0.89030 0.88685 0.91893 0.90531 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.44 37.16 0.31 -2.45 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.08 16 3 C 0.28 6.62 2.24 -69.08 -0.15 6.46 16 4 H 0.06 1.59 7.49 -51.93 -0.39 1.20 16 5 C -0.54 -13.70 8.73 -34.44 -0.30 -14.00 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -23.66 11.29 55.43 0.63 -23.03 16 9 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.66 -13.43 5.15 -56.94 -0.29 -13.72 16 14 C 0.62 12.05 6.99 -322.88 -2.26 9.80 16 15 N -0.56 -11.02 6.39 -11.09 -0.07 -11.09 16 16 C 0.29 4.96 7.33 -17.17 -0.13 4.83 16 17 Cl -0.02 -0.30 29.15 -51.86 -1.51 -1.81 16 18 C -0.32 -4.81 9.92 -39.11 -0.39 -5.19 16 19 C 0.41 6.49 7.52 -16.74 -0.13 6.36 16 20 O -0.29 -3.97 9.77 -18.23 -0.18 -4.14 16 21 C 0.06 0.64 3.42 -25.16 -0.09 0.55 16 22 H 0.11 1.34 6.99 -51.93 -0.36 0.98 16 23 C -0.15 -1.34 6.90 -25.17 -0.17 -1.51 16 24 C 0.05 0.38 7.63 37.93 0.29 0.67 16 25 O -0.37 -4.47 11.65 -35.23 -0.41 -4.89 16 26 C 0.03 0.39 7.38 37.94 0.28 0.67 16 27 N -0.64 -10.94 8.81 -14.01 -0.12 -11.06 16 28 H 0.03 0.57 5.62 -51.93 -0.29 0.28 16 29 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.41 7.66 8.65 -40.82 -0.35 7.31 16 35 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.09 0.80 8.00 -51.92 -0.42 0.38 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.10 1.25 8.09 -51.93 -0.42 0.83 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -27.47 351.71 -10.09 -37.56 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.44 Total: 6.97 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -2.97 Total: 4.82 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.14 Total: -58.90 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.59 Total: -9.03 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.51 Total: -1.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.47 -10.09 -37.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.158 kcal (2) G-P(sol) polarization free energy of solvation -27.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds