Wall clock time and date at job start Tue Mar 31 2020 14:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 6 6 H 1.07995 * 120.00006 * 240.00415 * 5 3 2 7 7 C 1.37875 * 120.00190 * 59.99565 * 5 3 2 8 8 N 1.31520 * 119.99966 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00189 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47117 * 60.00189 * 9 7 5 11 11 H 1.48504 * 109.46975 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46945 * 299.99859 * 9 7 5 13 13 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 14 14 C 1.38395 * 119.99916 * 274.72125 * 13 3 2 15 15 N 1.32492 * 119.17782 * 0.02562 * 14 13 3 16 16 C 1.32549 * 120.85939 * 179.75883 * 15 14 13 17 17 Cl 1.73596 * 120.38233 * 180.23864 * 16 15 14 18 18 C 1.38440 * 119.23411 * 0.50511 * 16 15 14 19 19 C 1.39302 * 118.49577 * 359.74794 * 18 16 15 20 20 O 1.35514 * 120.45295 * 180.02562 * 19 18 16 21 21 C 1.42903 * 116.99799 * 179.97438 * 20 19 18 22 22 H 1.08993 * 110.45685 * 332.61004 * 21 20 19 23 23 C 1.54504 * 110.51507 * 209.99811 * 21 20 19 24 24 C 1.54475 * 104.06777 * 241.35922 * 23 21 20 25 25 O 1.44421 * 104.80221 * 23.97675 * 24 23 21 26 26 C 1.44424 * 105.27761 * 319.48994 * 25 24 23 27 27 N 1.32448 * 119.18238 * 180.27731 * 14 13 3 28 28 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 29 29 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 30 30 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 0.96995 * 120.00431 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00384 * 95.00578 * 13 3 2 35 35 H 1.08001 * 120.75457 * 179.73491 * 18 16 15 36 36 H 1.09011 * 110.51113 * 0.02562 * 23 21 20 37 37 H 1.09000 * 110.51110 * 122.70976 * 23 21 20 38 38 H 1.08995 * 110.37807 * 142.81198 * 24 23 21 39 39 H 1.09005 * 110.36910 * 265.03463 * 24 23 21 40 40 H 1.09008 * 110.37397 * 281.68451 * 26 25 24 41 41 H 1.08991 * 110.37658 * 159.34418 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1733 9 14 6.0051 0.8799 -1.3811 10 1 6.5968 0.1451 -0.2342 11 1 6.3979 0.2165 -2.6503 12 1 6.5006 2.2798 -1.3808 13 7 1.6525 2.0974 1.2518 14 6 0.4047 2.6846 1.3681 15 7 -0.4266 2.6444 0.3372 16 6 -1.6314 3.1918 0.4137 17 17 -2.7131 3.1265 -0.9425 18 6 -2.0150 3.8211 1.5856 19 6 -1.1158 3.8506 2.6492 20 8 -1.4503 4.4555 3.8148 21 6 -0.4725 4.4416 4.8568 22 1 0.1795 3.5740 4.7559 23 6 -1.1571 4.4463 6.2418 24 6 -0.6644 5.7542 6.8998 25 8 -0.3052 6.6109 5.7940 26 6 0.3530 5.7474 4.8417 27 7 0.0733 3.2771 2.5053 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8293 -0.0606 -2.9502 34 1 2.2720 2.1232 1.9978 35 1 -2.9892 4.2790 1.6732 36 1 -2.2416 4.4587 6.1319 37 1 -0.8418 3.5822 6.8266 38 1 -1.4626 6.2076 7.4874 39 1 0.2044 5.5588 7.5285 40 1 1.3790 5.5512 5.1532 41 1 0.3362 6.1954 3.8483 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:32 Heat of formation + Delta-G solvation = -42.524142 kcal Electronic energy + Delta-G solvation = -25909.580419 eV Core-core repulsion = 22043.928859 eV Total energy + Delta-G solvation = -3865.651560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.30699 -40.81121 -38.98886 -38.15023 -37.46935 -34.77864 -34.14330 -33.06814 -32.33015 -31.28646 -29.79640 -28.66358 -25.59941 -25.20400 -24.21328 -23.75036 -22.39593 -21.58362 -20.01046 -19.45518 -18.34636 -17.71391 -17.35655 -17.06252 -16.83434 -16.68045 -16.46658 -16.15954 -15.73211 -15.62006 -15.34049 -14.78086 -14.55470 -14.30042 -13.73229 -13.60749 -13.29565 -13.16453 -13.14082 -12.87449 -12.67001 -12.58315 -12.42614 -12.27478 -12.21189 -12.06299 -12.04187 -11.68698 -11.51852 -11.17251 -11.01845 -10.89744 -10.58601 -10.40930 -10.26246 -8.92108 -8.15232 -6.31365 -0.03938 0.22148 0.50334 1.45864 1.46483 1.54105 1.76538 2.06572 2.44965 2.74149 2.92718 3.14507 3.25044 3.45253 3.69681 3.73559 4.03686 4.11840 4.17006 4.21267 4.35138 4.46302 4.55791 4.58901 4.63231 4.73556 4.79209 4.82893 4.89678 5.01430 5.10554 5.28757 5.46342 5.58912 5.62587 5.64796 5.77395 5.85461 6.03246 6.09918 6.24100 6.71325 6.75476 7.30118 7.43773 8.89341 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.003843 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.083073 B = 7283.552394 C = 9131.383230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.119 4.119 3 C 0.294 3.706 4 H 0.022 0.978 5 C -0.553 4.553 6 H 0.065 0.935 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.665 5.665 14 C 0.610 3.390 15 N -0.591 5.591 16 C 0.278 3.722 17 Cl -0.004 7.004 18 C -0.300 4.300 19 C 0.408 3.592 20 O -0.284 6.284 21 C 0.046 3.954 22 H 0.106 0.894 23 C -0.147 4.147 24 C 0.041 3.959 25 O -0.395 6.395 26 C 0.035 3.965 27 N -0.631 5.631 28 H 0.030 0.970 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.266 0.734 34 H 0.411 0.589 35 H 0.177 0.823 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.463 6.730 14.661 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.159 4.159 3 C 0.191 3.809 4 H 0.040 0.960 5 C -0.591 4.591 6 H 0.083 0.917 7 C -0.177 4.177 8 N -0.545 5.545 9 Si 0.789 3.211 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.296 5.296 14 C 0.253 3.747 15 N -0.321 5.321 16 C 0.104 3.896 17 Cl 0.025 6.975 18 C -0.328 4.328 19 C 0.219 3.781 20 O -0.188 6.188 21 C -0.010 4.010 22 H 0.124 0.876 23 C -0.184 4.184 24 C -0.035 4.035 25 O -0.314 6.314 26 C -0.042 4.042 27 N -0.372 5.372 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.248 0.752 35 H 0.194 0.806 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.835 6.484 14.200 18.450 hybrid contribution 0.541 -0.046 -0.326 0.633 sum -9.294 6.439 13.874 17.897 Atomic orbital electron populations 1.21620 0.96657 0.98728 1.00233 1.21789 0.94063 0.99013 1.00988 1.18499 0.93277 0.89094 0.80074 0.96050 1.21498 0.91587 1.39323 1.06713 0.91703 1.25612 1.02766 0.94336 0.94999 1.70006 1.36860 1.37994 1.09681 0.85520 0.79716 0.78298 0.77521 1.19286 1.21007 1.19959 1.44977 1.10400 1.55831 1.18423 1.18770 0.87290 0.85877 0.82755 1.67523 1.04878 1.27806 1.31859 1.21466 0.89028 0.90334 0.88731 1.98406 1.59034 1.96517 1.43545 1.21148 1.05060 1.14706 0.91900 1.19583 0.87158 0.84974 0.86375 1.86354 1.42596 1.70191 1.19650 1.24089 0.90479 1.00259 0.86194 0.87631 1.23178 1.02887 1.00543 0.91841 1.23683 1.01306 0.89123 0.89371 1.89142 1.77932 1.33177 1.31170 1.23825 0.96541 0.89595 0.94224 1.67419 1.20694 1.22699 1.26418 0.95104 0.93665 0.94260 0.90599 0.95049 0.92504 0.75175 0.80563 0.88865 0.86759 0.86947 0.90088 0.89226 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.82 8.44 71.98 0.61 -4.22 16 2 C -0.12 -5.62 5.45 30.60 0.17 -5.46 16 3 C 0.29 14.31 2.24 44.24 0.10 14.41 16 4 H 0.02 1.21 7.49 -2.39 -0.02 1.19 16 5 C -0.55 -28.54 8.73 25.60 0.22 -28.32 16 6 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 7 C 0.02 1.25 5.29 84.65 0.45 1.69 16 8 N -0.91 -49.91 11.29 21.45 0.24 -49.67 16 9 Si 0.96 41.39 29.54 68.60 2.03 43.42 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.66 -27.56 5.15 -334.06 -1.72 -29.28 16 14 C 0.61 23.78 6.99 261.51 1.83 25.61 16 15 N -0.59 -23.32 6.39 -189.01 -1.21 -24.53 16 16 C 0.28 9.22 7.33 84.63 0.62 9.84 16 17 Cl 0.00 -0.10 29.15 -2.72 -0.08 -0.18 16 18 C -0.30 -8.62 9.92 22.57 0.22 -8.40 16 19 C 0.41 12.32 7.52 84.80 0.64 12.96 16 20 O -0.28 -7.37 9.77 -88.16 -0.86 -8.24 16 21 C 0.05 0.99 3.42 31.61 0.11 1.10 16 22 H 0.11 2.40 6.99 -2.39 -0.02 2.38 16 23 C -0.15 -2.13 6.90 31.61 0.22 -1.91 16 24 C 0.04 0.58 7.63 72.48 0.55 1.13 16 25 O -0.39 -8.86 11.65 -148.98 -1.74 -10.60 16 26 C 0.04 0.77 7.38 72.49 0.53 1.31 16 27 N -0.63 -21.27 8.81 -310.92 -2.74 -24.01 16 28 H 0.03 1.25 5.62 -2.39 -0.01 1.24 16 29 H 0.04 1.99 7.66 -2.39 -0.02 1.97 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 4.01 5.95 -2.39 -0.01 3.99 16 32 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.41 15.68 8.65 -92.71 -0.80 14.88 16 35 H 0.18 4.00 8.06 -2.91 -0.02 3.98 16 36 H 0.09 1.35 8.00 -2.38 -0.02 1.33 16 37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.08 2.02 8.09 -2.39 -0.02 2.00 16 Total: -1.00 -59.45 351.71 0.46 -58.99 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.27 Total: 24.36 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 6.27 Total: 19.74 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -5.42 Total: -127.49 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -2.60 Total: -18.84 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.08 Total: -0.18 kcal Total: -59.45 0.46 -58.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.461 kcal (2) G-P(sol) polarization free energy of solvation -59.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds