Wall clock time and date at job start Tue Mar 31 2020 14:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47300 * 2 1 4 4 H 1.08998 * 109.47251 * 305.00828 * 3 2 1 5 5 C 1.50699 * 109.47305 * 185.00251 * 3 2 1 6 6 H 1.08000 * 119.99951 * 239.99933 * 5 3 2 7 7 C 1.37881 * 119.99910 * 59.99956 * 5 3 2 8 8 N 1.31516 * 120.00128 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99757 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47293 * 90.00111 * 9 7 5 11 11 H 1.48501 * 109.46985 * 210.00450 * 9 7 5 12 12 H 1.48501 * 109.47247 * 330.00164 * 9 7 5 13 13 N 1.46503 * 109.46709 * 65.00054 * 3 2 1 14 14 C 1.38387 * 120.00454 * 274.99916 * 13 3 2 15 15 N 1.32500 * 119.17633 * 0.02739 * 14 13 3 16 16 C 1.32544 * 120.85570 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 120.37759 * 180.02562 * 16 15 14 18 18 C 1.38444 * 119.23861 * 359.74244 * 16 15 14 19 19 C 1.39293 * 118.49381 * 0.49711 * 18 16 15 20 20 O 1.35522 * 120.45533 * 179.78597 * 19 18 16 21 21 C 1.42898 * 116.99882 * 179.72217 * 20 19 18 22 22 H 1.09002 * 110.75293 * 29.29293 * 21 20 19 23 23 C 1.55305 * 110.84662 * 152.76846 * 21 20 19 24 24 C 1.55503 * 100.69731 * 152.41937 * 23 21 20 25 25 O 1.43649 * 105.17486 * 323.57822 * 24 23 21 26 26 C 1.43232 * 109.97368 * 24.43551 * 25 24 23 27 27 N 1.32451 * 119.18499 * 179.97438 * 14 13 3 28 28 H 1.09009 * 109.46918 * 299.99764 * 1 2 3 29 29 H 1.08998 * 109.47589 * 59.99151 * 1 2 3 30 30 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47014 * 240.00717 * 2 1 3 32 32 H 1.08993 * 109.47683 * 120.00364 * 2 1 3 33 33 H 0.96995 * 119.99779 * 180.02562 * 8 7 5 34 34 H 0.97002 * 119.99341 * 95.00645 * 13 3 2 35 35 H 1.07998 * 120.75122 * 180.27511 * 18 16 15 36 36 H 1.08999 * 111.12419 * 270.43803 * 23 21 20 37 37 H 1.08995 * 111.13053 * 34.60213 * 23 21 20 38 38 H 1.08999 * 110.28337 * 204.65226 * 24 23 21 39 39 H 1.09000 * 110.29205 * 82.50380 * 24 23 21 40 40 H 1.09009 * 109.83173 * 238.77615 * 26 25 24 41 41 H 1.08999 * 109.90937 * 117.84744 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8813 -1.3820 10 1 6.5548 -0.3501 -0.7604 11 1 6.3827 0.9226 -2.8175 12 1 6.5568 2.0739 -0.6903 13 7 1.6524 2.0974 1.2519 14 6 0.4025 2.6796 1.3702 15 7 -0.4310 2.6346 0.3412 16 6 -1.6362 3.1809 0.4183 17 17 -2.7186 3.1142 -0.9373 18 6 -2.0241 3.8000 1.5943 19 6 -1.1227 3.8347 2.6556 20 8 -1.4593 4.4343 3.8235 21 6 -0.4809 4.4215 4.8649 22 1 0.5262 4.4042 4.4484 23 6 -0.6664 5.6379 5.8124 24 6 -0.0833 5.0650 7.1352 25 8 -0.4742 3.6828 7.1509 26 6 -0.7039 3.2241 5.8135 27 7 0.0688 3.2669 2.5096 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8291 -0.0609 -2.9500 34 1 2.2720 2.1231 1.9978 35 1 -3.0020 4.2491 1.6854 36 1 -0.0925 6.4972 5.4656 37 1 -1.7206 5.8915 5.9246 38 1 -0.5071 5.5877 7.9927 39 1 1.0033 5.1509 7.1378 40 1 -1.7276 2.8620 5.7175 41 1 -0.0046 2.4243 5.5701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:36 Heat of formation + Delta-G solvation = -26.307115 kcal Electronic energy + Delta-G solvation = -25911.262558 eV Core-core repulsion = 22046.314221 eV Total energy + Delta-G solvation = -3864.948337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04334 -39.79661 -38.02557 -36.80813 -36.00019 -33.13689 -32.76799 -31.81742 -30.96128 -29.94281 -28.98816 -26.86956 -24.32048 -23.53170 -22.88647 -22.43422 -21.72200 -19.93002 -18.69549 -18.19669 -17.06613 -16.52914 -16.25322 -15.76911 -15.48316 -15.23888 -15.08049 -14.92424 -14.47453 -14.21622 -13.79317 -13.63142 -13.42487 -12.84993 -12.71141 -12.67173 -12.11152 -11.83888 -11.72325 -11.33259 -11.26062 -11.19066 -11.16443 -11.02618 -10.86075 -10.57850 -10.39231 -10.23968 -9.82697 -9.74166 -9.68754 -9.36123 -9.14529 -8.90535 -8.51439 -7.41551 -6.20043 -4.29678 1.27458 1.52035 1.73546 2.79042 3.20584 3.27584 3.29162 3.49765 3.63725 4.03741 4.17151 4.29118 4.46771 4.55869 4.74764 4.83126 4.96954 5.11809 5.15981 5.35093 5.37930 5.41886 5.47455 5.52103 5.63392 5.68921 6.04958 6.31108 6.36136 6.56804 6.65150 6.90294 6.96701 7.01954 7.20792 7.27270 7.48537 7.56389 7.60439 7.81809 8.08515 8.32814 8.61313 8.87492 9.36969 10.85155 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.003932 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.546579 B = 7118.933578 C = 9059.576590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.278 3.722 4 H 0.059 0.941 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.656 5.656 14 C 0.620 3.380 15 N -0.559 5.559 16 C 0.293 3.707 17 Cl -0.019 7.019 18 C -0.315 4.315 19 C 0.411 3.589 20 O -0.284 6.284 21 C 0.057 3.943 22 H 0.111 0.889 23 C -0.154 4.154 24 C 0.053 3.947 25 O -0.378 6.378 26 C 0.037 3.963 27 N -0.635 5.635 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.103 0.897 32 H 0.031 0.969 33 H 0.266 0.734 34 H 0.406 0.594 35 H 0.149 0.851 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.963 8.300 11.465 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.077 0.923 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.285 5.285 14 C 0.263 3.737 15 N -0.288 5.288 16 C 0.116 3.884 17 Cl 0.009 6.991 18 C -0.345 4.345 19 C 0.222 3.778 20 O -0.189 6.189 21 C 0.000 4.000 22 H 0.129 0.871 23 C -0.192 4.192 24 C -0.023 4.023 25 O -0.297 6.297 26 C -0.040 4.040 27 N -0.377 5.377 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.121 0.879 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.242 0.758 35 H 0.167 0.833 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.251 7.663 11.164 16.399 hybrid contribution 0.481 0.362 -0.076 0.607 sum -8.770 8.025 11.088 16.256 Atomic orbital electron populations 1.21822 0.98376 0.98002 1.00790 1.21957 0.92640 0.99573 1.02470 1.19005 0.94365 0.89205 0.79756 0.92286 1.21184 0.90412 1.39522 1.06534 0.92020 1.24841 0.98692 0.94628 0.95237 1.69881 1.35190 1.37277 1.09296 0.86433 0.84669 0.78508 0.77428 1.20487 1.20998 1.19865 1.45415 1.09242 1.54574 1.19292 1.18783 0.87545 0.85384 0.81987 1.67584 1.03717 1.26221 1.31301 1.21186 0.89448 0.90148 0.87586 1.98407 1.59879 1.96580 1.44232 1.20823 1.03974 1.16793 0.92870 1.19342 0.87652 0.85664 0.85184 1.86272 1.41695 1.71152 1.19786 1.23970 0.94164 0.95333 0.86569 0.87107 1.23477 1.03827 0.97511 0.94352 1.23433 0.99525 0.82079 0.97304 1.88441 1.89580 1.25808 1.25914 1.23531 1.02491 0.96538 0.81398 1.67444 1.19795 1.23065 1.27372 0.95351 0.92386 0.95791 0.87915 0.95055 0.92435 0.75758 0.83305 0.88844 0.89041 0.89056 0.91528 0.90390 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.43 37.15 0.31 -2.46 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.28 6.60 2.24 -69.08 -0.15 6.45 16 4 H 0.06 1.58 7.50 -51.93 -0.39 1.19 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -23.63 11.29 55.43 0.63 -23.00 16 9 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.66 -13.44 5.15 -56.94 -0.29 -13.73 16 14 C 0.62 12.02 6.99 -322.88 -2.26 9.76 16 15 N -0.56 -10.90 6.35 -11.09 -0.07 -10.97 16 16 C 0.29 4.88 7.33 -17.17 -0.13 4.76 16 17 Cl -0.02 -0.28 29.15 -51.86 -1.51 -1.79 16 18 C -0.32 -4.68 9.92 -39.11 -0.39 -5.07 16 19 C 0.41 6.36 7.52 -16.74 -0.13 6.23 16 20 O -0.28 -3.79 9.87 -18.26 -0.18 -3.97 16 21 C 0.06 0.66 3.24 -24.78 -0.08 0.58 16 22 H 0.11 1.39 7.08 -51.93 -0.37 1.02 16 23 C -0.15 -1.32 6.93 -24.18 -0.17 -1.49 16 24 C 0.05 0.45 7.79 38.49 0.30 0.75 16 25 O -0.38 -4.49 11.36 -35.23 -0.40 -4.89 16 26 C 0.04 0.44 7.58 37.88 0.29 0.73 16 27 N -0.64 -10.89 8.85 -14.01 -0.12 -11.01 16 28 H 0.03 0.58 5.60 -51.92 -0.29 0.29 16 29 H 0.06 1.26 7.65 -51.93 -0.40 0.86 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.41 7.73 8.65 -40.82 -0.35 7.37 16 35 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.92 8.05 -51.92 -0.42 0.50 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -27.12 351.91 -10.06 -37.18 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.45 Total: 6.92 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.94 Total: 4.87 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.14 Total: -58.71 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.58 Total: -8.86 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.51 Total: -1.79 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.12 -10.06 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.868 kcal (2) G-P(sol) polarization free energy of solvation -27.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds