Wall clock time and date at job start Tue Mar 31 2020 14:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47300 * 2 1 4 4 H 1.08998 * 109.47251 * 305.00828 * 3 2 1 5 5 C 1.50699 * 109.47305 * 185.00251 * 3 2 1 6 6 H 1.08000 * 119.99951 * 239.99933 * 5 3 2 7 7 C 1.37881 * 119.99910 * 59.99956 * 5 3 2 8 8 N 1.31516 * 120.00128 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99757 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47293 * 90.00111 * 9 7 5 11 11 H 1.48501 * 109.46985 * 210.00450 * 9 7 5 12 12 H 1.48501 * 109.47247 * 330.00164 * 9 7 5 13 13 N 1.46503 * 109.46709 * 65.00054 * 3 2 1 14 14 C 1.38387 * 120.00454 * 274.99916 * 13 3 2 15 15 N 1.32500 * 119.17633 * 0.02739 * 14 13 3 16 16 C 1.32544 * 120.85570 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 120.37759 * 180.02562 * 16 15 14 18 18 C 1.38444 * 119.23861 * 359.74244 * 16 15 14 19 19 C 1.39293 * 118.49381 * 0.49711 * 18 16 15 20 20 O 1.35522 * 120.45533 * 179.78597 * 19 18 16 21 21 C 1.42898 * 116.99882 * 179.72217 * 20 19 18 22 22 H 1.09002 * 110.75293 * 29.29293 * 21 20 19 23 23 C 1.55305 * 110.84662 * 152.76846 * 21 20 19 24 24 C 1.55503 * 100.69731 * 152.41937 * 23 21 20 25 25 O 1.43649 * 105.17486 * 323.57822 * 24 23 21 26 26 C 1.43232 * 109.97368 * 24.43551 * 25 24 23 27 27 N 1.32451 * 119.18499 * 179.97438 * 14 13 3 28 28 H 1.09009 * 109.46918 * 299.99764 * 1 2 3 29 29 H 1.08998 * 109.47589 * 59.99151 * 1 2 3 30 30 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47014 * 240.00717 * 2 1 3 32 32 H 1.08993 * 109.47683 * 120.00364 * 2 1 3 33 33 H 0.96995 * 119.99779 * 180.02562 * 8 7 5 34 34 H 0.97002 * 119.99341 * 95.00645 * 13 3 2 35 35 H 1.07998 * 120.75122 * 180.27511 * 18 16 15 36 36 H 1.08999 * 111.12419 * 270.43803 * 23 21 20 37 37 H 1.08995 * 111.13053 * 34.60213 * 23 21 20 38 38 H 1.08999 * 110.28337 * 204.65226 * 24 23 21 39 39 H 1.09000 * 110.29205 * 82.50380 * 24 23 21 40 40 H 1.09009 * 109.83173 * 238.77615 * 26 25 24 41 41 H 1.08999 * 109.90937 * 117.84744 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8813 -1.3820 10 1 6.5548 -0.3501 -0.7604 11 1 6.3827 0.9226 -2.8175 12 1 6.5568 2.0739 -0.6903 13 7 1.6524 2.0974 1.2519 14 6 0.4025 2.6796 1.3702 15 7 -0.4310 2.6346 0.3412 16 6 -1.6362 3.1809 0.4183 17 17 -2.7186 3.1142 -0.9373 18 6 -2.0241 3.8000 1.5943 19 6 -1.1227 3.8347 2.6556 20 8 -1.4593 4.4343 3.8235 21 6 -0.4809 4.4215 4.8649 22 1 0.5262 4.4042 4.4484 23 6 -0.6664 5.6379 5.8124 24 6 -0.0833 5.0650 7.1352 25 8 -0.4742 3.6828 7.1509 26 6 -0.7039 3.2241 5.8135 27 7 0.0688 3.2669 2.5096 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8291 -0.0609 -2.9500 34 1 2.2720 2.1231 1.9978 35 1 -3.0020 4.2491 1.6854 36 1 -0.0925 6.4972 5.4656 37 1 -1.7206 5.8915 5.9246 38 1 -0.5071 5.5877 7.9927 39 1 1.0033 5.1509 7.1378 40 1 -1.7276 2.8620 5.7175 41 1 -0.0046 2.4243 5.5701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:35 Heat of formation + Delta-G solvation = -42.054079 kcal Electronic energy + Delta-G solvation = -25911.945397 eV Core-core repulsion = 22046.314221 eV Total energy + Delta-G solvation = -3865.631177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.32263 -40.80935 -39.11791 -38.16381 -37.49630 -34.78968 -34.18005 -33.10063 -32.33718 -31.30499 -29.90693 -28.67639 -25.57078 -25.21889 -24.19607 -23.50605 -22.69885 -21.62428 -20.03707 -19.52072 -18.38234 -17.84390 -17.41370 -17.03953 -16.79767 -16.71628 -16.44136 -15.99985 -15.82623 -15.57834 -15.30670 -14.67291 -14.56737 -14.32775 -14.20770 -13.61783 -13.47859 -13.32841 -13.16376 -12.87676 -12.68751 -12.58510 -12.42825 -12.25517 -12.15862 -12.06552 -12.03066 -11.70415 -11.54178 -11.16661 -10.95523 -10.72532 -10.62035 -10.42314 -10.30438 -8.93259 -8.16080 -6.32056 -0.04832 0.20183 0.49084 1.44578 1.45561 1.54915 1.67735 2.03790 2.44198 2.72423 2.82798 3.13822 3.22039 3.32656 3.67410 3.73135 3.94651 4.05221 4.13126 4.21082 4.24871 4.52620 4.55664 4.58222 4.62480 4.74372 4.77826 4.84155 4.85793 5.02305 5.10107 5.28096 5.45505 5.58222 5.62857 5.68816 5.84027 5.84977 6.01820 6.04242 6.23145 6.70117 6.74637 7.28932 7.42641 8.88717 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.003932 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.546579 B = 7118.933578 C = 9059.576590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C 0.294 3.706 4 H 0.023 0.977 5 C -0.552 4.552 6 H 0.064 0.936 7 C 0.024 3.976 8 N -0.907 5.907 9 Si 0.965 3.035 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.269 1.269 13 N -0.666 5.666 14 C 0.610 3.390 15 N -0.589 5.589 16 C 0.278 3.722 17 Cl -0.002 7.002 18 C -0.296 4.296 19 C 0.407 3.593 20 O -0.276 6.276 21 C 0.050 3.950 22 H 0.100 0.900 23 C -0.143 4.143 24 C 0.048 3.952 25 O -0.396 6.396 26 C 0.041 3.959 27 N -0.632 5.632 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.266 0.734 34 H 0.411 0.589 35 H 0.180 0.820 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.605 9.590 12.918 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.159 4.159 3 C 0.191 3.809 4 H 0.041 0.959 5 C -0.591 4.591 6 H 0.082 0.918 7 C -0.177 4.177 8 N -0.545 5.545 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.297 5.297 14 C 0.253 3.747 15 N -0.319 5.319 16 C 0.104 3.896 17 Cl 0.026 6.974 18 C -0.324 4.324 19 C 0.218 3.782 20 O -0.181 6.181 21 C -0.007 4.007 22 H 0.118 0.882 23 C -0.181 4.181 24 C -0.028 4.028 25 O -0.316 6.316 26 C -0.036 4.036 27 N -0.374 5.374 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.247 0.753 35 H 0.198 0.802 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.952 8.994 12.651 18.439 hybrid contribution 0.548 0.063 -0.443 0.707 sum -9.404 9.057 12.208 17.875 Atomic orbital electron populations 1.21624 0.96618 0.98722 1.00269 1.21794 0.94109 0.99047 1.00961 1.18509 0.93304 0.89072 0.80052 0.95925 1.21518 0.91573 1.39309 1.06670 0.91785 1.25607 1.02768 0.94337 0.94980 1.70010 1.36773 1.37991 1.09723 0.85459 0.79719 0.78627 0.77204 1.19932 1.21000 1.19386 1.44999 1.10280 1.55988 1.18413 1.18755 0.87258 0.85949 0.82720 1.67537 1.04952 1.27534 1.31909 1.21489 0.89027 0.90289 0.88830 1.98409 1.58926 1.96492 1.43559 1.21145 1.04818 1.14819 0.91666 1.19575 0.87161 0.85326 0.86160 1.86297 1.42053 1.70407 1.19302 1.24155 0.93227 0.97024 0.86300 0.88203 1.23506 1.04734 0.96611 0.93202 1.23691 1.00322 0.80586 0.98172 1.88422 1.89785 1.27768 1.25637 1.23418 1.02010 0.96424 0.81773 1.67428 1.20723 1.22803 1.26427 0.95107 0.93554 0.94310 0.90559 0.95168 0.92495 0.75250 0.80217 0.87095 0.88228 0.86714 0.90701 0.90550 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.84 8.43 71.98 0.61 -4.23 16 2 C -0.12 -5.68 5.45 30.59 0.17 -5.52 16 3 C 0.29 14.35 2.24 44.25 0.10 14.45 16 4 H 0.02 1.28 7.50 -2.39 -0.02 1.26 16 5 C -0.55 -28.62 8.73 25.60 0.22 -28.39 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 7 C 0.02 1.26 5.29 84.66 0.45 1.71 16 8 N -0.91 -49.86 11.29 21.45 0.24 -49.62 16 9 Si 0.96 41.50 29.54 68.60 2.03 43.53 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 N -0.67 -27.78 5.15 -334.05 -1.72 -29.51 16 14 C 0.61 23.76 6.99 261.51 1.83 25.58 16 15 N -0.59 -23.04 6.35 -189.00 -1.20 -24.24 16 16 C 0.28 8.99 7.33 84.63 0.62 9.61 16 17 Cl 0.00 -0.07 29.15 -2.72 -0.08 -0.15 16 18 C -0.30 -8.17 9.92 22.57 0.22 -7.95 16 19 C 0.41 11.94 7.52 84.80 0.64 12.58 16 20 O -0.28 -6.77 9.87 -88.25 -0.87 -7.65 16 21 C 0.05 1.07 3.24 31.86 0.10 1.17 16 22 H 0.10 2.40 7.08 -2.39 -0.02 2.39 16 23 C -0.14 -2.06 6.93 32.25 0.22 -1.84 16 24 C 0.05 0.69 7.79 72.84 0.57 1.26 16 25 O -0.40 -8.80 11.36 -148.98 -1.69 -10.49 16 26 C 0.04 0.93 7.58 72.45 0.55 1.48 16 27 N -0.63 -21.32 8.85 -310.91 -2.75 -24.07 16 28 H 0.03 1.26 5.60 -2.38 -0.01 1.25 16 29 H 0.05 2.04 7.65 -2.39 -0.02 2.02 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 4.04 5.95 -2.38 -0.01 4.03 16 32 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.41 15.93 8.65 -92.71 -0.80 15.13 16 35 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 36 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.73 8.05 -2.38 -0.02 1.71 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -58.69 351.91 0.52 -58.18 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.27 Total: 24.13 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 6.30 Total: 19.90 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -5.43 Total: -127.44 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -2.56 Total: -18.14 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.08 Total: -0.15 kcal Total: -58.69 0.52 -58.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.122 kcal (2) G-P(sol) polarization free energy of solvation -58.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds