Wall clock time and date at job start Tue Mar 31 2020 14:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 H 1.08990 * 109.47173 * 304.99823 * 3 2 1 5 5 C 1.50705 * 109.47260 * 184.99490 * 3 2 1 6 6 H 1.07991 * 119.99976 * 240.00314 * 5 3 2 7 7 C 1.37885 * 119.99592 * 60.00206 * 5 3 2 8 8 N 1.31512 * 119.99797 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99577 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47456 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47049 * 120.00040 * 9 7 5 12 12 H 1.48499 * 109.47347 * 239.99866 * 9 7 5 13 13 N 1.46499 * 109.46843 * 65.00023 * 3 2 1 14 14 C 1.38565 * 119.99838 * 274.99937 * 13 3 2 15 15 N 1.33029 * 120.52468 * 359.97438 * 14 13 3 16 16 C 1.31738 * 120.72817 * 179.97438 * 15 14 13 17 17 N 1.31788 * 121.84328 * 359.97438 * 16 15 14 18 18 C 1.32656 * 120.98637 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 120.41659 * 180.02562 * 18 17 16 20 20 C 1.38318 * 119.16757 * 359.75378 * 18 17 16 21 21 C 1.50701 * 120.84082 * 180.27872 * 20 18 17 22 22 H 1.08999 * 109.47390 * 180.19979 * 21 20 18 23 23 C 1.52999 * 109.47302 * 60.19463 * 21 20 18 24 24 C 1.50700 * 109.47159 * 300.19608 * 21 20 18 25 25 O 1.20833 * 119.99411 * 359.97438 * 24 21 20 26 26 O 1.34221 * 120.00359 * 180.02562 * 24 21 20 27 27 C 1.45202 * 117.00363 * 180.02562 * 26 24 21 28 28 H 1.08997 * 109.47338 * 299.99975 * 1 2 3 29 29 H 1.08996 * 109.46997 * 60.00461 * 1 2 3 30 30 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47741 * 239.99846 * 2 1 3 32 32 H 1.09005 * 109.47114 * 120.00087 * 2 1 3 33 33 H 0.97008 * 119.99478 * 179.97438 * 8 7 5 34 34 H 0.97005 * 120.00261 * 95.00113 * 13 3 2 35 35 H 1.08000 * 119.08115 * 179.97438 * 16 15 14 36 36 H 1.09005 * 109.47060 * 180.02562 * 23 21 20 37 37 H 1.08999 * 109.47320 * 300.00559 * 23 21 20 38 38 H 1.09003 * 109.47041 * 60.00506 * 23 21 20 39 39 H 1.09006 * 109.46935 * 300.00117 * 27 26 24 40 40 H 1.09003 * 109.47201 * 59.99702 * 27 26 24 41 41 H 1.08994 * 109.47527 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1237 6 1 4.1471 1.8888 0.6524 7 6 4.1434 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1727 9 14 6.0050 0.8813 -1.3816 10 1 6.5987 1.5462 -0.1940 11 1 6.4971 -0.5175 -1.4627 12 1 6.3992 1.6167 -2.6100 13 7 1.6524 2.0974 1.2518 14 6 0.4009 2.6802 1.3702 15 7 -0.4567 2.6516 0.3536 16 6 -1.6477 3.2040 0.4619 17 7 -2.0387 3.8022 1.5692 18 6 -1.2402 3.8718 2.6263 19 17 -1.7706 4.6628 4.0777 20 6 0.0181 3.3014 2.5594 21 6 0.9534 3.3530 3.7399 22 1 1.8883 2.8539 3.4848 23 6 0.3075 2.6470 4.9337 24 6 1.2326 4.7902 4.0972 25 8 0.7244 5.6811 3.4583 26 8 2.0464 5.0806 5.1242 27 6 2.2695 6.4863 5.4116 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8295 -0.0612 -2.9497 34 1 2.2719 2.1231 1.9979 35 1 -2.3227 3.1656 -0.3803 36 1 0.9839 2.6847 5.7877 37 1 -0.6273 3.1461 5.1887 38 1 0.1057 1.6074 4.6753 39 1 2.7131 6.9692 4.5408 40 1 1.3186 6.9644 5.6471 41 1 2.9438 6.5806 6.2627 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161056022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:28 Heat of formation + Delta-G solvation = -33.556114 kcal Electronic energy + Delta-G solvation = -26760.301136 eV Core-core repulsion = 22895.038459 eV Total energy + Delta-G solvation = -3865.262677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13290 -40.12360 -37.01013 -36.72180 -36.31249 -34.79134 -33.33910 -31.80577 -31.09752 -29.47582 -27.78958 -26.87999 -25.24602 -23.65249 -23.18927 -22.51773 -20.49620 -19.99993 -18.58886 -17.57391 -17.09125 -16.60795 -16.44582 -16.30682 -15.09399 -14.93050 -14.91475 -14.57522 -13.94555 -13.85584 -13.68078 -13.47787 -13.29417 -12.75822 -12.64925 -12.34312 -12.18609 -12.03880 -11.74816 -11.59596 -11.36896 -11.12188 -11.01141 -10.97477 -10.76542 -10.64312 -10.32445 -10.27254 -10.21825 -10.06612 -9.70392 -9.26376 -9.08131 -8.81251 -8.55075 -7.44391 -6.23307 -4.33047 1.14188 1.69404 1.88079 2.26597 2.72009 3.17391 3.26059 3.28039 3.70616 4.15750 4.25892 4.37789 4.67023 4.70762 4.93812 4.97233 5.02625 5.05569 5.09225 5.11119 5.40028 5.50705 5.55587 5.69618 5.83397 6.07373 6.27247 6.32214 6.35372 6.40679 6.58276 6.88308 6.98492 7.15707 7.24091 7.36576 7.54685 7.70987 7.78778 7.85606 8.07843 8.26670 8.59201 8.78655 9.33817 10.81837 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004537 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.968249 B = 6170.608441 C = 7555.103152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.059 0.941 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.673 5.673 14 C 0.471 3.529 15 N -0.553 5.553 16 C 0.355 3.645 17 N -0.579 5.579 18 C 0.283 3.717 19 Cl -0.030 7.030 20 C -0.261 4.261 21 C -0.018 4.018 22 H 0.113 0.887 23 C -0.153 4.153 24 C 0.464 3.536 25 O -0.489 6.489 26 O -0.358 6.358 27 C 0.036 3.964 28 H 0.030 0.970 29 H 0.056 0.944 30 H 0.023 0.977 31 H 0.102 0.898 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.399 0.601 35 H 0.198 0.802 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 5.400 13.364 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.077 0.923 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.299 5.299 14 C 0.223 3.777 15 N -0.278 5.278 16 C 0.066 3.934 17 N -0.302 5.302 18 C 0.113 3.887 19 Cl -0.002 7.002 20 C -0.275 4.275 21 C -0.039 4.039 22 H 0.131 0.869 23 C -0.211 4.211 24 C 0.306 3.694 25 O -0.374 6.374 26 O -0.274 6.274 27 C -0.058 4.058 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.120 0.880 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.215 0.785 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.163 5.504 12.153 14.696 hybrid contribution 1.722 0.356 0.875 1.964 sum -4.441 5.860 13.028 14.959 Atomic orbital electron populations 1.21833 0.98343 0.98054 1.00900 1.21947 0.92682 0.99526 1.02456 1.18998 0.94408 0.89306 0.80175 0.92337 1.21219 0.90507 1.39450 1.06554 0.92109 1.24838 0.98673 0.94584 0.95263 1.69887 1.35116 1.37323 1.09282 0.86400 0.84708 0.77857 0.78210 1.19751 1.20773 1.20800 1.45762 1.10128 1.54917 1.19102 1.18324 0.87349 0.85462 0.86597 1.68337 1.04662 1.24629 1.30150 1.24623 0.90142 0.85675 0.93010 1.67747 1.37129 1.24614 1.00710 1.21132 0.88747 0.89938 0.88899 1.98351 1.90791 1.78328 1.32692 1.19799 0.96863 1.13591 0.97221 1.19474 0.99745 0.89945 0.94731 0.86889 1.22048 1.02101 1.01205 0.95699 1.23591 0.75684 0.92603 0.77545 1.90697 1.47696 1.48922 1.50135 1.86483 1.62169 1.29731 1.49059 1.23236 1.01975 0.78778 1.01809 0.95056 0.92459 0.95804 0.87988 0.95081 0.92485 0.76369 0.78517 0.90757 0.90917 0.90737 0.91904 0.92038 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.45 37.16 0.31 -2.34 16 2 C -0.13 -2.83 5.45 -26.73 -0.15 -2.98 16 3 C 0.27 6.28 2.25 -69.08 -0.16 6.12 16 4 H 0.06 1.54 7.56 -51.93 -0.39 1.15 16 5 C -0.54 -13.45 8.73 -34.44 -0.30 -13.75 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.29 11.29 55.43 0.63 -22.66 16 9 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.67 -13.04 5.09 -54.92 -0.28 -13.32 16 14 C 0.47 8.74 6.03 -154.76 -0.93 7.81 16 15 N -0.55 -10.39 6.61 -13.83 -0.09 -10.48 16 16 C 0.36 5.83 12.28 -92.21 -1.13 4.70 16 17 N -0.58 -9.90 10.43 -11.76 -0.12 -10.03 16 18 C 0.28 4.76 6.49 -17.17 -0.11 4.65 16 19 Cl -0.03 -0.45 23.25 -51.86 -1.21 -1.65 16 20 C -0.26 -4.34 4.43 -104.11 -0.46 -4.80 16 21 C -0.02 -0.25 2.88 -92.92 -0.27 -0.52 16 22 H 0.11 1.47 5.81 -51.93 -0.30 1.17 16 23 C -0.15 -1.73 8.89 37.16 0.33 -1.40 16 24 C 0.46 6.83 6.23 36.01 0.22 7.06 16 25 O -0.49 -8.48 13.65 -18.76 -0.26 -8.73 16 26 O -0.36 -4.50 10.47 -39.23 -0.41 -4.91 16 27 C 0.04 0.35 10.56 101.05 1.07 1.41 16 28 H 0.03 0.60 5.59 -51.93 -0.29 0.31 16 29 H 0.06 1.17 7.69 -51.93 -0.40 0.77 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.40 6.95 6.29 -40.82 -0.26 6.69 16 35 H 0.20 2.49 8.06 -52.49 -0.42 2.06 16 36 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 37 H 0.07 0.85 5.09 -51.93 -0.26 0.58 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -29.00 344.64 -8.37 -37.37 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.13 Total: 6.70 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -1.67 Total: 7.65 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.13 Total: -56.49 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.67 Total: -13.64 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.21 Total: -1.65 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.00 -8.37 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161056022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.809 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds