Wall clock time and date at job start Tue Mar 31 2020 14:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 H 1.08990 * 109.47173 * 304.99823 * 3 2 1 5 5 C 1.50705 * 109.47260 * 184.99490 * 3 2 1 6 6 H 1.07991 * 119.99976 * 240.00314 * 5 3 2 7 7 C 1.37885 * 119.99592 * 60.00206 * 5 3 2 8 8 N 1.31512 * 119.99797 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99577 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47456 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47049 * 120.00040 * 9 7 5 12 12 H 1.48499 * 109.47347 * 239.99866 * 9 7 5 13 13 N 1.46499 * 109.46843 * 65.00023 * 3 2 1 14 14 C 1.38565 * 119.99838 * 274.99937 * 13 3 2 15 15 N 1.33029 * 120.52468 * 359.97438 * 14 13 3 16 16 C 1.31738 * 120.72817 * 179.97438 * 15 14 13 17 17 N 1.31788 * 121.84328 * 359.97438 * 16 15 14 18 18 C 1.32656 * 120.98637 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 120.41659 * 180.02562 * 18 17 16 20 20 C 1.38318 * 119.16757 * 359.75378 * 18 17 16 21 21 C 1.50701 * 120.84082 * 180.27872 * 20 18 17 22 22 H 1.08999 * 109.47390 * 180.19979 * 21 20 18 23 23 C 1.52999 * 109.47302 * 60.19463 * 21 20 18 24 24 C 1.50700 * 109.47159 * 300.19608 * 21 20 18 25 25 O 1.20833 * 119.99411 * 359.97438 * 24 21 20 26 26 O 1.34221 * 120.00359 * 180.02562 * 24 21 20 27 27 C 1.45202 * 117.00363 * 180.02562 * 26 24 21 28 28 H 1.08997 * 109.47338 * 299.99975 * 1 2 3 29 29 H 1.08996 * 109.46997 * 60.00461 * 1 2 3 30 30 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47741 * 239.99846 * 2 1 3 32 32 H 1.09005 * 109.47114 * 120.00087 * 2 1 3 33 33 H 0.97008 * 119.99478 * 179.97438 * 8 7 5 34 34 H 0.97005 * 120.00261 * 95.00113 * 13 3 2 35 35 H 1.08000 * 119.08115 * 179.97438 * 16 15 14 36 36 H 1.09005 * 109.47060 * 180.02562 * 23 21 20 37 37 H 1.08999 * 109.47320 * 300.00559 * 23 21 20 38 38 H 1.09003 * 109.47041 * 60.00506 * 23 21 20 39 39 H 1.09006 * 109.46935 * 300.00117 * 27 26 24 40 40 H 1.09003 * 109.47201 * 59.99702 * 27 26 24 41 41 H 1.08994 * 109.47527 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1237 6 1 4.1471 1.8888 0.6524 7 6 4.1434 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1727 9 14 6.0050 0.8813 -1.3816 10 1 6.5987 1.5462 -0.1940 11 1 6.4971 -0.5175 -1.4627 12 1 6.3992 1.6167 -2.6100 13 7 1.6524 2.0974 1.2518 14 6 0.4009 2.6802 1.3702 15 7 -0.4567 2.6516 0.3536 16 6 -1.6477 3.2040 0.4619 17 7 -2.0387 3.8022 1.5692 18 6 -1.2402 3.8718 2.6263 19 17 -1.7706 4.6628 4.0777 20 6 0.0181 3.3014 2.5594 21 6 0.9534 3.3530 3.7399 22 1 1.8883 2.8539 3.4848 23 6 0.3075 2.6470 4.9337 24 6 1.2326 4.7902 4.0972 25 8 0.7244 5.6811 3.4583 26 8 2.0464 5.0806 5.1242 27 6 2.2695 6.4863 5.4116 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8295 -0.0612 -2.9497 34 1 2.2719 2.1231 1.9979 35 1 -2.3227 3.1656 -0.3803 36 1 0.9839 2.6847 5.7877 37 1 -0.6273 3.1461 5.1887 38 1 0.1057 1.6074 4.6753 39 1 2.7131 6.9692 4.5408 40 1 1.3186 6.9644 5.6471 41 1 2.9438 6.5806 6.2627 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161056022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:27 Heat of formation + Delta-G solvation = -48.520182 kcal Electronic energy + Delta-G solvation = -26760.950027 eV Core-core repulsion = 22895.038459 eV Total energy + Delta-G solvation = -3865.911568 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40680 -41.29373 -38.47202 -37.95854 -37.50315 -36.06046 -34.94705 -33.42335 -32.62177 -30.81995 -28.73420 -28.54318 -26.36072 -25.26530 -24.44708 -24.04025 -21.70235 -21.59146 -20.01754 -18.89007 -18.32793 -18.15856 -17.72833 -17.36786 -16.81509 -16.33627 -16.29404 -15.78062 -15.56536 -14.99631 -14.85701 -14.77315 -14.49524 -14.42952 -13.82477 -13.61981 -13.27962 -13.15760 -13.14041 -12.93979 -12.84053 -12.83137 -12.70083 -12.25517 -12.21714 -12.07579 -11.81266 -11.71026 -11.51716 -11.43915 -11.25983 -10.97135 -10.53121 -10.49856 -10.15227 -8.94054 -8.16150 -6.31864 -0.14931 0.30619 0.61243 1.14172 1.42867 1.45896 1.55431 1.71531 2.22926 2.46564 2.83420 3.14314 3.19792 3.44129 3.53600 3.72281 3.83393 3.98489 4.27892 4.32074 4.34131 4.41610 4.59670 4.63516 4.70429 4.79414 4.82516 4.83819 5.08703 5.18586 5.20783 5.32433 5.35066 5.48819 5.60576 5.70782 5.73624 5.89268 6.14057 6.32545 6.66279 6.69942 6.83222 7.29372 7.40393 8.88541 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004537 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.968249 B = 6170.608441 C = 7555.103152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.286 3.714 4 H 0.020 0.980 5 C -0.551 4.551 6 H 0.064 0.936 7 C 0.025 3.975 8 N -0.907 5.907 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.457 3.543 15 N -0.578 5.578 16 C 0.352 3.648 17 N -0.583 5.583 18 C 0.269 3.731 19 Cl -0.011 7.011 20 C -0.254 4.254 21 C -0.023 4.023 22 H 0.122 0.878 23 C -0.147 4.147 24 C 0.467 3.533 25 O -0.522 6.522 26 O -0.355 6.355 27 C 0.028 3.972 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.408 0.592 35 H 0.230 0.770 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 5.649 15.260 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.183 3.817 4 H 0.038 0.962 5 C -0.590 4.590 6 H 0.082 0.918 7 C -0.177 4.177 8 N -0.545 5.545 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.305 5.305 14 C 0.210 3.790 15 N -0.303 5.303 16 C 0.063 3.937 17 N -0.306 5.306 18 C 0.100 3.900 19 Cl 0.018 6.982 20 C -0.267 4.267 21 C -0.043 4.043 22 H 0.139 0.861 23 C -0.204 4.204 24 C 0.310 3.690 25 O -0.410 6.410 26 O -0.271 6.271 27 C -0.065 4.065 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.246 0.754 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.891 5.772 14.099 16.334 hybrid contribution 1.569 0.388 0.361 1.656 sum -4.322 6.160 14.460 16.301 Atomic orbital electron populations 1.21651 0.96440 0.98867 1.00588 1.21777 0.94289 0.98772 1.01047 1.18524 0.93256 0.89357 0.80562 0.96201 1.21560 0.91730 1.39055 1.06621 0.91782 1.25583 1.02561 0.94411 0.95097 1.70015 1.36634 1.38107 1.09726 0.85462 0.80034 0.77809 0.78027 1.18973 1.20410 1.21126 1.45374 1.10974 1.55942 1.18251 1.18477 0.87060 0.85988 0.87448 1.68342 1.05584 1.25568 1.30808 1.25260 0.89860 0.84831 0.93739 1.67840 1.37308 1.24483 1.00989 1.21409 0.89005 0.90083 0.89533 1.98351 1.90570 1.77903 1.31413 1.19953 0.97225 1.12210 0.97326 1.19610 0.99777 0.90149 0.94773 0.86058 1.22040 1.02155 1.01007 0.95203 1.23687 0.75333 0.92481 0.77494 1.90686 1.49135 1.49817 1.51324 1.86472 1.61211 1.31491 1.47919 1.23548 1.02894 0.77157 1.02865 0.94528 0.93519 0.94315 0.90845 0.94822 0.92569 0.75375 0.75404 0.88527 0.91337 0.90146 0.92584 0.91883 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.65 8.45 71.98 0.61 -4.04 16 2 C -0.12 -5.39 5.45 30.59 0.17 -5.22 16 3 C 0.29 13.40 2.25 44.25 0.10 13.50 16 4 H 0.02 1.09 7.56 -2.39 -0.02 1.08 16 5 C -0.55 -27.71 8.73 25.60 0.22 -27.49 16 6 H 0.06 3.09 7.74 -2.92 -0.02 3.07 16 7 C 0.02 1.25 5.29 84.66 0.45 1.70 16 8 N -0.91 -48.99 11.29 21.45 0.24 -48.75 16 9 Si 0.96 40.78 29.54 68.60 2.03 42.80 16 10 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 13 N -0.68 -26.23 5.09 -327.68 -1.67 -27.90 16 14 C 0.46 16.87 6.03 133.12 0.80 17.67 16 15 N -0.58 -21.68 6.61 -197.66 -1.31 -22.99 16 16 C 0.35 11.29 12.28 180.90 2.22 13.51 16 17 N -0.58 -19.37 10.43 -191.11 -1.99 -21.36 16 18 C 0.27 8.79 6.49 84.59 0.55 9.33 16 19 Cl -0.01 -0.31 23.25 -2.72 -0.06 -0.38 16 20 C -0.25 -8.21 4.43 -19.53 -0.09 -8.30 16 21 C -0.02 -0.59 2.88 -12.29 -0.04 -0.63 16 22 H 0.12 2.97 5.81 -2.39 -0.01 2.95 16 23 C -0.15 -2.97 8.89 71.98 0.64 -2.33 16 24 C 0.47 13.06 6.23 71.24 0.44 13.50 16 25 O -0.52 -17.62 13.65 21.94 0.30 -17.32 16 26 O -0.35 -8.15 10.47 -51.33 -0.54 -8.69 16 27 C 0.03 0.49 10.56 113.37 1.20 1.69 16 28 H 0.04 1.38 5.59 -2.39 -0.01 1.37 16 29 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 30 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 3.76 5.95 -2.39 -0.01 3.75 16 32 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.26 13.63 8.31 -92.70 -0.77 12.86 16 34 H 0.41 14.00 6.29 -92.70 -0.58 13.42 16 35 H 0.23 5.48 8.06 -2.91 -0.02 5.45 16 36 H 0.10 1.53 8.11 -2.38 -0.02 1.51 16 37 H 0.07 1.44 5.09 -2.39 -0.01 1.43 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.05 8.13 -2.38 -0.02 1.03 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -62.43 344.64 4.77 -57.66 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.50 Total: 24.04 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 7.28 Total: 22.89 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -4.72 Total: -121.00 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.24 Total: -26.01 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.06 Total: -0.38 kcal Total: -62.43 4.77 -57.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161056022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.137 kcal (2) G-P(sol) polarization free energy of solvation -62.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds