Wall clock time and date at job start Tue Mar 31 2020 14:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08993 * 109.47768 * 305.00075 * 3 2 1 5 5 C 1.50709 * 109.46788 * 184.99743 * 3 2 1 6 6 H 1.07993 * 120.00197 * 240.00011 * 5 3 2 7 7 C 1.37877 * 119.99452 * 60.00810 * 5 3 2 8 8 N 1.31511 * 120.00437 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47169 * 59.99342 * 9 7 5 11 11 H 1.48493 * 109.47407 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46874 * 299.99809 * 9 7 5 13 13 N 1.46501 * 109.47174 * 65.00624 * 3 2 1 14 14 C 1.38563 * 119.99751 * 274.99561 * 13 3 2 15 15 N 1.33035 * 120.51920 * 359.97438 * 14 13 3 16 16 C 1.31750 * 120.72066 * 180.02562 * 15 14 13 17 17 N 1.31786 * 121.84465 * 359.97438 * 16 15 14 18 18 C 1.32663 * 120.98776 * 0.02633 * 17 16 15 19 19 Cl 1.73599 * 120.41528 * 180.02562 * 18 17 16 20 20 C 1.38314 * 119.16668 * 359.71877 * 18 17 16 21 21 C 1.50696 * 120.84084 * 180.29983 * 20 18 17 22 22 H 1.09000 * 109.47348 * 180.22287 * 21 20 18 23 23 C 1.53004 * 109.47058 * 300.22397 * 21 20 18 24 24 C 1.50701 * 109.47262 * 60.22552 * 21 20 18 25 25 O 1.20829 * 119.99638 * 359.97438 * 24 21 20 26 26 O 1.34228 * 120.00180 * 180.02562 * 24 21 20 27 27 C 1.45196 * 117.00054 * 180.02562 * 26 24 21 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 33 33 H 0.96995 * 120.00258 * 180.02562 * 8 7 5 34 34 H 0.96998 * 120.00675 * 94.98903 * 13 3 2 35 35 H 1.07999 * 119.07587 * 180.02562 * 16 15 14 36 36 H 1.08995 * 109.46689 * 59.99908 * 23 21 20 37 37 H 1.08995 * 109.47021 * 179.97438 * 23 21 20 38 38 H 1.09003 * 109.47180 * 299.99912 * 23 21 20 39 39 H 1.08997 * 109.46949 * 179.97438 * 27 26 24 40 40 H 1.09003 * 109.46756 * 299.99363 * 27 26 24 41 41 H 1.09003 * 109.47616 * 59.99271 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3369 -2.1729 9 14 6.0049 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2350 11 1 6.3978 0.2171 -2.6504 12 1 6.4994 2.2817 -1.3821 13 7 1.6524 2.0974 1.2519 14 6 0.4009 2.6802 1.3703 15 7 -0.4566 2.6515 0.3537 16 6 -1.6474 3.2048 0.4618 17 7 -2.0379 3.8039 1.5687 18 6 -1.2393 3.8737 2.6258 19 17 -1.7691 4.6659 4.0768 20 6 0.0183 3.3018 2.5594 21 6 0.9536 3.3530 3.7400 22 1 1.8880 2.8530 3.4852 23 6 1.2381 4.8121 4.1022 24 6 0.3167 2.6584 4.9160 25 8 -0.7840 2.1721 4.8067 26 8 0.9717 2.5809 6.0850 27 6 0.2978 1.8969 7.1741 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.8293 -0.0615 -2.9496 34 1 2.2719 2.1231 1.9979 35 1 -2.3228 3.1656 -0.3801 36 1 0.3036 5.3119 4.3570 37 1 1.9141 4.8491 4.9564 38 1 1.6987 5.3145 3.2516 39 1 0.9353 1.9054 8.0582 40 1 -0.6402 2.4052 7.3972 41 1 0.0926 0.8663 6.8844 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161056024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:30 Heat of formation + Delta-G solvation = -33.589723 kcal Electronic energy + Delta-G solvation = -26791.983263 eV Core-core repulsion = 22926.719128 eV Total energy + Delta-G solvation = -3865.264135 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.13568 -40.13048 -37.01042 -36.72615 -36.31902 -34.79432 -33.33652 -31.80448 -31.08081 -29.47555 -27.80134 -26.87148 -25.24480 -23.64544 -23.19581 -22.50941 -20.50408 -19.99311 -18.58860 -17.58422 -17.09771 -16.56679 -16.46487 -16.31475 -15.13328 -15.03147 -14.75813 -14.61007 -13.95674 -13.85214 -13.67582 -13.49394 -13.26914 -12.79170 -12.60278 -12.33889 -12.11964 -12.02182 -11.88863 -11.56355 -11.34620 -11.11542 -11.01978 -10.95509 -10.77911 -10.65851 -10.31296 -10.28828 -10.15023 -10.10096 -9.69649 -9.25591 -9.09534 -8.81247 -8.54600 -7.44029 -6.22614 -4.32853 1.14160 1.69232 1.87986 2.25249 2.71021 3.19503 3.25566 3.26064 3.70577 4.15742 4.25870 4.37917 4.67020 4.70836 4.93172 4.98018 5.01301 5.05086 5.09233 5.10155 5.38815 5.51213 5.55762 5.70662 5.84272 6.08796 6.29584 6.34340 6.35189 6.40960 6.59913 6.90050 7.00463 7.16248 7.25221 7.37115 7.54419 7.71514 7.77607 7.85317 8.08270 8.26852 8.58998 8.78590 9.33923 10.82413 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014325 B = 0.004301 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.095150 B = 6507.798631 C = 7386.841349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.060 0.940 5 C -0.540 4.540 6 H 0.060 0.940 7 C 0.071 3.929 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.673 5.673 14 C 0.470 3.530 15 N -0.553 5.553 16 C 0.355 3.645 17 N -0.579 5.579 18 C 0.282 3.718 19 Cl -0.030 7.030 20 C -0.261 4.261 21 C -0.018 4.018 22 H 0.113 0.887 23 C -0.154 4.154 24 C 0.464 3.536 25 O -0.489 6.489 26 O -0.357 6.357 27 C 0.036 3.964 28 H 0.057 0.943 29 H 0.022 0.978 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.102 0.898 33 H 0.266 0.734 34 H 0.399 0.601 35 H 0.198 0.802 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 5.938 13.123 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.077 0.923 5 C -0.579 4.579 6 H 0.079 0.921 7 C -0.133 4.133 8 N -0.516 5.516 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.299 5.299 14 C 0.222 3.778 15 N -0.278 5.278 16 C 0.065 3.935 17 N -0.302 5.302 18 C 0.113 3.887 19 Cl -0.002 7.002 20 C -0.274 4.274 21 C -0.039 4.039 22 H 0.131 0.869 23 C -0.211 4.211 24 C 0.306 3.694 25 O -0.375 6.375 26 O -0.274 6.274 27 C -0.058 4.058 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.215 0.785 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.128 5.560 12.087 14.648 hybrid contribution 1.493 -0.188 1.111 1.870 sum -4.635 5.372 13.198 14.984 Atomic orbital electron populations 1.21836 0.98325 0.98096 1.00912 1.21953 0.92702 0.99612 1.02387 1.18990 0.94371 0.89275 0.80145 0.92264 1.21144 0.90473 1.39705 1.06554 0.92148 1.24836 0.98656 0.94565 0.95260 1.69862 1.35322 1.37137 1.09296 0.86508 0.84690 0.78391 0.77549 1.20142 1.21051 1.20120 1.45763 1.10196 1.54884 1.19073 1.18326 0.87378 0.85148 0.86901 1.68350 1.04727 1.24508 1.30172 1.24626 0.90116 0.85670 0.93051 1.67746 1.36728 1.24889 1.00818 1.21135 0.88453 0.90713 0.88450 1.98351 1.90533 1.77816 1.33462 1.19791 0.97433 1.13171 0.97034 1.19474 0.98164 0.98442 0.87823 0.86891 1.22063 1.03684 0.92387 1.03007 1.23605 0.84515 0.77552 0.83739 1.90693 1.20045 1.43407 1.83333 1.86488 1.48722 1.71239 1.20981 1.23234 0.98171 0.97031 0.87364 0.92440 0.95843 0.95015 0.95206 0.87975 0.92364 0.76376 0.78517 0.90891 0.90771 0.90645 0.88244 0.92023 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.45 37.16 0.31 -2.47 16 2 C -0.13 -2.91 5.45 -26.73 -0.15 -3.06 16 3 C 0.27 6.30 2.25 -69.08 -0.16 6.15 16 4 H 0.06 1.54 7.56 -51.93 -0.39 1.15 16 5 C -0.54 -13.37 8.73 -34.44 -0.30 -13.68 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.25 11.29 55.43 0.63 -22.63 16 9 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.67 -13.04 5.09 -54.92 -0.28 -13.32 16 14 C 0.47 8.74 6.03 -154.76 -0.93 7.80 16 15 N -0.55 -10.38 6.61 -13.82 -0.09 -10.47 16 16 C 0.36 5.83 12.28 -92.20 -1.13 4.69 16 17 N -0.58 -9.90 10.43 -11.76 -0.12 -10.02 16 18 C 0.28 4.75 6.50 -17.16 -0.11 4.64 16 19 Cl -0.03 -0.44 23.27 -51.86 -1.21 -1.65 16 20 C -0.26 -4.33 4.42 -104.12 -0.46 -4.79 16 21 C -0.02 -0.25 2.88 -92.92 -0.27 -0.52 16 22 H 0.11 1.46 5.81 -51.93 -0.30 1.16 16 23 C -0.15 -1.76 8.89 37.16 0.33 -1.43 16 24 C 0.46 6.76 6.24 36.01 0.22 6.98 16 25 O -0.49 -8.37 13.70 -18.75 -0.26 -8.63 16 26 O -0.36 -4.44 10.47 -39.25 -0.41 -4.85 16 27 C 0.04 0.34 10.56 101.05 1.07 1.41 16 28 H 0.06 1.20 7.69 -51.93 -0.40 0.80 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.65 5.59 -51.93 -0.29 0.36 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.40 6.94 6.29 -40.82 -0.26 6.68 16 35 H 0.20 2.49 8.06 -52.49 -0.42 2.06 16 36 H 0.07 0.86 5.04 -51.93 -0.26 0.60 16 37 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 41 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -28.84 344.66 -8.37 -37.21 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.13 Total: 7.04 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -1.67 Total: 7.43 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.13 Total: -56.44 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.67 Total: -13.48 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.21 Total: -1.65 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.84 -8.37 -37.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161056024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.618 kcal (2) G-P(sol) polarization free energy of solvation -28.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds