Wall clock time and date at job start Tue Mar 31 2020 14:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08993 * 109.47768 * 305.00075 * 3 2 1 5 5 C 1.50709 * 109.46788 * 184.99743 * 3 2 1 6 6 H 1.07993 * 120.00197 * 240.00011 * 5 3 2 7 7 C 1.37877 * 119.99452 * 60.00810 * 5 3 2 8 8 N 1.31511 * 120.00437 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47169 * 59.99342 * 9 7 5 11 11 H 1.48493 * 109.47407 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46874 * 299.99809 * 9 7 5 13 13 N 1.46501 * 109.47174 * 65.00624 * 3 2 1 14 14 C 1.38563 * 119.99751 * 274.99561 * 13 3 2 15 15 N 1.33035 * 120.51920 * 359.97438 * 14 13 3 16 16 C 1.31750 * 120.72066 * 180.02562 * 15 14 13 17 17 N 1.31786 * 121.84465 * 359.97438 * 16 15 14 18 18 C 1.32663 * 120.98776 * 0.02633 * 17 16 15 19 19 Cl 1.73599 * 120.41528 * 180.02562 * 18 17 16 20 20 C 1.38314 * 119.16668 * 359.71877 * 18 17 16 21 21 C 1.50696 * 120.84084 * 180.29983 * 20 18 17 22 22 H 1.09000 * 109.47348 * 180.22287 * 21 20 18 23 23 C 1.53004 * 109.47058 * 300.22397 * 21 20 18 24 24 C 1.50701 * 109.47262 * 60.22552 * 21 20 18 25 25 O 1.20829 * 119.99638 * 359.97438 * 24 21 20 26 26 O 1.34228 * 120.00180 * 180.02562 * 24 21 20 27 27 C 1.45196 * 117.00054 * 180.02562 * 26 24 21 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 33 33 H 0.96995 * 120.00258 * 180.02562 * 8 7 5 34 34 H 0.96998 * 120.00675 * 94.98903 * 13 3 2 35 35 H 1.07999 * 119.07587 * 180.02562 * 16 15 14 36 36 H 1.08995 * 109.46689 * 59.99908 * 23 21 20 37 37 H 1.08995 * 109.47021 * 179.97438 * 23 21 20 38 38 H 1.09003 * 109.47180 * 299.99912 * 23 21 20 39 39 H 1.08997 * 109.46949 * 179.97438 * 27 26 24 40 40 H 1.09003 * 109.46756 * 299.99363 * 27 26 24 41 41 H 1.09003 * 109.47616 * 59.99271 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3369 -2.1729 9 14 6.0049 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2350 11 1 6.3978 0.2171 -2.6504 12 1 6.4994 2.2817 -1.3821 13 7 1.6524 2.0974 1.2519 14 6 0.4009 2.6802 1.3703 15 7 -0.4566 2.6515 0.3537 16 6 -1.6474 3.2048 0.4618 17 7 -2.0379 3.8039 1.5687 18 6 -1.2393 3.8737 2.6258 19 17 -1.7691 4.6659 4.0768 20 6 0.0183 3.3018 2.5594 21 6 0.9536 3.3530 3.7400 22 1 1.8880 2.8530 3.4852 23 6 1.2381 4.8121 4.1022 24 6 0.3167 2.6584 4.9160 25 8 -0.7840 2.1721 4.8067 26 8 0.9717 2.5809 6.0850 27 6 0.2978 1.8969 7.1741 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.8293 -0.0615 -2.9496 34 1 2.2719 2.1231 1.9979 35 1 -2.3228 3.1656 -0.3801 36 1 0.3036 5.3119 4.3570 37 1 1.9141 4.8491 4.9564 38 1 1.6987 5.3145 3.2516 39 1 0.9353 1.9054 8.0582 40 1 -0.6402 2.4052 7.3972 41 1 0.0926 0.8663 6.8844 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161056024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:30 Heat of formation + Delta-G solvation = -48.340572 kcal Electronic energy + Delta-G solvation = -26792.622907 eV Core-core repulsion = 22926.719128 eV Total energy + Delta-G solvation = -3865.903780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.40620 -41.29116 -38.47590 -37.96041 -37.50274 -36.06447 -34.94095 -33.42420 -32.63491 -30.83084 -28.73679 -28.53388 -26.36506 -25.25898 -24.45619 -24.05110 -21.72267 -21.59160 -20.01540 -18.89768 -18.30720 -18.15183 -17.70090 -17.36920 -16.80657 -16.49094 -16.16141 -15.78545 -15.58649 -14.99917 -14.85027 -14.78394 -14.47498 -14.45045 -13.82197 -13.60604 -13.28064 -13.17499 -13.14490 -12.97355 -12.88984 -12.79850 -12.66120 -12.31806 -12.19408 -12.06968 -11.81652 -11.70647 -11.52494 -11.41595 -11.31508 -10.97035 -10.53463 -10.47868 -10.16341 -8.94052 -8.14311 -6.30405 -0.14941 0.30489 0.61009 1.14146 1.47510 1.47669 1.55209 1.71494 2.23224 2.48071 2.83380 3.16060 3.19775 3.44167 3.53623 3.72276 3.83241 3.98295 4.27991 4.32128 4.34493 4.41343 4.55298 4.58668 4.70730 4.76110 4.82085 4.83540 5.07122 5.17741 5.19786 5.29596 5.34735 5.45826 5.59623 5.68866 5.72949 5.87681 6.12971 6.32161 6.66625 6.70122 6.83833 7.29571 7.41622 8.90135 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014325 B = 0.004301 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.095150 B = 6507.798631 C = 7386.841349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.121 4.121 3 C 0.287 3.713 4 H 0.025 0.975 5 C -0.552 4.552 6 H 0.068 0.932 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.962 3.038 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.677 5.677 14 C 0.457 3.543 15 N -0.578 5.578 16 C 0.352 3.648 17 N -0.583 5.583 18 C 0.269 3.731 19 Cl -0.011 7.011 20 C -0.254 4.254 21 C -0.023 4.023 22 H 0.122 0.878 23 C -0.148 4.148 24 C 0.468 3.532 25 O -0.520 6.520 26 O -0.355 6.355 27 C 0.028 3.972 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.265 0.735 34 H 0.408 0.592 35 H 0.230 0.770 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.135 0.865 40 H 0.062 0.938 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 6.639 14.835 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.160 4.160 3 C 0.184 3.816 4 H 0.043 0.957 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.788 3.212 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.306 5.306 14 C 0.210 3.790 15 N -0.303 5.303 16 C 0.063 3.937 17 N -0.306 5.306 18 C 0.099 3.901 19 Cl 0.018 6.982 20 C -0.267 4.267 21 C -0.043 4.043 22 H 0.139 0.861 23 C -0.205 4.205 24 C 0.311 3.689 25 O -0.408 6.408 26 O -0.271 6.271 27 C -0.065 4.065 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.246 0.754 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.153 0.847 40 H 0.081 0.919 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.617 6.292 13.846 16.213 hybrid contribution 1.237 -0.358 0.682 1.457 sum -4.380 5.934 14.529 16.293 Atomic orbital electron populations 1.21651 0.96705 0.98688 1.00470 1.21805 0.94045 0.99334 1.00834 1.18513 0.93403 0.88991 0.80660 0.95732 1.21508 0.91576 1.39259 1.06675 0.91429 1.25599 1.02630 0.94365 0.95080 1.69998 1.36847 1.38013 1.09743 0.85546 0.79888 0.78391 0.77402 1.19413 1.21281 1.19697 1.45373 1.11052 1.55898 1.18233 1.18479 0.87100 0.85614 0.87788 1.68348 1.05648 1.25406 1.30870 1.25263 0.89832 0.84827 0.93790 1.67839 1.36878 1.24792 1.01097 1.21412 0.88681 0.90930 0.89046 1.98351 1.90362 1.77290 1.32222 1.19946 0.97800 1.11769 0.97157 1.19602 0.97687 1.00195 0.86848 0.86054 1.22053 1.04023 0.90417 1.04043 1.23648 0.84027 0.76850 0.84382 1.90683 1.21389 1.44841 1.83932 1.86475 1.48616 1.71182 1.20831 1.23548 0.99133 0.96392 0.87387 0.93091 0.94644 0.95109 0.95442 0.90619 0.92581 0.75373 0.75398 0.91276 0.88521 0.90303 0.84727 0.91911 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 8.45 71.98 0.61 -4.28 16 2 C -0.12 -5.62 5.45 30.60 0.17 -5.45 16 3 C 0.29 13.45 2.25 44.25 0.10 13.55 16 4 H 0.02 1.33 7.56 -2.39 -0.02 1.31 16 5 C -0.55 -27.40 8.73 25.60 0.22 -27.18 16 6 H 0.07 3.17 7.74 -2.91 -0.02 3.15 16 7 C 0.02 1.23 5.29 84.66 0.45 1.68 16 8 N -0.91 -48.92 11.29 21.45 0.24 -48.68 16 9 Si 0.96 40.29 29.54 68.60 2.03 42.31 16 10 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 13 N -0.68 -26.23 5.09 -327.66 -1.67 -27.90 16 14 C 0.46 16.88 6.03 133.12 0.80 17.68 16 15 N -0.58 -21.68 6.61 -197.65 -1.31 -22.99 16 16 C 0.35 11.29 12.28 180.90 2.22 13.51 16 17 N -0.58 -19.39 10.43 -191.10 -1.99 -21.38 16 18 C 0.27 8.78 6.50 84.59 0.55 9.33 16 19 Cl -0.01 -0.31 23.27 -2.72 -0.06 -0.37 16 20 C -0.25 -8.21 4.42 -19.54 -0.09 -8.30 16 21 C -0.02 -0.60 2.88 -12.29 -0.04 -0.63 16 22 H 0.12 2.97 5.81 -2.39 -0.01 2.95 16 23 C -0.15 -3.07 8.89 71.98 0.64 -2.43 16 24 C 0.47 12.89 6.24 71.24 0.44 13.34 16 25 O -0.52 -17.26 13.70 21.95 0.30 -16.96 16 26 O -0.35 -8.02 10.47 -51.40 -0.54 -8.56 16 27 C 0.03 0.48 10.56 113.37 1.20 1.67 16 28 H 0.05 2.16 7.69 -2.39 -0.02 2.14 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.03 1.26 5.59 -2.39 -0.01 1.25 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 3.94 5.95 -2.39 -0.01 3.93 16 33 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 34 H 0.41 13.98 6.29 -92.71 -0.58 13.39 16 35 H 0.23 5.48 8.06 -2.91 -0.02 5.46 16 36 H 0.07 1.48 5.04 -2.39 -0.01 1.47 16 37 H 0.10 1.57 8.11 -2.39 -0.02 1.55 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 41 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 Total: -1.00 -61.79 344.66 4.78 -57.02 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.50 Total: 25.01 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 7.28 Total: 22.49 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -4.72 Total: -120.95 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.24 Total: -25.52 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.06 Total: -0.37 kcal Total: -61.79 4.78 -57.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161056024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.678 kcal (2) G-P(sol) polarization free energy of solvation -61.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds