Wall clock time and date at job start Tue Mar 31 2020 14:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46864 * 2 1 4 4 H 1.08994 * 109.47892 * 55.00014 * 3 2 1 5 5 C 1.53004 * 109.46957 * 294.99802 * 3 2 1 6 6 C 1.52999 * 109.47098 * 175.00233 * 3 2 1 7 7 H 1.09001 * 109.47030 * 304.99457 * 6 3 2 8 8 N 1.46504 * 109.47126 * 184.99883 * 6 3 2 9 9 C 1.38541 * 119.99623 * 154.99758 * 8 6 3 10 10 C 1.40035 * 120.45255 * 359.97438 * 9 8 6 11 11 C 1.38800 * 118.59275 * 180.02562 * 10 9 8 12 12 Cl 1.73603 * 120.33827 * 180.27745 * 11 10 9 13 13 N 1.32210 * 119.32756 * 359.97438 * 11 10 9 14 14 C 1.33419 * 120.85862 * 359.97438 * 13 11 10 15 15 C 1.41566 * 119.23652 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00301 * 173.65332 * 15 14 13 17 17 C 1.40055 * 120.00067 * 353.65018 * 15 14 13 18 18 N 1.30690 * 120.00202 * 6.31244 * 17 15 14 19 19 Si 1.86803 * 119.99942 * 186.31782 * 17 15 14 20 20 H 1.48503 * 109.47321 * 94.98240 * 19 17 15 21 21 H 1.48501 * 109.47036 * 214.98614 * 19 17 15 22 22 H 1.48504 * 109.47205 * 334.98717 * 19 17 15 23 23 N 1.32570 * 120.44370 * 179.97438 * 9 8 6 24 24 C 1.50700 * 109.47312 * 64.99626 * 6 3 2 25 25 O 1.20831 * 119.99803 * 120.00165 * 24 6 3 26 26 O 1.34221 * 119.99910 * 299.99925 * 24 6 3 27 27 C 1.45203 * 117.00107 * 179.97438 * 26 24 6 28 28 H 1.09004 * 109.46860 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47379 * 300.00047 * 1 2 3 30 30 H 1.09001 * 109.47349 * 60.00598 * 1 2 3 31 31 H 1.08997 * 109.47139 * 239.99518 * 2 1 3 32 32 H 1.08996 * 109.46825 * 119.99879 * 2 1 3 33 33 H 1.08999 * 109.47114 * 60.00348 * 5 3 2 34 34 H 1.09005 * 109.47299 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.47387 * 300.00148 * 5 3 2 36 36 H 0.96996 * 120.00400 * 334.99593 * 8 6 3 37 37 H 1.08001 * 120.70480 * 0.04817 * 10 9 8 38 38 H 0.96996 * 120.00339 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.47674 * 180.02562 * 27 26 24 40 40 H 1.08996 * 109.47267 * 300.00900 * 27 26 24 41 41 H 1.09005 * 109.46682 * 60.00822 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.8570 0.8801 1.0113 8 7 4.0432 2.8239 0.2457 9 6 5.2517 3.0860 0.8703 10 6 6.0233 2.0396 1.3906 11 6 7.2276 2.3462 2.0090 12 17 8.2235 1.0838 2.6635 13 7 7.6114 3.6088 2.0891 14 6 6.8573 4.5867 1.5839 15 6 7.3017 5.9267 1.6884 16 1 6.7547 6.7170 1.1958 17 6 8.4507 6.2276 2.4305 18 7 9.1817 5.2628 2.9233 19 14 8.9383 8.0081 2.7163 20 1 8.4039 8.4639 4.0247 21 1 10.4190 8.1214 2.7197 22 1 8.3796 8.8546 1.6315 23 7 5.6933 4.3308 0.9833 24 6 4.1705 0.8073 -1.0984 25 8 4.9245 1.4407 -1.7986 26 8 3.8725 -0.4636 -1.4106 27 6 4.4920 -1.0119 -2.6040 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5488 2.1251 -1.3970 34 1 1.9988 3.1541 -1.3077 35 1 2.0698 1.5874 -2.1492 36 1 3.5138 3.5537 -0.1120 37 1 5.6887 1.0158 1.3121 38 1 9.9776 5.4712 3.4369 39 1 4.1672 -2.0434 -2.7409 40 1 4.1974 -0.4204 -3.4708 41 1 5.5763 -0.9834 -2.4961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164128342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:17 Heat of formation + Delta-G solvation = -48.913993 kcal Electronic energy + Delta-G solvation = -26109.015955 eV Core-core repulsion = 22243.087310 eV Total energy + Delta-G solvation = -3865.928645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71474 -39.02965 -37.45634 -36.31335 -35.61988 -34.70017 -33.36799 -31.43703 -30.38629 -28.86178 -28.38473 -26.68302 -26.29115 -23.98217 -22.28309 -22.02189 -21.04025 -19.82367 -18.10629 -17.37062 -17.16017 -16.53287 -16.11864 -15.98914 -14.96533 -14.84420 -14.52072 -14.35976 -14.05482 -13.83540 -13.45449 -13.33669 -13.26489 -12.88404 -12.81840 -12.32746 -12.14788 -11.98084 -11.74640 -11.45590 -11.41748 -11.32277 -11.02747 -10.88474 -10.82230 -10.76074 -10.51502 -10.45988 -10.37963 -10.20881 -9.90989 -9.15115 -9.05687 -8.30765 -7.51440 -7.30021 -6.59238 -4.80904 2.39003 2.50021 2.60231 2.94951 3.02255 3.06038 3.10905 3.16436 3.66522 3.88693 4.48199 4.59856 4.69795 4.76548 4.91980 5.09457 5.14973 5.17648 5.33720 5.35488 5.45113 5.50961 5.55312 5.76015 5.83101 5.84387 5.89051 5.93338 6.03220 6.18904 6.25727 6.28108 6.35391 6.49591 6.77016 6.85184 7.08663 7.57177 7.95279 8.05876 8.14086 8.48532 8.56949 9.01188 10.06885 10.21733 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.003620 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.731101 B = 7733.241194 C = 8564.266439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.092 4.092 4 H 0.095 0.905 5 C -0.155 4.155 6 C 0.179 3.821 7 H 0.119 0.881 8 N -0.704 5.704 9 C 0.461 3.539 10 C -0.405 4.405 11 C 0.271 3.729 12 Cl -0.081 7.081 13 N -0.525 5.525 14 C 0.435 3.565 15 C -0.393 4.393 16 H 0.097 0.903 17 C 0.065 3.935 18 N -0.701 5.701 19 Si 0.921 3.079 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.259 1.259 23 N -0.634 5.634 24 C 0.440 3.560 25 O -0.485 6.485 26 O -0.359 6.359 27 C 0.032 3.968 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.404 0.596 37 H 0.106 0.894 38 H 0.277 0.723 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.734 -10.195 -4.978 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.111 4.111 4 H 0.113 0.887 5 C -0.212 4.212 6 C 0.069 3.931 7 H 0.136 0.864 8 N -0.341 5.341 9 C 0.214 3.786 10 C -0.437 4.437 11 C 0.090 3.910 12 Cl -0.053 7.053 13 N -0.246 5.246 14 C 0.199 3.801 15 C -0.428 4.428 16 H 0.115 0.885 17 C -0.163 4.163 18 N -0.322 5.322 19 Si 0.744 3.256 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.182 1.182 23 N -0.363 5.363 24 C 0.279 3.721 25 O -0.370 6.370 26 O -0.275 6.275 27 C -0.062 4.062 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.241 0.759 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.806 -9.304 -4.924 15.818 hybrid contribution 0.207 -0.210 -0.243 0.382 sum -11.599 -9.515 -5.167 15.867 Atomic orbital electron populations 1.21796 0.95601 1.01579 1.01819 1.21705 0.95863 0.94838 1.03933 1.21407 0.91183 0.98416 1.00094 0.88697 1.21970 1.02009 1.00835 0.96379 1.20444 0.93914 0.84739 0.94047 0.86396 1.43762 1.21411 1.04865 1.64053 1.18019 0.84466 0.89736 0.86341 1.20848 1.01322 0.98353 1.23212 1.21402 0.87615 0.90352 0.91613 1.98294 1.71660 1.50039 1.85330 1.68601 1.34127 0.96751 1.25157 1.19469 0.82663 0.92661 0.85297 1.19372 1.07034 0.90673 1.25687 0.88501 1.26139 0.95635 0.99880 0.94646 1.70147 1.09450 1.33288 1.19278 0.86097 0.78321 0.81361 0.79837 1.19270 1.19946 1.18223 1.68198 1.19461 1.18527 1.30147 1.24880 0.79594 0.80047 0.87622 1.90707 1.32805 1.63037 1.50402 1.86569 1.66477 1.29591 1.44907 1.23208 0.98718 0.98666 0.85617 0.92707 0.92763 0.92613 0.89809 0.91320 0.91413 0.92080 0.92853 0.75910 0.87637 0.91124 0.88421 0.92306 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.13 -1.11 4.88 -26.73 -0.13 -1.24 16 3 C -0.09 -0.96 2.32 -90.62 -0.21 -1.17 16 4 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 5 C -0.15 -1.57 8.50 37.16 0.32 -1.26 16 6 C 0.18 2.56 2.00 -69.08 -0.14 2.42 16 7 H 0.12 1.67 6.50 -51.93 -0.34 1.33 16 8 N -0.70 -12.68 4.68 -54.89 -0.26 -12.93 16 9 C 0.46 10.72 7.59 -154.98 -1.18 9.54 16 10 C -0.40 -9.41 9.07 -38.70 -0.35 -9.76 16 11 C 0.27 6.90 7.33 -17.18 -0.13 6.77 16 12 Cl -0.08 -1.76 29.15 -51.86 -1.51 -3.27 16 13 N -0.53 -14.88 7.89 -9.84 -0.08 -14.95 16 14 C 0.43 12.36 7.36 -158.35 -1.17 11.20 16 15 C -0.39 -10.69 9.37 -37.63 -0.35 -11.04 16 16 H 0.10 2.52 7.86 -52.48 -0.41 2.10 16 17 C 0.07 1.64 5.49 -17.36 -0.10 1.55 16 18 N -0.70 -18.54 11.45 55.55 0.64 -17.90 16 19 Si 0.92 18.43 29.56 -169.99 -5.03 13.40 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 23 N -0.63 -16.79 10.39 -11.89 -0.12 -16.91 16 24 C 0.44 6.86 5.68 36.01 0.20 7.06 16 25 O -0.49 -9.57 16.10 -18.75 -0.30 -9.87 16 26 O -0.36 -4.53 7.79 -39.23 -0.31 -4.84 16 27 C 0.03 0.33 10.56 101.05 1.07 1.40 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 6.57 -51.93 -0.34 0.05 16 31 H 0.08 0.79 5.77 -51.93 -0.30 0.49 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 34 H 0.06 0.67 6.77 -51.93 -0.35 0.32 16 35 H 0.05 0.59 7.07 -51.93 -0.37 0.22 16 36 H 0.40 6.83 7.30 -40.82 -0.30 6.53 16 37 H 0.11 2.18 6.32 -52.49 -0.33 1.84 16 38 H 0.28 6.60 8.29 -40.82 -0.34 6.27 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 41 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -32.45 354.14 -8.60 -41.06 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.17 Total: 6.15 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: -1.80 Total: 14.73 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.18 Total: -62.70 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.61 Total: -14.71 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.51 Total: -3.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.45 -8.60 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164128342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.858 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds