Wall clock time and date at job start Tue Mar 31 2020 14:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46864 * 2 1 4 4 H 1.08994 * 109.47892 * 55.00014 * 3 2 1 5 5 C 1.53004 * 109.46957 * 294.99802 * 3 2 1 6 6 C 1.52999 * 109.47098 * 175.00233 * 3 2 1 7 7 H 1.09001 * 109.47030 * 304.99457 * 6 3 2 8 8 N 1.46504 * 109.47126 * 184.99883 * 6 3 2 9 9 C 1.38541 * 119.99623 * 154.99758 * 8 6 3 10 10 C 1.40035 * 120.45255 * 359.97438 * 9 8 6 11 11 C 1.38800 * 118.59275 * 180.02562 * 10 9 8 12 12 Cl 1.73603 * 120.33827 * 180.27745 * 11 10 9 13 13 N 1.32210 * 119.32756 * 359.97438 * 11 10 9 14 14 C 1.33419 * 120.85862 * 359.97438 * 13 11 10 15 15 C 1.41566 * 119.23652 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00301 * 173.65332 * 15 14 13 17 17 C 1.40055 * 120.00067 * 353.65018 * 15 14 13 18 18 N 1.30690 * 120.00202 * 6.31244 * 17 15 14 19 19 Si 1.86803 * 119.99942 * 186.31782 * 17 15 14 20 20 H 1.48503 * 109.47321 * 94.98240 * 19 17 15 21 21 H 1.48501 * 109.47036 * 214.98614 * 19 17 15 22 22 H 1.48504 * 109.47205 * 334.98717 * 19 17 15 23 23 N 1.32570 * 120.44370 * 179.97438 * 9 8 6 24 24 C 1.50700 * 109.47312 * 64.99626 * 6 3 2 25 25 O 1.20831 * 119.99803 * 120.00165 * 24 6 3 26 26 O 1.34221 * 119.99910 * 299.99925 * 24 6 3 27 27 C 1.45203 * 117.00107 * 179.97438 * 26 24 6 28 28 H 1.09004 * 109.46860 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47379 * 300.00047 * 1 2 3 30 30 H 1.09001 * 109.47349 * 60.00598 * 1 2 3 31 31 H 1.08997 * 109.47139 * 239.99518 * 2 1 3 32 32 H 1.08996 * 109.46825 * 119.99879 * 2 1 3 33 33 H 1.08999 * 109.47114 * 60.00348 * 5 3 2 34 34 H 1.09005 * 109.47299 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.47387 * 300.00148 * 5 3 2 36 36 H 0.96996 * 120.00400 * 334.99593 * 8 6 3 37 37 H 1.08001 * 120.70480 * 0.04817 * 10 9 8 38 38 H 0.96996 * 120.00339 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.47674 * 180.02562 * 27 26 24 40 40 H 1.08996 * 109.47267 * 300.00900 * 27 26 24 41 41 H 1.09005 * 109.46682 * 60.00822 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.8570 0.8801 1.0113 8 7 4.0432 2.8239 0.2457 9 6 5.2517 3.0860 0.8703 10 6 6.0233 2.0396 1.3906 11 6 7.2276 2.3462 2.0090 12 17 8.2235 1.0838 2.6635 13 7 7.6114 3.6088 2.0891 14 6 6.8573 4.5867 1.5839 15 6 7.3017 5.9267 1.6884 16 1 6.7547 6.7170 1.1958 17 6 8.4507 6.2276 2.4305 18 7 9.1817 5.2628 2.9233 19 14 8.9383 8.0081 2.7163 20 1 8.4039 8.4639 4.0247 21 1 10.4190 8.1214 2.7197 22 1 8.3796 8.8546 1.6315 23 7 5.6933 4.3308 0.9833 24 6 4.1705 0.8073 -1.0984 25 8 4.9245 1.4407 -1.7986 26 8 3.8725 -0.4636 -1.4106 27 6 4.4920 -1.0119 -2.6040 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5488 2.1251 -1.3970 34 1 1.9988 3.1541 -1.3077 35 1 2.0698 1.5874 -2.1492 36 1 3.5138 3.5537 -0.1120 37 1 5.6887 1.0158 1.3121 38 1 9.9776 5.4712 3.4369 39 1 4.1672 -2.0434 -2.7409 40 1 4.1974 -0.4204 -3.4708 41 1 5.5763 -0.9834 -2.4961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164128342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:17 Heat of formation + Delta-G solvation = -68.248645 kcal Electronic energy + Delta-G solvation = -26109.854369 eV Core-core repulsion = 22243.087310 eV Total energy + Delta-G solvation = -3866.767058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96496 -40.83928 -38.62261 -37.51120 -37.44251 -36.21972 -35.10197 -33.20515 -31.85472 -30.14362 -29.42143 -28.38170 -27.55938 -24.89641 -24.08819 -23.70332 -22.23870 -20.87173 -19.89225 -18.72677 -18.49623 -18.13327 -17.51065 -17.35692 -16.61286 -16.05747 -15.73131 -15.63623 -15.51988 -15.43893 -14.81331 -14.73395 -14.59021 -14.32679 -13.89425 -13.22539 -13.22320 -13.13820 -13.06739 -12.89309 -12.78722 -12.74291 -12.57333 -12.08746 -12.07066 -12.00270 -11.91207 -11.78845 -11.56002 -11.38481 -11.29675 -10.97211 -10.95626 -10.20502 -9.48356 -9.02420 -8.47612 -6.82741 0.58320 1.00613 1.07228 1.15355 1.41900 1.50680 1.58579 1.66200 2.18514 2.28827 2.72152 3.49430 3.70654 3.80237 3.85038 4.00661 4.17626 4.25154 4.30557 4.32158 4.44510 4.50852 4.53538 4.62549 4.67877 4.75757 4.79056 4.88868 5.01409 5.03224 5.11531 5.16422 5.23542 5.30997 5.33067 5.51252 5.62332 5.87212 6.11765 6.39351 6.56750 6.65860 6.75103 7.13199 8.14068 8.33742 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.003620 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.731101 B = 7733.241194 C = 8564.266439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.083 4.083 4 H 0.106 0.894 5 C -0.153 4.153 6 C 0.172 3.828 7 H 0.124 0.876 8 N -0.692 5.692 9 C 0.456 3.544 10 C -0.401 4.401 11 C 0.249 3.751 12 Cl -0.055 7.055 13 N -0.560 5.560 14 C 0.407 3.593 15 C -0.425 4.425 16 H 0.096 0.904 17 C 0.024 3.976 18 N -0.738 5.738 19 Si 1.003 2.997 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.254 1.254 23 N -0.659 5.659 24 C 0.446 3.554 25 O -0.533 6.533 26 O -0.347 6.347 27 C 0.025 3.975 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.409 0.591 37 H 0.130 0.870 38 H 0.286 0.714 39 H 0.139 0.861 40 H 0.059 0.941 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.256 -10.992 -4.963 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.102 4.102 4 H 0.124 0.876 5 C -0.210 4.210 6 C 0.063 3.937 7 H 0.141 0.859 8 N -0.328 5.328 9 C 0.209 3.791 10 C -0.434 4.434 11 C 0.069 3.931 12 Cl -0.027 7.027 13 N -0.282 5.282 14 C 0.171 3.829 15 C -0.460 4.460 16 H 0.114 0.886 17 C -0.200 4.200 18 N -0.359 5.359 19 Si 0.821 3.179 20 H -0.184 1.184 21 H -0.188 1.188 22 H -0.178 1.178 23 N -0.389 5.389 24 C 0.287 3.713 25 O -0.422 6.422 26 O -0.262 6.262 27 C -0.068 4.068 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.246 0.754 37 H 0.148 0.852 38 H 0.097 0.903 39 H 0.157 0.843 40 H 0.077 0.923 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.390 -10.194 -4.925 17.535 hybrid contribution 0.587 -0.191 -0.325 0.698 sum -12.803 -10.385 -5.250 17.301 Atomic orbital electron populations 1.21776 0.94065 1.02403 1.02249 1.21690 0.97085 0.93223 1.03948 1.21448 0.87962 1.00061 1.00689 0.87576 1.21973 1.03541 0.99807 0.95711 1.20848 0.96437 0.82616 0.93778 0.85853 1.43857 1.19491 1.06893 1.62582 1.18366 0.85779 0.89013 0.85981 1.21082 1.00614 0.99520 1.22146 1.21861 0.88768 0.90498 0.91925 1.98282 1.71087 1.48368 1.84957 1.68598 1.35061 0.97769 1.26790 1.19901 0.83550 0.93504 0.85994 1.19726 1.08498 0.90604 1.27151 0.88568 1.27118 0.94664 1.04813 0.93451 1.70220 1.10033 1.35913 1.19745 0.84895 0.78275 0.74823 0.79870 1.18380 1.18788 1.17769 1.68238 1.19423 1.20141 1.31133 1.24987 0.78429 0.80621 0.87237 1.90701 1.35042 1.64309 1.52116 1.86567 1.66031 1.27853 1.45770 1.23520 0.98012 1.00740 0.84562 0.91749 0.92344 0.92185 0.90244 0.90861 0.88932 0.93302 0.93922 0.75362 0.85203 0.90304 0.84284 0.92263 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 71.98 0.70 -0.99 16 2 C -0.12 -1.81 4.88 30.59 0.15 -1.66 16 3 C -0.08 -1.56 2.32 -10.79 -0.03 -1.58 16 4 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 5 C -0.15 -2.85 8.50 71.98 0.61 -2.24 16 6 C 0.17 4.73 2.00 44.24 0.09 4.81 16 7 H 0.12 3.29 6.50 -2.39 -0.02 3.28 16 8 N -0.69 -24.86 4.68 -327.58 -1.53 -26.39 16 9 C 0.46 21.53 7.59 133.39 1.01 22.54 16 10 C -0.40 -18.76 9.07 22.84 0.21 -18.56 16 11 C 0.25 12.85 7.33 84.77 0.62 13.48 16 12 Cl -0.05 -2.38 29.15 -2.72 -0.08 -2.46 16 13 N -0.56 -32.68 7.89 -185.03 -1.46 -34.14 16 14 C 0.41 23.98 7.36 135.16 0.99 24.98 16 15 C -0.42 -23.89 9.37 23.53 0.22 -23.67 16 16 H 0.10 5.18 7.86 -2.91 -0.02 5.16 16 17 C 0.02 1.24 5.49 85.30 0.47 1.71 16 18 N -0.74 -39.85 11.45 21.84 0.25 -39.60 16 19 Si 1.00 37.95 29.56 68.60 2.03 39.98 16 20 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 21 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 22 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 23 N -0.66 -35.96 10.39 -191.55 -1.99 -37.95 16 24 C 0.45 13.56 5.68 71.24 0.40 13.97 16 25 O -0.53 -21.21 16.10 21.95 0.35 -20.86 16 26 O -0.35 -8.15 7.79 -51.33 -0.40 -8.55 16 27 C 0.03 0.48 10.56 113.37 1.20 1.67 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.64 6.57 -2.39 -0.02 0.62 16 31 H 0.08 1.27 5.77 -2.39 -0.01 1.26 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.26 6.56 -2.39 -0.02 1.25 16 34 H 0.05 1.03 6.77 -2.38 -0.02 1.01 16 35 H 0.04 0.89 7.07 -2.39 -0.02 0.87 16 36 H 0.41 13.86 7.30 -92.71 -0.68 13.18 16 37 H 0.13 5.25 6.32 -2.91 -0.02 5.23 16 38 H 0.29 13.79 8.29 -92.71 -0.77 13.02 16 39 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 41 H 0.05 1.07 8.13 -2.38 -0.02 1.05 16 Total: -1.00 -73.16 354.14 4.22 -68.94 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.40 Total: 26.56 kcal Atomic # 6 Polarization: 27.81 SS G_CDS: 6.65 Total: 34.45 kcal Atomic # 7 Polarization: -133.34 SS G_CDS: -4.73 Total: -138.07 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.05 Total: -29.40 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.08 Total: -2.46 kcal Total: -73.16 4.22 -68.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164128342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.692 kcal (2) G-P(sol) polarization free energy of solvation -73.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds