Wall clock time and date at job start Tue Mar 31 2020 15:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47111 * 2 1 4 4 C 1.46500 * 119.99728 * 269.99683 * 3 2 1 5 5 C 1.50709 * 109.47085 * 89.99965 * 4 3 2 6 6 H 1.07992 * 119.99695 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99571 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00499 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99558 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46798 * 89.99872 * 9 7 5 11 11 H 1.48491 * 109.47204 * 209.99982 * 9 7 5 12 12 H 1.48498 * 109.47294 * 330.00294 * 9 7 5 13 13 C 1.39014 * 120.00109 * 89.99308 * 3 2 1 14 14 C 1.39088 * 119.63644 * 5.00781 * 13 3 2 15 15 C 1.39538 * 118.96206 * 179.97438 * 14 13 3 16 16 C 1.48162 * 120.87219 * 180.02562 * 15 14 13 17 17 O 1.21513 * 120.00276 * 8.11979 * 16 15 14 18 18 N 1.34776 * 120.00008 * 188.11149 * 16 15 14 19 19 C 1.46497 * 120.00064 * 186.16853 * 18 16 15 20 20 O 1.41607 * 119.99796 * 6.16859 * 18 16 15 21 21 C 1.42900 * 113.99659 * 95.45906 * 20 18 16 22 22 C 1.39955 * 118.25038 * 359.97438 * 15 14 13 23 23 C 1.38129 * 119.16499 * 0.02562 * 22 15 14 24 24 Cl 1.73600 * 119.51880 * 180.02562 * 23 22 15 25 25 N 1.32007 * 120.96430 * 359.71529 * 23 22 15 26 26 H 1.09006 * 109.46968 * 60.00721 * 1 2 3 27 27 H 1.09003 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47457 * 300.00305 * 1 2 3 29 29 H 1.08996 * 109.46967 * 119.99220 * 2 1 3 30 30 H 1.08996 * 109.47457 * 239.99695 * 2 1 3 31 31 H 1.08995 * 109.47149 * 209.99497 * 4 3 2 32 32 H 1.08997 * 109.47314 * 330.00340 * 4 3 2 33 33 H 0.97003 * 120.00182 * 180.02562 * 8 7 5 34 34 H 1.08002 * 120.51538 * 0.02562 * 14 13 3 35 35 H 1.08999 * 109.47306 * 90.00545 * 19 18 16 36 36 H 1.09001 * 109.47244 * 209.99996 * 19 18 16 37 37 H 1.08998 * 109.47188 * 330.00148 * 19 18 16 38 38 H 1.09007 * 109.46656 * 180.02562 * 21 20 18 39 39 H 1.09003 * 109.46863 * 299.99111 * 21 20 18 40 40 H 1.08995 * 109.47752 * 59.99789 * 21 20 18 41 41 H 1.07997 * 120.41689 * 180.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 1.0066 2.7822 -1.7039 6 1 0.1157 2.7247 -1.0964 7 6 0.9953 3.5055 -2.8777 8 7 2.0804 3.5760 -3.6172 9 14 -0.5616 4.3855 -3.4174 10 1 -0.5708 5.7619 -2.8597 11 1 -0.6039 4.4519 -4.9002 12 1 -1.7476 3.6424 -2.9210 13 6 2.2499 2.0367 1.2039 14 6 2.1162 1.3425 2.4017 15 6 2.3526 2.0140 3.6018 16 6 2.2230 1.3155 4.9021 17 8 2.0532 0.1127 4.9314 18 7 2.2936 2.0143 6.0524 19 6 2.3014 1.3110 7.3374 20 8 2.3603 3.4284 6.0187 21 6 1.0944 4.0737 6.1710 22 6 2.7162 3.3642 3.5449 23 6 2.8271 3.9802 2.3135 24 17 3.2783 5.6545 2.2322 25 7 2.6010 3.3126 1.1974 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.0644 2.7985 -1.1384 32 1 2.5506 1.3451 -2.0284 33 1 2.0725 4.0852 -4.4428 34 1 1.8348 0.2998 2.4028 35 1 3.3293 1.0875 7.6231 36 1 1.8415 1.9406 8.0991 37 1 1.7393 0.3816 7.2464 38 1 1.2308 5.1546 6.1338 39 1 0.4294 3.7639 5.3647 40 1 0.6574 3.7950 7.1298 41 1 2.9077 3.9176 4.4523 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:46 Heat of formation + Delta-G solvation = 33.199449 kcal Electronic energy + Delta-G solvation = -26149.290270 eV Core-core repulsion = 22286.922331 eV Total energy + Delta-G solvation = -3862.367939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.57100 -39.28322 -37.69926 -36.71810 -35.85734 -33.30042 -32.78407 -32.47588 -30.55767 -29.50546 -27.89345 -26.73045 -26.52492 -23.82358 -23.49815 -22.34712 -21.16231 -20.27280 -18.23963 -17.36139 -16.53915 -16.45562 -16.33491 -16.03334 -15.55761 -14.86166 -14.66937 -14.57932 -14.47831 -14.18937 -13.94095 -13.66485 -13.24640 -12.93707 -12.92636 -12.65272 -12.21320 -12.12554 -11.94262 -11.55928 -11.32799 -11.17897 -10.98181 -10.91139 -10.73295 -10.63582 -10.51180 -10.22755 -10.07906 -9.86873 -9.48445 -9.28266 -8.93508 -8.89045 -8.40096 -6.92015 -5.99844 -4.05114 0.93215 1.55538 1.56923 2.17666 2.81304 3.31591 3.37867 3.39525 3.61431 3.74557 4.21320 4.45656 4.69238 4.92698 4.93959 5.00791 5.13042 5.20587 5.32244 5.32803 5.35687 5.38806 5.41491 5.56361 5.62971 5.75820 5.86377 5.94119 6.03465 6.15717 6.32417 6.35882 6.62863 6.78911 7.02366 7.09862 7.42653 7.73989 7.77982 7.91114 8.16321 8.25761 8.60027 8.98306 9.58590 11.06187 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.004128 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.563912 B = 6781.089521 C = 7903.536117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.580 5.580 4 C 0.253 3.747 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.434 3.566 14 C -0.194 4.194 15 C -0.051 4.051 16 C 0.582 3.418 17 O -0.514 6.514 18 N -0.479 5.479 19 C 0.084 3.916 20 O -0.134 6.134 21 C -0.011 4.011 22 C -0.216 4.216 23 C 0.225 3.775 24 Cl -0.043 7.043 25 N -0.500 5.500 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.145 0.855 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.325 -2.383 20.301 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.287 5.287 4 C 0.134 3.866 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.201 1.201 13 C 0.195 3.805 14 C -0.222 4.222 15 C -0.062 4.062 16 C 0.373 3.627 17 O -0.389 6.389 18 N -0.259 5.259 19 C -0.056 4.056 20 O -0.138 6.138 21 C -0.108 4.108 22 C -0.241 4.241 23 C 0.058 3.942 24 Cl -0.015 7.015 25 N -0.219 5.219 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.163 0.837 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.082 -2.436 19.083 19.238 hybrid contribution -1.212 0.692 0.332 1.435 sum -1.295 -1.745 19.414 19.535 Atomic orbital electron populations 1.22229 0.96220 1.01000 1.03381 1.21430 0.94543 0.82257 1.01968 1.47324 1.64951 1.12203 1.04203 1.19365 0.97601 0.92284 0.77396 1.21406 0.97385 1.30816 1.05983 0.92475 1.24887 0.96236 0.96309 0.96480 1.69920 1.27387 1.41661 1.14434 0.86583 0.83483 0.80292 0.77553 1.20615 1.21256 1.20076 1.17952 0.89439 0.86546 0.86526 1.21579 1.08491 1.01723 0.90379 1.19529 1.00868 0.93609 0.92164 1.18365 0.75371 0.86059 0.82946 1.90805 1.48632 1.13519 1.85970 1.49815 1.75108 0.94307 1.06663 1.21937 1.03229 0.97324 0.83086 1.90552 1.27862 1.00918 1.94421 1.23430 0.87355 0.98644 1.01404 1.22389 1.08545 0.94754 0.98418 1.21134 0.96480 0.87567 0.89048 1.98376 1.90428 1.14033 1.98656 1.66368 1.17582 1.07747 1.30217 0.90572 0.92669 0.93221 0.91635 0.90247 0.93449 0.95155 0.92819 0.83747 0.91394 0.90469 0.89166 0.86989 0.92277 0.92684 0.81648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 37.16 0.38 -2.37 16 2 C 0.12 2.05 6.01 -4.04 -0.02 2.02 16 3 N -0.58 -12.15 2.57 -175.23 -0.45 -12.60 16 4 C 0.25 6.38 5.19 -5.19 -0.03 6.35 16 5 C -0.52 -14.12 8.92 -34.44 -0.31 -14.43 16 6 H 0.06 1.58 7.42 -52.49 -0.39 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.43 8.84 7.37 -155.08 -1.14 7.70 16 14 C -0.19 -3.40 8.84 -38.78 -0.34 -3.74 16 15 C -0.05 -0.82 5.89 -104.69 -0.62 -1.43 16 16 C 0.58 8.45 7.73 -12.18 -0.09 8.35 16 17 O -0.51 -8.36 16.02 5.35 0.09 -8.28 16 18 N -0.48 -5.46 3.36 -67.95 -0.23 -5.69 16 19 C 0.08 0.67 10.83 59.85 0.65 1.32 16 20 O -0.13 -1.40 7.65 -11.47 -0.09 -1.49 16 21 C -0.01 -0.08 10.92 101.05 1.10 1.02 16 22 C -0.22 -3.37 8.67 -38.98 -0.34 -3.71 16 23 C 0.23 4.12 7.26 -17.52 -0.13 3.99 16 24 Cl -0.04 -0.72 29.10 -51.86 -1.51 -2.22 16 25 N -0.50 -10.82 9.10 -9.60 -0.09 -10.91 16 26 H 0.08 1.43 7.26 -51.93 -0.38 1.06 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.95 5.97 -51.93 -0.31 0.64 16 30 H 0.08 1.27 7.89 -51.93 -0.41 0.86 16 31 H 0.05 1.33 7.44 -51.93 -0.39 0.95 16 32 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.14 2.35 5.72 -52.49 -0.30 2.05 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.74 7.35 -51.93 -0.38 0.36 16 38 H 0.11 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.17 2.22 4.55 -53.75 -0.24 1.98 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -32.01 362.08 -7.39 -39.40 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.30 Total: -1.68 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.98 Total: 6.73 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.03 Total: -54.61 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.00 Total: -9.77 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.51 Total: -2.22 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.01 -7.39 -39.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.599 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds