Wall clock time and date at job start Tue Mar 31 2020 15:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47111 * 2 1 4 4 C 1.46500 * 119.99728 * 269.99683 * 3 2 1 5 5 C 1.50709 * 109.47085 * 89.99965 * 4 3 2 6 6 H 1.07992 * 119.99695 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99571 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00499 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99558 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46798 * 89.99872 * 9 7 5 11 11 H 1.48491 * 109.47204 * 209.99982 * 9 7 5 12 12 H 1.48498 * 109.47294 * 330.00294 * 9 7 5 13 13 C 1.39014 * 120.00109 * 89.99308 * 3 2 1 14 14 C 1.39088 * 119.63644 * 5.00781 * 13 3 2 15 15 C 1.39538 * 118.96206 * 179.97438 * 14 13 3 16 16 C 1.48162 * 120.87219 * 180.02562 * 15 14 13 17 17 O 1.21513 * 120.00276 * 8.11979 * 16 15 14 18 18 N 1.34776 * 120.00008 * 188.11149 * 16 15 14 19 19 C 1.46497 * 120.00064 * 186.16853 * 18 16 15 20 20 O 1.41607 * 119.99796 * 6.16859 * 18 16 15 21 21 C 1.42900 * 113.99659 * 95.45906 * 20 18 16 22 22 C 1.39955 * 118.25038 * 359.97438 * 15 14 13 23 23 C 1.38129 * 119.16499 * 0.02562 * 22 15 14 24 24 Cl 1.73600 * 119.51880 * 180.02562 * 23 22 15 25 25 N 1.32007 * 120.96430 * 359.71529 * 23 22 15 26 26 H 1.09006 * 109.46968 * 60.00721 * 1 2 3 27 27 H 1.09003 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47457 * 300.00305 * 1 2 3 29 29 H 1.08996 * 109.46967 * 119.99220 * 2 1 3 30 30 H 1.08996 * 109.47457 * 239.99695 * 2 1 3 31 31 H 1.08995 * 109.47149 * 209.99497 * 4 3 2 32 32 H 1.08997 * 109.47314 * 330.00340 * 4 3 2 33 33 H 0.97003 * 120.00182 * 180.02562 * 8 7 5 34 34 H 1.08002 * 120.51538 * 0.02562 * 14 13 3 35 35 H 1.08999 * 109.47306 * 90.00545 * 19 18 16 36 36 H 1.09001 * 109.47244 * 209.99996 * 19 18 16 37 37 H 1.08998 * 109.47188 * 330.00148 * 19 18 16 38 38 H 1.09007 * 109.46656 * 180.02562 * 21 20 18 39 39 H 1.09003 * 109.46863 * 299.99111 * 21 20 18 40 40 H 1.08995 * 109.47752 * 59.99789 * 21 20 18 41 41 H 1.07997 * 120.41689 * 180.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 1.0066 2.7822 -1.7039 6 1 0.1157 2.7247 -1.0964 7 6 0.9953 3.5055 -2.8777 8 7 2.0804 3.5760 -3.6172 9 14 -0.5616 4.3855 -3.4174 10 1 -0.5708 5.7619 -2.8597 11 1 -0.6039 4.4519 -4.9002 12 1 -1.7476 3.6424 -2.9210 13 6 2.2499 2.0367 1.2039 14 6 2.1162 1.3425 2.4017 15 6 2.3526 2.0140 3.6018 16 6 2.2230 1.3155 4.9021 17 8 2.0532 0.1127 4.9314 18 7 2.2936 2.0143 6.0524 19 6 2.3014 1.3110 7.3374 20 8 2.3603 3.4284 6.0187 21 6 1.0944 4.0737 6.1710 22 6 2.7162 3.3642 3.5449 23 6 2.8271 3.9802 2.3135 24 17 3.2783 5.6545 2.2322 25 7 2.6010 3.3126 1.1974 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.0644 2.7985 -1.1384 32 1 2.5506 1.3451 -2.0284 33 1 2.0725 4.0852 -4.4428 34 1 1.8348 0.2998 2.4028 35 1 3.3293 1.0875 7.6231 36 1 1.8415 1.9406 8.0991 37 1 1.7393 0.3816 7.2464 38 1 1.2308 5.1546 6.1338 39 1 0.4294 3.7639 5.3647 40 1 0.6574 3.7950 7.1298 41 1 2.9077 3.9176 4.4523 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:46 Heat of formation + Delta-G solvation = 14.324967 kcal Electronic energy + Delta-G solvation = -26150.108729 eV Core-core repulsion = 22286.922331 eV Total energy + Delta-G solvation = -3863.186398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.82381 -40.52295 -38.62911 -38.17245 -37.27930 -34.81640 -34.14589 -33.89014 -31.93832 -31.18276 -28.69346 -28.44534 -27.42129 -25.34335 -24.88046 -23.95084 -22.48324 -21.42842 -19.46205 -18.64332 -18.43999 -17.58677 -17.48298 -17.32915 -16.79712 -16.50222 -16.11045 -15.85238 -15.69803 -15.31692 -15.15596 -14.99666 -14.58856 -14.24351 -13.98229 -13.87689 -13.51720 -13.30030 -13.21205 -12.86556 -12.84293 -12.82015 -12.65104 -12.49076 -12.27761 -12.16279 -11.77675 -11.74341 -11.65229 -11.22659 -11.09548 -10.57405 -10.47912 -10.31472 -10.17320 -8.55182 -8.06459 -6.25808 -0.37807 0.17145 0.70406 0.81023 1.36986 1.38984 1.47866 1.61796 2.17756 2.42906 2.60990 2.81172 3.15418 3.68923 3.86917 3.94424 4.04035 4.20499 4.24878 4.39220 4.41005 4.42940 4.44909 4.55479 4.57637 4.62082 4.78263 4.85651 4.89018 4.96664 5.04698 5.13026 5.16394 5.28215 5.39940 5.45390 5.72989 6.09226 6.16568 6.18977 6.47529 6.73276 6.83646 7.13852 7.42349 8.91910 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.004128 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.563912 B = 6781.089521 C = 7903.536117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 N -0.594 5.594 4 C 0.274 3.726 5 C -0.518 4.518 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.928 5.928 9 Si 0.954 3.046 10 H -0.281 1.281 11 H -0.279 1.279 12 H -0.267 1.267 13 C 0.414 3.586 14 C -0.188 4.188 15 C -0.051 4.051 16 C 0.581 3.419 17 O -0.535 6.535 18 N -0.472 5.472 19 C 0.079 3.921 20 O -0.144 6.144 21 C -0.017 4.017 22 C -0.190 4.190 23 C 0.207 3.793 24 Cl -0.034 7.034 25 N -0.546 5.546 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.011 0.989 32 H 0.015 0.985 33 H 0.264 0.736 34 H 0.157 0.843 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.134 0.866 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 -2.428 23.068 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.005 4.005 3 N -0.303 5.303 4 C 0.153 3.847 5 C -0.557 4.557 6 H 0.067 0.933 7 C -0.187 4.187 8 N -0.569 5.569 9 Si 0.780 3.220 10 H -0.207 1.207 11 H -0.204 1.204 12 H -0.192 1.192 13 C 0.177 3.823 14 C -0.215 4.215 15 C -0.062 4.062 16 C 0.371 3.629 17 O -0.413 6.413 18 N -0.250 5.250 19 C -0.059 4.059 20 O -0.147 6.147 21 C -0.114 4.114 22 C -0.214 4.214 23 C 0.041 3.959 24 Cl -0.006 7.006 25 N -0.266 5.266 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.029 0.971 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.175 0.825 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.152 0.848 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.089 -2.466 21.925 22.090 hybrid contribution -0.860 0.770 -0.334 1.202 sum -1.950 -1.696 21.590 21.744 Atomic orbital electron populations 1.22132 0.95686 1.02627 1.01418 1.21657 0.94935 0.80458 1.03402 1.47169 1.66584 1.13466 1.03043 1.18749 0.95625 0.91181 0.79173 1.21606 0.97702 1.30664 1.05773 0.93259 1.25675 0.99140 0.97151 0.96691 1.70035 1.29292 1.42652 1.14903 0.85617 0.80123 0.78862 0.77414 1.20695 1.20412 1.19199 1.18171 0.90460 0.86628 0.87067 1.21621 1.07917 1.02128 0.89806 1.19838 0.99725 0.93731 0.92942 1.18040 0.75901 0.85805 0.83177 1.90797 1.49963 1.14208 1.86365 1.49810 1.73304 0.95050 1.06845 1.22222 1.04317 0.97527 0.81877 1.90482 1.29538 1.00146 1.94530 1.23670 0.85999 0.99562 1.02121 1.22678 1.05944 0.94572 0.98226 1.21457 0.97149 0.88094 0.89243 1.98369 1.90348 1.13216 1.98651 1.66275 1.19020 1.08962 1.32367 0.93768 0.89187 0.93760 0.88974 0.89948 0.97103 0.96725 0.92735 0.82548 0.90302 0.87416 0.89435 0.84777 0.93775 0.90329 0.79191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 10.24 71.98 0.74 -4.36 16 2 C 0.12 3.94 6.01 86.38 0.52 4.46 16 3 N -0.59 -25.58 2.57 -708.32 -1.82 -27.40 16 4 C 0.27 14.49 5.19 85.64 0.44 14.94 16 5 C -0.52 -29.22 8.92 25.60 0.23 -28.99 16 6 H 0.05 2.80 7.42 -2.91 -0.02 2.78 16 7 C 0.01 0.68 5.46 84.66 0.46 1.14 16 8 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 9 Si 0.95 45.16 29.54 68.60 2.03 47.19 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.41 17.15 7.37 133.07 0.98 18.13 16 14 C -0.19 -6.45 8.84 22.79 0.20 -6.25 16 15 C -0.05 -1.58 5.89 -19.91 -0.12 -1.69 16 16 C 0.58 15.68 7.73 86.88 0.67 16.35 16 17 O -0.54 -16.47 16.02 -3.76 -0.06 -16.53 16 18 N -0.47 -9.37 3.36 -487.17 -1.64 -11.01 16 19 C 0.08 0.98 10.83 127.77 1.38 2.37 16 20 O -0.14 -2.52 7.65 -38.80 -0.30 -2.82 16 21 C -0.02 -0.20 10.92 113.37 1.24 1.03 16 22 C -0.19 -5.67 8.67 22.66 0.20 -5.47 16 23 C 0.21 7.54 7.26 84.64 0.61 8.16 16 24 Cl -0.03 -1.12 29.10 -2.72 -0.08 -1.20 16 25 N -0.55 -24.24 9.10 -184.28 -1.68 -25.92 16 26 H 0.04 1.67 7.26 -2.38 -0.02 1.66 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 2.57 5.97 -2.39 -0.01 2.55 16 30 H 0.08 2.66 7.89 -2.39 -0.02 2.64 16 31 H 0.01 0.65 7.44 -2.39 -0.02 0.63 16 32 H 0.01 0.81 7.89 -2.39 -0.02 0.79 16 33 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.16 4.90 5.72 -2.91 -0.02 4.89 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 1.19 7.35 -2.39 -0.02 1.18 16 38 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.19 4.64 4.55 -22.96 -0.10 4.54 16 Total: -1.00 -71.43 362.08 5.27 -66.16 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 0.97 Total: 7.22 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 7.56 Total: 19.81 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -4.85 Total: -119.83 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.36 Total: -19.35 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -71.43 5.27 -66.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.485 kcal (2) G-P(sol) polarization free energy of solvation -71.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds