Wall clock time and date at job start Tue Mar 31 2020 15:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46504 * 120.00381 * 269.99975 * 3 2 1 5 5 C 1.50704 * 109.46773 * 90.00257 * 4 3 2 6 6 H 1.07998 * 119.99721 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99850 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99692 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99728 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47360 * 60.00339 * 9 7 5 11 11 H 1.48498 * 109.46962 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47440 * 300.00071 * 9 7 5 13 13 C 1.38398 * 119.99721 * 90.00416 * 3 2 1 14 14 N 1.32487 * 119.17652 * 179.97438 * 13 3 2 15 15 C 1.32549 * 120.86184 * 179.97438 * 14 13 3 16 16 Cl 1.73592 * 120.38452 * 180.02562 * 15 14 13 17 17 C 1.38444 * 119.23057 * 0.02562 * 15 14 13 18 18 C 1.39292 * 118.49785 * 359.97438 * 17 15 14 19 19 O 1.35526 * 120.45583 * 180.02562 * 18 17 15 20 20 C 1.42903 * 116.99724 * 180.02562 * 19 18 17 21 21 H 1.08999 * 110.75091 * 29.30554 * 20 19 18 22 22 C 1.55310 * 110.84725 * 152.77172 * 20 19 18 23 23 C 1.55198 * 100.82489 * 152.17786 * 22 20 19 24 24 O 1.43644 * 105.26611 * 323.81983 * 23 22 20 25 25 C 1.43244 * 109.97019 * 24.28016 * 24 23 22 26 26 N 1.32453 * 119.18100 * 359.72815 * 13 3 2 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 32 32 H 1.08992 * 109.47334 * 209.99920 * 4 3 2 33 33 H 1.08994 * 109.46680 * 330.00544 * 4 3 2 34 34 H 0.96996 * 119.99637 * 179.97438 * 8 7 5 35 35 H 1.08005 * 120.75062 * 180.02562 * 17 15 14 36 36 H 1.08999 * 111.12739 * 270.24634 * 22 20 19 37 37 H 1.09005 * 111.11829 * 34.40230 * 22 20 19 38 38 H 1.09003 * 110.36740 * 204.79773 * 23 22 20 39 39 H 1.08997 * 110.13078 * 82.71506 * 23 22 20 40 40 H 1.08992 * 109.83211 * 238.77860 * 25 24 23 41 41 H 1.08998 * 109.90109 * 117.84321 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 1.0065 2.7824 -1.7036 6 1 0.1158 2.7254 -1.0956 7 6 0.9947 3.5050 -2.8778 8 7 2.0793 3.5739 -3.6184 9 14 -0.5622 4.3850 -3.4172 10 1 -0.9549 5.3752 -2.3826 11 1 -0.3151 5.0842 -4.7038 12 1 -1.6544 3.3947 -3.5945 13 6 2.2490 2.0336 1.1986 14 7 2.6910 3.2824 1.1796 15 6 2.9226 3.9389 2.3076 16 17 3.5010 5.5751 2.2682 17 6 2.6979 3.3045 3.5174 18 6 2.2331 1.9915 3.5031 19 8 1.9993 1.3328 4.6642 20 6 1.5243 -0.0112 4.5634 21 1 1.8879 -0.4818 3.6499 22 6 1.9353 -0.8379 5.8123 23 6 0.7927 -1.8872 5.8562 24 8 -0.3849 -1.1820 5.4326 25 6 -0.0176 -0.0552 4.6281 26 7 2.0177 1.3955 2.3361 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.0642 2.7986 -1.1384 33 1 2.5505 1.3453 -2.0283 34 1 2.0709 4.0820 -4.4446 35 1 2.8780 3.8164 4.4512 36 1 2.9049 -1.3140 5.6666 37 1 1.9342 -0.2198 6.7101 38 1 0.6632 -2.2649 6.8705 39 1 1.0096 -2.7069 5.1713 40 1 -0.3950 0.8614 5.0812 41 1 -0.4267 -0.1670 3.6240 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:54 Heat of formation + Delta-G solvation = -22.673626 kcal Electronic energy + Delta-G solvation = -26179.786605 eV Core-core repulsion = 22314.995828 eV Total energy + Delta-G solvation = -3864.790777 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97563 -39.75336 -37.99130 -36.85566 -36.04076 -32.99190 -32.56858 -31.84697 -31.05771 -29.71338 -28.91353 -26.97962 -24.31598 -23.85534 -22.89597 -22.54294 -21.55416 -20.86197 -18.54247 -17.77640 -16.91066 -16.55237 -16.29376 -15.79057 -15.45557 -15.16384 -15.04721 -14.71133 -14.50375 -14.06357 -13.86169 -13.62745 -13.42602 -13.01221 -12.79892 -12.67549 -12.16617 -11.94001 -11.82809 -11.58006 -11.29573 -11.20381 -11.12966 -11.11042 -10.96455 -10.68660 -10.53630 -10.43523 -10.06882 -9.80100 -9.78828 -9.63079 -9.10175 -8.87941 -8.44815 -7.27850 -6.07057 -4.12077 1.34685 1.57926 1.81683 2.83439 3.29728 3.32538 3.34510 3.40793 3.64194 4.06979 4.22245 4.40845 4.43505 4.57372 4.73662 4.83577 4.96603 5.13285 5.26725 5.35544 5.36358 5.41531 5.45582 5.52987 5.57946 5.64652 5.72236 5.78604 5.89646 6.06474 6.18843 6.39730 6.66721 6.74664 6.84996 7.03941 7.22671 7.41271 7.61157 7.86304 8.11809 8.16337 8.67375 8.92406 9.52119 10.99962 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.004261 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.431975 B = 6569.327423 C = 8146.745027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.549 5.549 4 C 0.253 3.747 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.065 3.935 8 N -0.893 5.893 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.278 1.278 13 C 0.622 3.378 14 N -0.555 5.555 15 C 0.295 3.705 16 Cl -0.020 7.020 17 C -0.315 4.315 18 C 0.408 3.592 19 O -0.285 6.285 20 C 0.058 3.942 21 H 0.110 0.890 22 C -0.154 4.154 23 C 0.053 3.947 24 O -0.378 6.378 25 C 0.037 3.963 26 N -0.630 5.630 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.149 0.851 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -7.920 16.857 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.259 5.259 4 C 0.134 3.866 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.267 3.733 14 N -0.282 5.282 15 C 0.118 3.882 16 Cl 0.008 6.992 17 C -0.344 4.344 18 C 0.219 3.781 19 O -0.189 6.189 20 C 0.001 3.999 21 H 0.127 0.873 22 C -0.192 4.192 23 C -0.023 4.023 24 O -0.297 6.297 25 C -0.040 4.040 26 N -0.371 5.371 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.166 0.834 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.125 -8.308 15.880 17.957 hybrid contribution -0.526 1.194 0.146 1.312 sum 0.599 -7.115 16.026 17.544 Atomic orbital electron populations 1.22150 0.96149 1.00844 1.03123 1.21321 0.94567 0.81611 1.01752 1.47160 1.63130 1.12631 1.03019 1.19502 0.98006 0.92500 0.76544 1.21329 0.97251 1.31259 1.06284 0.92480 1.24872 0.96345 0.96153 0.96353 1.69908 1.27422 1.41533 1.14318 0.86611 0.83321 0.79936 0.77879 1.20222 1.21172 1.20315 1.18590 0.85629 0.83723 0.85335 1.67421 1.22733 1.08659 1.29371 1.21188 0.90422 0.88032 0.88529 1.98404 1.85981 1.16178 1.98594 1.20833 1.19357 0.95031 0.99207 1.19346 0.86464 0.87967 0.84343 1.86275 1.79320 1.27282 1.26070 1.23938 0.94112 0.81035 1.00789 0.87251 1.23426 1.00135 0.97387 0.98250 1.23365 0.83859 0.94340 1.00750 1.88446 1.29642 1.41688 1.69947 1.23537 0.93979 0.90112 0.96343 1.67433 1.32193 1.39907 0.97551 0.92804 0.93188 0.90893 0.91127 0.90684 0.92914 0.94632 0.92636 0.83360 0.88896 0.89069 0.89092 0.91625 0.90401 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.24 37.16 0.38 -2.29 16 2 C 0.13 2.21 6.17 -4.04 -0.02 2.19 16 3 N -0.55 -11.43 2.55 -177.42 -0.45 -11.88 16 4 C 0.25 6.25 5.21 -5.19 -0.03 6.22 16 5 C -0.52 -14.02 8.92 -34.44 -0.31 -14.33 16 6 H 0.06 1.56 7.42 -52.49 -0.39 1.17 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 C 0.62 12.72 8.18 -322.88 -2.64 10.08 16 14 N -0.55 -11.89 9.10 -11.09 -0.10 -11.99 16 15 C 0.30 5.33 7.33 -17.17 -0.13 5.21 16 16 Cl -0.02 -0.32 29.15 -51.86 -1.51 -1.83 16 17 C -0.31 -4.94 9.92 -39.11 -0.39 -5.33 16 18 C 0.41 6.51 7.52 -16.74 -0.13 6.38 16 19 O -0.28 -3.86 9.87 -18.27 -0.18 -4.04 16 20 C 0.06 0.67 3.25 -24.78 -0.08 0.59 16 21 H 0.11 1.34 7.08 -51.93 -0.37 0.97 16 22 C -0.15 -1.31 6.91 -24.34 -0.17 -1.47 16 23 C 0.05 0.44 7.78 38.32 0.30 0.74 16 24 O -0.38 -4.49 11.36 -35.23 -0.40 -4.89 16 25 C 0.04 0.45 7.58 37.88 0.29 0.73 16 26 N -0.63 -11.02 7.50 -14.01 -0.11 -11.13 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.37 7.26 -51.93 -0.38 0.99 16 30 H 0.07 1.07 7.34 -51.93 -0.38 0.69 16 31 H 0.07 1.20 7.89 -51.93 -0.41 0.79 16 32 H 0.05 1.44 7.33 -51.93 -0.38 1.06 16 33 H 0.04 0.90 7.89 -51.93 -0.41 0.49 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.15 1.92 8.06 -52.48 -0.42 1.49 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -29.64 361.77 -10.25 -39.89 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.65 Total: -1.60 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -3.02 Total: 10.42 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.08 Total: -59.82 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.58 Total: -8.93 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.64 -10.25 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.217 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds