Wall clock time and date at job start Tue Mar 31 2020 15:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46504 * 120.00381 * 269.99975 * 3 2 1 5 5 C 1.50704 * 109.46773 * 90.00257 * 4 3 2 6 6 H 1.07998 * 119.99721 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99850 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99692 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99728 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47360 * 60.00339 * 9 7 5 11 11 H 1.48498 * 109.46962 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47440 * 300.00071 * 9 7 5 13 13 C 1.38398 * 119.99721 * 90.00416 * 3 2 1 14 14 N 1.32487 * 119.17652 * 179.97438 * 13 3 2 15 15 C 1.32549 * 120.86184 * 179.97438 * 14 13 3 16 16 Cl 1.73592 * 120.38452 * 180.02562 * 15 14 13 17 17 C 1.38444 * 119.23057 * 0.02562 * 15 14 13 18 18 C 1.39292 * 118.49785 * 359.97438 * 17 15 14 19 19 O 1.35526 * 120.45583 * 180.02562 * 18 17 15 20 20 C 1.42903 * 116.99724 * 180.02562 * 19 18 17 21 21 H 1.08999 * 110.75091 * 29.30554 * 20 19 18 22 22 C 1.55310 * 110.84725 * 152.77172 * 20 19 18 23 23 C 1.55198 * 100.82489 * 152.17786 * 22 20 19 24 24 O 1.43644 * 105.26611 * 323.81983 * 23 22 20 25 25 C 1.43244 * 109.97019 * 24.28016 * 24 23 22 26 26 N 1.32453 * 119.18100 * 359.72815 * 13 3 2 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 32 32 H 1.08992 * 109.47334 * 209.99920 * 4 3 2 33 33 H 1.08994 * 109.46680 * 330.00544 * 4 3 2 34 34 H 0.96996 * 119.99637 * 179.97438 * 8 7 5 35 35 H 1.08005 * 120.75062 * 180.02562 * 17 15 14 36 36 H 1.08999 * 111.12739 * 270.24634 * 22 20 19 37 37 H 1.09005 * 111.11829 * 34.40230 * 22 20 19 38 38 H 1.09003 * 110.36740 * 204.79773 * 23 22 20 39 39 H 1.08997 * 110.13078 * 82.71506 * 23 22 20 40 40 H 1.08992 * 109.83211 * 238.77860 * 25 24 23 41 41 H 1.08998 * 109.90109 * 117.84321 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 1.0065 2.7824 -1.7036 6 1 0.1158 2.7254 -1.0956 7 6 0.9947 3.5050 -2.8778 8 7 2.0793 3.5739 -3.6184 9 14 -0.5622 4.3850 -3.4172 10 1 -0.9549 5.3752 -2.3826 11 1 -0.3151 5.0842 -4.7038 12 1 -1.6544 3.3947 -3.5945 13 6 2.2490 2.0336 1.1986 14 7 2.6910 3.2824 1.1796 15 6 2.9226 3.9389 2.3076 16 17 3.5010 5.5751 2.2682 17 6 2.6979 3.3045 3.5174 18 6 2.2331 1.9915 3.5031 19 8 1.9993 1.3328 4.6642 20 6 1.5243 -0.0112 4.5634 21 1 1.8879 -0.4818 3.6499 22 6 1.9353 -0.8379 5.8123 23 6 0.7927 -1.8872 5.8562 24 8 -0.3849 -1.1820 5.4326 25 6 -0.0176 -0.0552 4.6281 26 7 2.0177 1.3955 2.3361 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.0642 2.7986 -1.1384 33 1 2.5505 1.3453 -2.0283 34 1 2.0709 4.0820 -4.4446 35 1 2.8780 3.8164 4.4512 36 1 2.9049 -1.3140 5.6666 37 1 1.9342 -0.2198 6.7101 38 1 0.6632 -2.2649 6.8705 39 1 1.0096 -2.7069 5.1713 40 1 -0.3950 0.8614 5.0812 41 1 -0.4267 -0.1670 3.6240 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166593828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:54 Heat of formation + Delta-G solvation = -39.105237 kcal Electronic energy + Delta-G solvation = -26180.499134 eV Core-core repulsion = 22314.995828 eV Total energy + Delta-G solvation = -3865.503305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28935 -40.77709 -39.10041 -38.25621 -37.44600 -34.86614 -34.05990 -32.96668 -32.23363 -31.14507 -29.88573 -28.78699 -25.63142 -25.47276 -24.34117 -23.47490 -22.56918 -22.31349 -19.76654 -19.12325 -18.57188 -17.88198 -17.50454 -16.98211 -16.74448 -16.55512 -16.40995 -16.00749 -15.80751 -15.42405 -15.33845 -14.67011 -14.55256 -14.36695 -14.20379 -13.91437 -13.45315 -13.38587 -13.15278 -13.01710 -12.79781 -12.57380 -12.55718 -12.42703 -12.20743 -12.16595 -12.04331 -11.76010 -11.65949 -11.62862 -11.05650 -10.63255 -10.59812 -10.49830 -10.29248 -8.85918 -8.13847 -6.27800 -0.04706 0.21140 0.49300 1.38230 1.40399 1.47320 1.68403 1.87914 2.40823 2.74435 2.84139 3.13169 3.17647 3.33881 3.58763 3.73338 3.95896 4.01511 4.12419 4.13430 4.25287 4.30110 4.44324 4.51611 4.61688 4.65048 4.78264 4.81605 4.86126 4.88368 4.97508 5.06251 5.09334 5.29575 5.43415 5.65097 5.72389 5.87470 5.96717 6.02701 6.12857 6.53679 6.78666 7.23514 7.41488 8.89852 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.004261 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.431975 B = 6569.327423 C = 8146.745027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 N -0.563 5.563 4 C 0.275 3.725 5 C -0.524 4.524 6 H 0.047 0.953 7 C 0.018 3.982 8 N -0.924 5.924 9 Si 0.953 3.047 10 H -0.280 1.280 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.610 3.390 14 N -0.601 5.601 15 C 0.278 3.722 16 Cl -0.007 7.007 17 C -0.297 4.297 18 C 0.407 3.593 19 O -0.276 6.276 20 C 0.051 3.949 21 H 0.104 0.896 22 C -0.143 4.143 23 C 0.048 3.952 24 O -0.396 6.396 25 C 0.041 3.959 26 N -0.620 5.620 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.265 0.735 35 H 0.180 0.820 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.931 -8.937 18.963 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.007 3.993 3 N -0.274 5.274 4 C 0.154 3.846 5 C -0.563 4.563 6 H 0.066 0.934 7 C -0.182 4.182 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.206 1.206 11 H -0.205 1.205 12 H -0.192 1.192 13 C 0.254 3.746 14 N -0.330 5.330 15 C 0.104 3.896 16 Cl 0.021 6.979 17 C -0.326 4.326 18 C 0.218 3.782 19 O -0.181 6.181 20 C -0.006 4.006 21 H 0.122 0.878 22 C -0.181 4.181 23 C -0.027 4.027 24 O -0.316 6.316 25 C -0.036 4.036 26 N -0.361 5.361 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.198 0.802 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.659 -9.334 18.056 20.336 hybrid contribution -0.353 1.467 -0.322 1.543 sum 0.306 -7.867 17.734 19.403 Atomic orbital electron populations 1.22036 0.95711 1.02372 1.01000 1.21515 0.94833 0.79928 1.02983 1.46974 1.64621 1.13767 1.02081 1.18908 0.96070 0.91516 0.78129 1.21516 0.97582 1.31171 1.06060 0.93437 1.25611 0.99065 0.96946 0.96559 1.70012 1.29162 1.42469 1.14746 0.85693 0.80192 0.78869 0.77399 1.20570 1.20511 1.19227 1.18660 0.86215 0.83817 0.85909 1.67351 1.24415 1.09734 1.31466 1.21491 0.90791 0.88670 0.88622 1.98400 1.85788 1.15136 1.98567 1.21138 1.17077 0.94825 0.99524 1.19564 0.85822 0.88313 0.84526 1.86306 1.78961 1.28351 1.24432 1.24168 0.93957 0.80079 1.02361 0.87829 1.23458 1.01134 0.96815 0.96655 1.23636 0.82570 0.94219 1.02317 1.88429 1.31508 1.41745 1.69906 1.23407 0.94208 0.90202 0.95810 1.67436 1.31773 1.39574 0.97274 0.89398 0.94253 0.93851 0.89164 0.90052 0.96142 0.95837 0.92572 0.80243 0.86878 0.88500 0.86866 0.90447 0.91034 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 10.24 71.98 0.74 -4.16 16 2 C 0.13 4.33 6.17 86.38 0.53 4.86 16 3 N -0.56 -23.88 2.55 -715.25 -1.83 -25.70 16 4 C 0.27 14.06 5.21 85.63 0.45 14.51 16 5 C -0.52 -28.87 8.92 25.60 0.23 -28.64 16 6 H 0.05 2.66 7.42 -2.91 -0.02 2.64 16 7 C 0.02 0.98 5.46 84.66 0.46 1.44 16 8 N -0.92 -54.01 13.29 21.45 0.28 -53.72 16 9 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 C 0.61 25.14 8.18 261.51 2.14 27.27 16 14 N -0.60 -26.20 9.10 -189.01 -1.72 -27.92 16 15 C 0.28 9.96 7.33 84.63 0.62 10.58 16 16 Cl -0.01 -0.23 29.15 -2.72 -0.08 -0.31 16 17 C -0.30 -8.81 9.92 22.57 0.22 -8.59 16 18 C 0.41 12.33 7.52 84.80 0.64 12.97 16 19 O -0.28 -6.85 9.87 -88.29 -0.87 -7.72 16 20 C 0.05 1.07 3.25 31.86 0.10 1.17 16 21 H 0.10 2.33 7.08 -2.39 -0.02 2.31 16 22 C -0.14 -1.96 6.91 32.14 0.22 -1.74 16 23 C 0.05 0.66 7.78 72.74 0.57 1.22 16 24 O -0.40 -8.63 11.36 -148.98 -1.69 -10.32 16 25 C 0.04 0.93 7.58 72.45 0.55 1.48 16 26 N -0.62 -21.22 7.50 -310.90 -2.33 -23.56 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.63 7.26 -2.39 -0.02 1.62 16 30 H 0.09 2.63 7.34 -2.39 -0.02 2.61 16 31 H 0.08 2.57 7.89 -2.39 -0.02 2.55 16 32 H 0.02 1.17 7.33 -2.39 -0.02 1.16 16 33 H 0.02 1.25 7.89 -2.39 -0.02 1.23 16 34 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.18 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 1.68 8.05 -2.39 -0.02 1.66 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -65.12 361.77 2.30 -62.83 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.04 Total: 7.66 kcal Atomic # 6 Polarization: 24.90 SS G_CDS: 7.47 Total: 32.37 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -5.60 Total: -130.90 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -2.56 Total: -18.04 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -65.12 2.30 -62.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.721 kcal (2) G-P(sol) polarization free energy of solvation -65.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds