Wall clock time and date at job start Tue Mar 31 2020 15:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47498 * 2 1 4 4 C 1.46899 * 110.99960 * 296.34381 * 3 2 1 5 5 C 1.50693 * 109.46964 * 288.93803 * 4 3 2 6 6 H 1.08001 * 120.00187 * 4.74089 * 5 4 3 7 7 C 1.37888 * 119.99924 * 184.74439 * 5 4 3 8 8 N 1.31514 * 119.99599 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99774 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46758 * 90.00150 * 9 7 5 11 11 H 1.48496 * 109.46801 * 209.99658 * 9 7 5 12 12 H 1.48493 * 109.47450 * 330.00015 * 9 7 5 13 13 C 1.38562 * 110.99766 * 60.29563 * 3 2 1 14 14 N 1.33030 * 120.52339 * 256.77363 * 13 3 2 15 15 C 1.31742 * 120.72571 * 179.97438 * 14 13 3 16 16 N 1.31783 * 121.84442 * 359.97438 * 15 14 13 17 17 C 1.32658 * 120.98774 * 359.77828 * 16 15 14 18 18 Cl 1.73602 * 120.41822 * 180.24052 * 17 16 15 19 19 C 1.38322 * 119.16558 * 0.47744 * 17 16 15 20 20 C 1.50695 * 120.83788 * 179.78923 * 19 17 16 21 21 H 1.08999 * 109.46719 * 179.50073 * 20 19 17 22 22 C 1.52998 * 109.46943 * 299.50267 * 20 19 17 23 23 C 1.50703 * 109.47330 * 59.50322 * 20 19 17 24 24 O 1.20825 * 119.99834 * 359.97438 * 23 20 19 25 25 O 1.34221 * 120.00096 * 179.97438 * 23 20 19 26 26 C 1.45198 * 117.00169 * 179.97438 * 25 23 20 27 27 H 1.08997 * 109.47387 * 186.04450 * 1 2 3 28 28 H 1.09000 * 109.47217 * 306.05054 * 1 2 3 29 29 H 1.09001 * 109.46888 * 66.04465 * 1 2 3 30 30 H 1.09000 * 109.47234 * 239.99968 * 2 1 3 31 31 H 1.09002 * 109.46937 * 120.00261 * 2 1 3 32 32 H 1.09004 * 109.47001 * 48.93917 * 4 3 2 33 33 H 1.09002 * 109.46932 * 168.93556 * 4 3 2 34 34 H 0.97002 * 119.99662 * 180.02562 * 8 7 5 35 35 H 1.08001 * 119.07755 * 179.97438 * 15 14 13 36 36 H 1.09009 * 109.46787 * 180.02562 * 22 20 19 37 37 H 1.08997 * 109.46898 * 299.99441 * 22 20 19 38 38 H 1.08990 * 109.47507 * 60.00090 * 22 20 19 39 39 H 1.08998 * 109.47386 * 300.00183 * 26 25 23 40 40 H 1.09007 * 109.46876 * 60.00567 * 26 25 23 41 41 H 1.09001 * 109.47521 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6215 2.0842 -1.2290 5 6 2.4081 1.5403 -2.3936 6 1 3.0751 0.7030 -2.2509 7 6 2.2763 2.1118 -3.6416 8 7 1.4638 3.1312 -3.8154 9 14 3.2519 1.4381 -5.0851 10 1 2.4649 0.3761 -5.7618 11 1 3.5337 2.5341 -6.0466 12 1 4.5325 0.8686 -4.5944 13 6 1.5810 2.0668 1.1236 14 7 0.5790 2.9375 1.0371 15 6 0.1582 3.5876 2.1030 16 7 0.7042 3.4062 3.2885 17 6 1.7045 2.5512 3.4562 18 17 2.4088 2.3192 5.0259 19 6 2.1827 1.8504 2.3637 20 6 3.3205 0.8733 2.5103 21 1 3.5394 0.4227 1.5423 22 6 4.5607 1.6081 3.0231 23 6 2.9341 -0.2044 3.4903 24 8 1.8465 -0.1811 4.0160 25 8 3.7982 -1.1901 3.7790 26 6 3.3589 -2.1937 4.7319 27 1 -0.3634 -1.0219 0.1082 28 1 -0.3634 0.6048 0.8309 29 1 -0.3633 0.4173 -0.9392 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5570 1.9302 -1.4059 33 1 1.8215 3.1503 -1.1215 34 1 1.3708 3.5331 -4.6934 35 1 -0.6570 4.2888 2.0022 36 1 5.3839 0.9013 3.1288 37 1 4.8402 2.3875 2.3143 38 1 4.3418 2.0587 3.9911 39 1 3.1314 -1.7153 5.6845 40 1 2.4656 -2.6894 4.3517 41 1 4.1500 -2.9297 4.8752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:49 Heat of formation + Delta-G solvation = -21.999452 kcal Electronic energy + Delta-G solvation = -27068.482757 eV Core-core repulsion = 23203.721214 eV Total energy + Delta-G solvation = -3864.761543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41388 -40.26222 -37.68767 -36.92732 -36.43656 -34.69171 -32.97080 -32.45335 -30.40183 -29.40471 -27.82345 -26.96793 -25.36320 -23.69878 -23.55792 -22.87759 -20.59344 -20.49765 -18.25168 -17.25852 -17.15901 -16.59980 -16.37446 -16.20225 -15.54422 -14.90678 -14.77111 -14.50793 -14.15424 -13.99946 -13.90441 -13.53805 -13.30278 -12.84307 -12.70833 -12.36675 -12.18844 -12.06423 -11.92869 -11.74556 -11.52619 -11.27302 -11.17011 -10.90450 -10.82716 -10.72838 -10.52340 -10.36470 -10.28923 -10.16425 -9.93085 -9.48814 -9.19971 -9.03816 -8.53602 -7.82917 -6.10972 -4.14583 0.93927 1.20073 1.71947 2.22077 2.68306 3.26400 3.33518 3.36258 3.81949 4.02128 4.27292 4.38080 4.54399 4.73777 4.80025 4.97977 4.99220 5.06688 5.09417 5.24947 5.34601 5.41179 5.45883 5.54257 5.60817 5.73761 5.81463 5.96013 6.08096 6.13207 6.26165 6.34339 6.39773 6.60997 6.82115 7.11695 7.30730 7.58971 7.72613 7.73407 7.95925 8.25242 8.32660 8.90801 9.49207 10.99151 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.004445 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.615112 B = 6298.241430 C = 7158.706717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.067 3.933 3 N -0.477 5.477 4 C 0.199 3.801 5 C -0.519 4.519 6 H 0.064 0.936 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.398 3.602 14 N -0.535 5.535 15 C 0.332 3.668 16 N -0.544 5.544 17 C 0.257 3.743 18 Cl -0.020 7.020 19 C -0.181 4.181 20 C -0.029 4.029 21 H 0.139 0.861 22 C -0.152 4.152 23 C 0.466 3.534 24 O -0.496 6.496 25 O -0.355 6.355 26 C 0.036 3.964 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.202 0.798 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.331 -6.432 15.653 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.059 4.059 3 N -0.196 5.196 4 C 0.076 3.924 5 C -0.558 4.558 6 H 0.082 0.918 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.158 3.842 14 N -0.254 5.254 15 C 0.043 3.957 16 N -0.263 5.263 17 C 0.086 3.914 18 Cl 0.009 6.991 19 C -0.190 4.190 20 C -0.049 4.049 21 H 0.157 0.843 22 C -0.209 4.209 23 C 0.308 3.692 24 O -0.382 6.382 25 O -0.271 6.271 26 C -0.058 4.058 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.218 0.782 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.784 -5.760 15.679 16.933 hybrid contribution 0.217 -0.762 -0.502 0.938 sum 3.001 -6.522 15.177 16.789 Atomic orbital electron populations 1.22377 0.97189 1.01403 1.03101 1.22135 0.93719 0.87259 1.02779 1.59743 1.53720 1.03387 1.02708 1.19866 0.96155 0.94225 0.82161 1.21091 1.25668 1.16653 0.92377 0.91784 1.24941 0.95478 0.94888 0.98845 1.69970 1.36716 1.22708 1.23460 0.86496 0.80366 0.78518 0.82037 1.20658 1.21210 1.19727 1.20254 0.84643 0.89123 0.90169 1.68832 1.12362 1.10938 1.33222 1.24821 0.95744 0.93701 0.81480 1.67797 1.11170 1.19456 1.27876 1.21453 0.91588 0.91526 0.86877 1.98366 1.80296 1.95165 1.25317 1.20254 1.01868 1.03726 0.93141 1.19714 0.94475 0.90985 0.99759 0.84306 1.22017 0.94971 1.01254 1.02662 1.23650 0.82777 0.81678 0.81120 1.90688 1.22813 1.74843 1.49864 1.86499 1.45926 1.35692 1.59000 1.23244 1.01470 0.89688 0.91427 0.92547 0.93572 0.90561 0.87921 0.92495 0.96191 0.94110 0.92747 0.78197 0.90535 0.90372 0.91373 0.92049 0.91935 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 9.30 37.16 0.35 -2.84 16 2 C 0.07 1.18 5.39 -3.82 -0.02 1.16 16 3 N -0.48 -9.64 3.81 -174.40 -0.67 -10.30 16 4 C 0.20 4.88 3.81 -4.98 -0.02 4.86 16 5 C -0.52 -13.58 8.61 -34.44 -0.30 -13.88 16 6 H 0.06 1.62 7.30 -52.49 -0.38 1.24 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.40 7.61 4.57 -154.76 -0.71 6.90 16 14 N -0.53 -10.33 8.63 -13.83 -0.12 -10.45 16 15 C 0.33 5.47 12.28 -92.21 -1.13 4.34 16 16 N -0.54 -9.22 10.43 -11.76 -0.12 -9.34 16 17 C 0.26 4.30 6.49 -17.16 -0.11 4.19 16 18 Cl -0.02 -0.29 23.24 -51.86 -1.20 -1.50 16 19 C -0.18 -3.07 4.33 -104.11 -0.45 -3.52 16 20 C -0.03 -0.42 2.12 -92.93 -0.20 -0.62 16 21 H 0.14 2.05 5.93 -51.93 -0.31 1.74 16 22 C -0.15 -1.84 8.89 37.16 0.33 -1.51 16 23 C 0.47 6.63 6.02 36.01 0.22 6.85 16 24 O -0.50 -8.10 13.61 -18.75 -0.26 -8.36 16 25 O -0.35 -4.31 10.47 -39.23 -0.41 -4.72 16 26 C 0.04 0.32 10.56 101.05 1.07 1.39 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.84 6.67 -51.93 -0.35 0.50 16 29 H 0.08 1.48 6.57 -51.93 -0.34 1.14 16 30 H 0.10 1.85 7.04 -51.93 -0.37 1.48 16 31 H 0.06 0.90 6.27 -51.93 -0.33 0.58 16 32 H 0.02 0.53 6.06 -51.93 -0.31 0.21 16 33 H 0.04 1.12 7.76 -51.93 -0.40 0.72 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.20 2.53 8.06 -52.49 -0.42 2.11 16 36 H 0.08 0.78 8.12 -51.92 -0.42 0.36 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.82 5.12 -51.93 -0.27 0.55 16 39 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 40 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -30.65 346.07 -8.07 -38.72 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.15 Total: 0.95 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -1.07 Total: 8.88 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.17 Total: -54.79 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.67 Total: -13.07 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.20 Total: -1.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.65 -8.07 -38.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.717 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds