Wall clock time and date at job start Tue Mar 31 2020 15:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47498 * 2 1 4 4 C 1.46899 * 110.99960 * 296.34381 * 3 2 1 5 5 C 1.50693 * 109.46964 * 288.93803 * 4 3 2 6 6 H 1.08001 * 120.00187 * 4.74089 * 5 4 3 7 7 C 1.37888 * 119.99924 * 184.74439 * 5 4 3 8 8 N 1.31514 * 119.99599 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99774 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46758 * 90.00150 * 9 7 5 11 11 H 1.48496 * 109.46801 * 209.99658 * 9 7 5 12 12 H 1.48493 * 109.47450 * 330.00015 * 9 7 5 13 13 C 1.38562 * 110.99766 * 60.29563 * 3 2 1 14 14 N 1.33030 * 120.52339 * 256.77363 * 13 3 2 15 15 C 1.31742 * 120.72571 * 179.97438 * 14 13 3 16 16 N 1.31783 * 121.84442 * 359.97438 * 15 14 13 17 17 C 1.32658 * 120.98774 * 359.77828 * 16 15 14 18 18 Cl 1.73602 * 120.41822 * 180.24052 * 17 16 15 19 19 C 1.38322 * 119.16558 * 0.47744 * 17 16 15 20 20 C 1.50695 * 120.83788 * 179.78923 * 19 17 16 21 21 H 1.08999 * 109.46719 * 179.50073 * 20 19 17 22 22 C 1.52998 * 109.46943 * 299.50267 * 20 19 17 23 23 C 1.50703 * 109.47330 * 59.50322 * 20 19 17 24 24 O 1.20825 * 119.99834 * 359.97438 * 23 20 19 25 25 O 1.34221 * 120.00096 * 179.97438 * 23 20 19 26 26 C 1.45198 * 117.00169 * 179.97438 * 25 23 20 27 27 H 1.08997 * 109.47387 * 186.04450 * 1 2 3 28 28 H 1.09000 * 109.47217 * 306.05054 * 1 2 3 29 29 H 1.09001 * 109.46888 * 66.04465 * 1 2 3 30 30 H 1.09000 * 109.47234 * 239.99968 * 2 1 3 31 31 H 1.09002 * 109.46937 * 120.00261 * 2 1 3 32 32 H 1.09004 * 109.47001 * 48.93917 * 4 3 2 33 33 H 1.09002 * 109.46932 * 168.93556 * 4 3 2 34 34 H 0.97002 * 119.99662 * 180.02562 * 8 7 5 35 35 H 1.08001 * 119.07755 * 179.97438 * 15 14 13 36 36 H 1.09009 * 109.46787 * 180.02562 * 22 20 19 37 37 H 1.08997 * 109.46898 * 299.99441 * 22 20 19 38 38 H 1.08990 * 109.47507 * 60.00090 * 22 20 19 39 39 H 1.08998 * 109.47386 * 300.00183 * 26 25 23 40 40 H 1.09007 * 109.46876 * 60.00567 * 26 25 23 41 41 H 1.09001 * 109.47521 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6215 2.0842 -1.2290 5 6 2.4081 1.5403 -2.3936 6 1 3.0751 0.7030 -2.2509 7 6 2.2763 2.1118 -3.6416 8 7 1.4638 3.1312 -3.8154 9 14 3.2519 1.4381 -5.0851 10 1 2.4649 0.3761 -5.7618 11 1 3.5337 2.5341 -6.0466 12 1 4.5325 0.8686 -4.5944 13 6 1.5810 2.0668 1.1236 14 7 0.5790 2.9375 1.0371 15 6 0.1582 3.5876 2.1030 16 7 0.7042 3.4062 3.2885 17 6 1.7045 2.5512 3.4562 18 17 2.4088 2.3192 5.0259 19 6 2.1827 1.8504 2.3637 20 6 3.3205 0.8733 2.5103 21 1 3.5394 0.4227 1.5423 22 6 4.5607 1.6081 3.0231 23 6 2.9341 -0.2044 3.4903 24 8 1.8465 -0.1811 4.0160 25 8 3.7982 -1.1901 3.7790 26 6 3.3589 -2.1937 4.7319 27 1 -0.3634 -1.0219 0.1082 28 1 -0.3634 0.6048 0.8309 29 1 -0.3633 0.4173 -0.9392 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5570 1.9302 -1.4059 33 1 1.8215 3.1503 -1.1215 34 1 1.3708 3.5331 -4.6934 35 1 -0.6570 4.2888 2.0022 36 1 5.3839 0.9013 3.1288 37 1 4.8402 2.3875 2.3143 38 1 4.3418 2.0587 3.9911 39 1 3.1314 -1.7153 5.6845 40 1 2.4656 -2.6894 4.3517 41 1 4.1500 -2.9297 4.8752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166593853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:48 Heat of formation + Delta-G solvation = -39.459852 kcal Electronic energy + Delta-G solvation = -27069.239897 eV Core-core repulsion = 23203.721214 eV Total energy + Delta-G solvation = -3865.518683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.73782 -41.38092 -39.19421 -38.11880 -37.53548 -35.90646 -34.82702 -33.99795 -31.71666 -30.97498 -28.83117 -28.55286 -26.59007 -25.21533 -24.94883 -24.33996 -22.14061 -21.62041 -19.55128 -18.67628 -18.32702 -18.16092 -17.75830 -17.37459 -17.04693 -16.50043 -16.11429 -15.94002 -15.51974 -15.45758 -14.95839 -14.78996 -14.45297 -14.32022 -14.01007 -13.86647 -13.31566 -13.27207 -13.14735 -12.99183 -12.92178 -12.81168 -12.73709 -12.54153 -12.38346 -12.04582 -11.99767 -11.74506 -11.61792 -11.48085 -11.39026 -11.24894 -10.62514 -10.55305 -10.43069 -9.45212 -8.16987 -6.27745 -0.36640 -0.20292 0.44155 1.12588 1.46076 1.47154 1.58071 1.69214 2.37641 2.48840 2.65130 3.05450 3.17094 3.26368 3.40510 3.64842 3.76835 3.97498 4.00378 4.15559 4.20224 4.33829 4.36689 4.39461 4.41950 4.67054 4.73972 4.80390 4.82267 4.89329 4.98552 5.04729 5.18017 5.21406 5.33854 5.37312 5.56876 5.70080 5.95984 6.00512 6.40475 6.68351 6.82119 6.95480 7.41072 8.93955 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.004445 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.615112 B = 6298.241430 C = 7158.706717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.066 3.934 3 N -0.477 5.477 4 C 0.224 3.776 5 C -0.527 4.527 6 H 0.072 0.928 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.261 1.261 13 C 0.378 3.622 14 N -0.566 5.566 15 C 0.329 3.671 16 N -0.546 5.546 17 C 0.248 3.752 18 Cl 0.003 6.997 19 C -0.177 4.177 20 C -0.032 4.032 21 H 0.137 0.863 22 C -0.147 4.147 23 C 0.472 3.528 24 O -0.520 6.520 25 O -0.353 6.353 26 C 0.028 3.972 27 H 0.084 0.916 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.080 0.920 32 H -0.005 1.005 33 H 0.002 0.998 34 H 0.263 0.737 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 -8.101 16.720 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.059 4.059 3 N -0.195 5.195 4 C 0.099 3.901 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.185 1.185 13 C 0.139 3.861 14 N -0.285 5.285 15 C 0.041 3.959 16 N -0.265 5.265 17 C 0.077 3.923 18 Cl 0.032 6.968 19 C -0.185 4.185 20 C -0.053 4.053 21 H 0.154 0.846 22 C -0.204 4.204 23 C 0.315 3.685 24 O -0.409 6.409 25 O -0.269 6.269 26 C -0.065 4.065 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.013 0.987 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.249 0.751 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.266 -7.453 16.782 18.851 hybrid contribution -0.251 -0.273 -0.671 0.766 sum 4.015 -7.726 16.111 18.313 Atomic orbital electron populations 1.22256 0.97103 1.02610 1.01058 1.22222 0.93787 0.86182 1.03704 1.59667 1.54257 1.04097 1.01519 1.19304 0.94433 0.92350 0.83964 1.21445 1.25470 1.16637 0.92996 0.90945 1.25841 0.96423 0.95070 1.01801 1.70116 1.38508 1.24278 1.24104 0.85407 0.79239 0.77782 0.78346 1.19868 1.21385 1.18474 1.20320 0.85494 0.89693 0.90606 1.68790 1.13247 1.11750 1.34743 1.25434 0.96088 0.93602 0.80772 1.67904 1.11252 1.19454 1.27860 1.21710 0.91511 0.91245 0.87881 1.98367 1.79874 1.95023 1.23563 1.20366 1.02057 1.03930 0.92156 1.19779 0.94395 0.91019 1.00079 0.84585 1.22016 0.94562 1.01514 1.02312 1.23476 0.82515 0.81861 0.80615 1.90682 1.23800 1.75513 1.50894 1.86484 1.45277 1.35578 1.59521 1.23578 1.02879 0.89416 0.90626 0.89743 0.94739 0.93232 0.88180 0.90165 0.98690 0.97988 0.92794 0.75070 0.88177 0.90786 0.91309 0.91919 0.92122 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.04 9.30 71.98 0.67 -5.37 16 2 C 0.07 2.33 5.39 86.30 0.46 2.79 16 3 N -0.48 -19.58 3.81 -705.68 -2.69 -22.27 16 4 C 0.22 11.42 3.81 85.56 0.33 11.75 16 5 C -0.53 -27.93 8.61 25.60 0.22 -27.71 16 6 H 0.07 3.64 7.30 -2.91 -0.02 3.61 16 7 C 0.01 0.40 5.46 84.66 0.46 0.87 16 8 N -0.93 -54.56 13.29 21.45 0.28 -54.27 16 9 Si 0.97 42.26 29.54 68.60 2.03 44.29 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 13 C 0.38 14.66 4.57 133.12 0.61 15.27 16 14 N -0.57 -22.48 8.63 -197.66 -1.71 -24.18 16 15 C 0.33 10.89 12.28 180.90 2.22 13.11 16 16 N -0.55 -18.18 10.43 -191.10 -1.99 -20.18 16 17 C 0.25 8.11 6.49 84.59 0.55 8.66 16 18 Cl 0.00 0.08 23.24 -2.72 -0.06 0.02 16 19 C -0.18 -5.90 4.33 -19.54 -0.08 -5.98 16 20 C -0.03 -0.90 2.12 -12.29 -0.03 -0.92 16 21 H 0.14 3.84 5.93 -2.39 -0.01 3.83 16 22 C -0.15 -3.30 8.89 71.98 0.64 -2.66 16 23 C 0.47 12.55 6.02 71.24 0.43 12.98 16 24 O -0.52 -16.19 13.61 21.97 0.30 -15.89 16 25 O -0.35 -7.62 10.47 -51.33 -0.54 -8.16 16 26 C 0.03 0.43 10.56 113.37 1.20 1.62 16 27 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.03 1.27 6.67 -2.39 -0.02 1.26 16 29 H 0.05 1.99 6.57 -2.39 -0.02 1.98 16 30 H 0.10 3.56 7.04 -2.39 -0.02 3.54 16 31 H 0.08 2.45 6.27 -2.39 -0.01 2.43 16 32 H 0.00 -0.26 6.06 -2.39 -0.01 -0.28 16 33 H 0.00 0.11 7.76 -2.39 -0.02 0.09 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.23 5.75 8.06 -2.91 -0.02 5.73 16 36 H 0.10 1.76 8.12 -2.38 -0.02 1.74 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.52 5.12 -2.39 -0.01 1.51 16 39 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 40 H 0.06 0.96 8.13 -2.38 -0.02 0.95 16 41 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -67.01 346.07 4.36 -62.65 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.07 Total: 13.58 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 7.68 Total: 24.42 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -6.11 Total: -120.90 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.24 Total: -24.05 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -0.06 Total: 0.02 kcal Total: -67.01 4.36 -62.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.191 kcal (2) G-P(sol) polarization free energy of solvation -67.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds