Wall clock time and date at job start Tue Mar 31 2020 15:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.46863 * 2 1 4 4 C 1.34643 * 116.99559 * 179.97438 * 3 2 1 5 5 O 1.21396 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.48356 * 120.00038 * 179.72672 * 4 3 2 7 7 C 1.39144 * 120.51696 * 175.09095 * 6 4 3 8 8 C 1.39823 * 118.18429 * 179.97438 * 7 6 4 9 9 N 1.38711 * 120.50816 * 180.02562 * 8 7 6 10 10 C 1.38444 * 120.00347 * 352.94471 * 9 8 7 11 11 C 1.38944 * 120.00111 * 299.76019 * 10 9 8 12 12 H 1.08001 * 120.00132 * 156.61963 * 11 10 9 13 13 C 1.40862 * 119.99654 * 336.62364 * 11 10 9 14 14 N 1.30317 * 120.00362 * 358.21532 * 13 11 10 15 15 Si 1.86807 * 119.99791 * 178.22012 * 13 11 10 16 16 H 1.48493 * 109.47100 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47133 * 119.99778 * 15 13 11 18 18 H 1.48506 * 109.46774 * 239.99720 * 15 13 11 19 19 C 1.41137 * 120.00259 * 119.75330 * 10 9 8 20 20 C 1.43192 * 120.00037 * 174.87441 * 19 10 9 21 21 N 9.37809 * 170.53708 * 2.94597 * 2 1 3 22 22 C 1.43196 * 119.99606 * 354.88055 * 19 10 9 23 23 N 9.28317 * 145.01360 * 329.09334 * 2 1 3 24 24 N 1.32823 * 118.98210 * 0.02562 * 8 7 6 25 25 C 1.31840 * 120.92268 * 359.97438 * 24 8 7 26 26 C 1.50702 * 118.99154 * 180.02562 * 25 24 8 27 27 N 1.31552 * 122.01470 * 359.71789 * 25 24 8 28 28 H 1.08999 * 109.47371 * 300.00742 * 1 2 3 29 29 H 1.09007 * 109.46957 * 60.00029 * 1 2 3 30 30 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47145 * 239.99706 * 2 1 3 32 32 H 1.09000 * 109.46789 * 119.99628 * 2 1 3 33 33 H 1.08004 * 120.90453 * 359.97387 * 7 6 4 34 34 H 0.97002 * 120.00442 * 172.94139 * 9 8 7 35 35 H 0.97003 * 120.00522 * 185.01850 * 14 13 11 36 36 H 1.09004 * 109.46756 * 89.99927 * 26 25 24 37 37 H 1.09000 * 109.47061 * 210.00127 * 26 25 24 38 38 H 1.08992 * 109.46920 * 330.00312 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0883 0.5826 0.0005 6 6 3.9159 2.9163 -0.0056 7 6 5.2895 3.1131 0.0975 8 6 5.7712 4.4257 0.0862 9 7 7.1316 4.6774 0.1856 10 6 8.0107 3.6394 0.4432 11 6 7.8889 2.9001 1.6133 12 1 8.2863 1.8971 1.6622 13 6 7.2470 3.4589 2.7358 14 7 6.7982 4.6814 2.6883 15 14 7.0390 2.4474 4.2925 16 1 7.6301 1.1003 4.0901 17 1 7.7274 3.1263 5.4196 18 1 5.5936 2.3114 4.6050 19 6 9.0306 3.3321 -0.4827 20 6 10.0064 2.3326 -0.1674 21 7 10.7805 1.5398 0.0792 22 6 9.0896 4.0198 -1.7373 23 7 9.1356 4.5670 -2.7340 24 7 4.9061 5.4278 -0.0212 25 6 3.6114 5.1979 -0.1166 26 6 2.6687 6.3675 -0.2371 27 7 3.1177 3.9785 -0.1158 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9651 2.2749 0.1839 34 1 7.4672 5.5808 0.0745 35 1 6.4218 5.0912 3.4830 36 1 2.5239 6.6104 -1.2898 37 1 1.7096 6.1089 0.2114 38 1 3.0910 7.2292 0.2798 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080267.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:07 Heat of formation + Delta-G solvation = 22.220508 kcal Electronic energy + Delta-G solvation = -26936.714234 eV Core-core repulsion = 22972.762719 eV Total energy + Delta-G solvation = -3963.951515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.96058 -39.92777 -37.85095 -36.57785 -35.50055 -34.83035 -34.11370 -33.25176 -32.19367 -31.67616 -29.75714 -28.17824 -27.28672 -25.68459 -23.29101 -22.79926 -21.23232 -21.03183 -19.23288 -18.23063 -17.90031 -17.34973 -16.65388 -16.58137 -16.36372 -15.33052 -14.95972 -14.88821 -14.72424 -14.05663 -13.87348 -13.81475 -13.22807 -12.94155 -12.87486 -12.73554 -12.55249 -12.40918 -12.25568 -12.04196 -11.95650 -11.82821 -11.73723 -11.67933 -11.63822 -11.26350 -11.04029 -11.00728 -10.70994 -10.57954 -10.54696 -10.50372 -10.19621 -9.55471 -8.96569 -8.56089 -7.98384 -7.31340 -5.63054 0.79647 1.46702 2.06183 2.52327 2.62460 2.67498 2.72471 2.79557 3.30772 3.44671 3.75062 3.94744 4.04769 4.13339 4.19196 4.26198 4.58925 4.82889 4.87229 5.00011 5.04628 5.15880 5.22724 5.44015 5.46160 5.62551 5.65405 5.71852 5.81544 5.84526 5.96400 6.05613 6.07187 6.19840 6.36015 6.53946 6.88265 7.01141 7.21760 7.46677 7.57781 7.78588 7.97500 8.15666 8.62824 8.83285 9.00547 9.04741 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009543 B = 0.004754 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.308364 B = 5888.688621 C = 6307.729539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.333 6.333 4 C 0.527 3.473 5 O -0.488 6.488 6 C 0.155 3.845 7 C -0.205 4.205 8 C 0.486 3.514 9 N -0.617 5.617 10 C 0.369 3.631 11 C -0.372 4.372 12 H 0.118 0.882 13 C 0.066 3.934 14 N -0.720 5.720 15 Si 0.924 3.076 16 H -0.244 1.244 17 H -0.259 1.259 18 H -0.262 1.262 19 C -0.297 4.297 20 C 0.324 3.676 21 N -0.523 5.523 22 C 0.305 3.695 23 N -0.525 5.525 24 N -0.556 5.556 25 C 0.349 3.651 26 C -0.078 4.078 27 N -0.532 5.532 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.165 0.835 34 H 0.412 0.588 35 H 0.304 0.696 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.617 -0.426 4.011 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.249 6.249 4 C 0.369 3.631 5 O -0.373 6.373 6 C 0.014 3.986 7 C -0.234 4.234 8 C 0.240 3.760 9 N -0.241 5.241 10 C 0.265 3.735 11 C -0.400 4.400 12 H 0.136 0.864 13 C -0.165 4.165 14 N -0.339 5.339 15 Si 0.745 3.255 16 H -0.167 1.167 17 H -0.184 1.184 18 H -0.186 1.186 19 C -0.315 4.315 20 C 0.016 3.984 21 N -0.205 5.205 22 C -0.003 4.003 23 N -0.207 5.207 24 N -0.281 5.281 25 C 0.079 3.921 26 C -0.137 4.137 27 N -0.254 5.254 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.182 0.818 34 H 0.251 0.749 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.871 -0.373 2.881 14.173 hybrid contribution 0.397 -0.608 1.157 1.366 sum -13.475 -0.982 4.038 14.101 Atomic orbital electron populations 1.21782 0.92547 1.02725 1.03684 1.23092 0.95486 0.80340 1.02721 1.86671 1.23063 1.31700 1.83466 1.20788 0.80906 0.88460 0.72935 1.90865 1.60607 1.41189 1.44687 1.19838 0.89760 0.90572 0.98404 1.22377 0.95618 0.99091 1.06305 1.17956 0.85360 0.87793 0.84935 1.41256 1.01077 1.10855 1.70906 1.16778 0.84527 0.82657 0.89488 1.20453 1.23711 1.02555 0.93290 0.86436 1.26589 0.91427 0.95631 1.02899 1.69507 1.19725 1.12017 1.32633 0.85875 0.80012 0.81339 0.78252 1.16664 1.18368 1.18618 1.12858 1.08191 1.15433 0.95058 1.24548 0.91037 0.90926 0.91935 1.81043 1.13804 1.15314 1.10313 1.25253 0.91855 0.91580 0.91571 1.81172 1.11884 1.14846 1.12753 1.67623 1.03405 1.35414 1.21706 1.22735 0.87956 0.91605 0.89821 1.20485 0.96696 0.93084 1.03389 1.68132 1.39395 0.98598 1.19295 0.91425 0.91379 0.90351 0.91082 0.91116 0.81752 0.74912 0.88372 0.89967 0.89872 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.33 -5.02 10.08 -40.34 -0.41 -5.42 16 4 C 0.53 9.15 7.96 34.90 0.28 9.43 16 5 O -0.49 -9.12 16.22 -19.19 -0.31 -9.43 16 6 C 0.15 2.83 6.78 -82.71 -0.56 2.27 16 7 C -0.20 -3.92 8.32 -38.65 -0.32 -4.24 16 8 C 0.49 9.23 6.09 -154.68 -0.94 8.29 16 9 N -0.62 -11.69 3.30 -9.57 -0.03 -11.72 16 10 C 0.37 7.32 4.99 -83.52 -0.42 6.91 16 11 C -0.37 -7.27 6.82 -38.33 -0.26 -7.53 16 12 H 0.12 2.33 7.16 -52.49 -0.38 1.95 16 13 C 0.07 1.20 5.05 -17.20 -0.09 1.12 16 14 N -0.72 -13.26 10.76 55.60 0.60 -12.66 16 15 Si 0.92 14.72 29.57 -169.99 -5.03 9.70 16 16 H -0.24 -3.99 7.11 56.52 0.40 -3.59 16 17 H -0.26 -4.04 7.11 56.52 0.40 -3.64 16 18 H -0.26 -4.24 7.11 56.52 0.40 -3.83 16 19 C -0.30 -6.23 5.88 -104.95 -0.62 -6.85 16 20 C 0.32 7.15 13.98 -22.50 -0.31 6.83 16 21 N -0.52 -12.06 18.53 41.80 0.77 -11.28 16 22 C 0.31 6.69 14.83 -22.41 -0.33 6.36 16 23 N -0.52 -12.07 18.55 41.91 0.78 -11.30 16 24 N -0.56 -10.05 10.35 -9.94 -0.10 -10.15 16 25 C 0.35 5.75 7.64 -157.36 -1.20 4.55 16 26 C -0.08 -0.91 10.31 36.01 0.37 -0.54 16 27 N -0.53 -9.28 10.14 -7.41 -0.08 -9.35 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.16 3.25 6.05 -52.48 -0.32 2.93 16 34 H 0.41 7.59 8.94 -40.82 -0.37 7.22 16 35 H 0.30 5.16 8.29 -40.82 -0.34 4.82 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -25.64 359.55 -5.75 -31.39 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -3.57 Total: 8.18 kcal Atomic # 6 Polarization: 30.43 SS G_CDS: -3.79 Total: 26.63 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: 1.94 Total: -66.46 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.72 Total: -14.85 kcal Atomic # 14 Polarization: 14.72 SS G_CDS: -5.03 Total: 9.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -25.64 -5.75 -31.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080267.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.611 kcal (2) G-P(sol) polarization free energy of solvation -25.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds