Wall clock time and date at job start Tue Mar 31 2020 15:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.46863 * 2 1 4 4 C 1.34643 * 116.99559 * 179.97438 * 3 2 1 5 5 O 1.21396 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.48356 * 120.00038 * 179.72672 * 4 3 2 7 7 C 1.39144 * 120.51696 * 175.09095 * 6 4 3 8 8 C 1.39823 * 118.18429 * 179.97438 * 7 6 4 9 9 N 1.38711 * 120.50816 * 180.02562 * 8 7 6 10 10 C 1.38444 * 120.00347 * 352.94471 * 9 8 7 11 11 C 1.38944 * 120.00111 * 299.76019 * 10 9 8 12 12 H 1.08001 * 120.00132 * 156.61963 * 11 10 9 13 13 C 1.40862 * 119.99654 * 336.62364 * 11 10 9 14 14 N 1.30317 * 120.00362 * 358.21532 * 13 11 10 15 15 Si 1.86807 * 119.99791 * 178.22012 * 13 11 10 16 16 H 1.48493 * 109.47100 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47133 * 119.99778 * 15 13 11 18 18 H 1.48506 * 109.46774 * 239.99720 * 15 13 11 19 19 C 1.41137 * 120.00259 * 119.75330 * 10 9 8 20 20 C 1.43192 * 120.00037 * 174.87441 * 19 10 9 21 21 N 9.37809 * 170.53708 * 2.94597 * 2 1 3 22 22 C 1.43196 * 119.99606 * 354.88055 * 19 10 9 23 23 N 9.28317 * 145.01360 * 329.09334 * 2 1 3 24 24 N 1.32823 * 118.98210 * 0.02562 * 8 7 6 25 25 C 1.31840 * 120.92268 * 359.97438 * 24 8 7 26 26 C 1.50702 * 118.99154 * 180.02562 * 25 24 8 27 27 N 1.31552 * 122.01470 * 359.71789 * 25 24 8 28 28 H 1.08999 * 109.47371 * 300.00742 * 1 2 3 29 29 H 1.09007 * 109.46957 * 60.00029 * 1 2 3 30 30 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47145 * 239.99706 * 2 1 3 32 32 H 1.09000 * 109.46789 * 119.99628 * 2 1 3 33 33 H 1.08004 * 120.90453 * 359.97387 * 7 6 4 34 34 H 0.97002 * 120.00442 * 172.94139 * 9 8 7 35 35 H 0.97003 * 120.00522 * 185.01850 * 14 13 11 36 36 H 1.09004 * 109.46756 * 89.99927 * 26 25 24 37 37 H 1.09000 * 109.47061 * 210.00127 * 26 25 24 38 38 H 1.08992 * 109.46920 * 330.00312 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0883 0.5826 0.0005 6 6 3.9159 2.9163 -0.0056 7 6 5.2895 3.1131 0.0975 8 6 5.7712 4.4257 0.0862 9 7 7.1316 4.6774 0.1856 10 6 8.0107 3.6394 0.4432 11 6 7.8889 2.9001 1.6133 12 1 8.2863 1.8971 1.6622 13 6 7.2470 3.4589 2.7358 14 7 6.7982 4.6814 2.6883 15 14 7.0390 2.4474 4.2925 16 1 7.6301 1.1003 4.0901 17 1 7.7274 3.1263 5.4196 18 1 5.5936 2.3114 4.6050 19 6 9.0306 3.3321 -0.4827 20 6 10.0064 2.3326 -0.1674 21 7 10.7805 1.5398 0.0792 22 6 9.0896 4.0198 -1.7373 23 7 9.1356 4.5670 -2.7340 24 7 4.9061 5.4278 -0.0212 25 6 3.6114 5.1979 -0.1166 26 6 2.6687 6.3675 -0.2371 27 7 3.1177 3.9785 -0.1158 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9651 2.2749 0.1839 34 1 7.4672 5.5808 0.0745 35 1 6.4218 5.0912 3.4830 36 1 2.5239 6.6104 -1.2898 37 1 1.7096 6.1089 0.2114 38 1 3.0910 7.2292 0.2798 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080267.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:06 Heat of formation + Delta-G solvation = 10.112339 kcal Electronic energy + Delta-G solvation = -26937.239283 eV Core-core repulsion = 22972.762719 eV Total energy + Delta-G solvation = -3964.476565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33131 -41.23132 -39.36843 -37.82202 -37.20197 -36.58952 -35.59140 -34.60986 -33.62535 -32.52470 -31.26478 -29.39411 -28.84426 -26.99133 -24.63604 -23.83042 -22.70222 -22.29139 -20.80262 -19.64706 -19.33689 -18.88314 -17.99204 -17.84805 -17.69488 -16.80397 -16.35395 -16.22135 -16.11090 -15.31120 -15.08200 -14.99596 -14.65370 -14.44335 -14.35885 -13.96543 -13.69412 -13.60971 -13.53463 -13.48908 -13.38163 -13.16919 -13.11393 -12.99535 -12.79628 -12.77957 -12.51487 -12.40503 -12.04987 -12.03071 -11.90026 -11.59747 -11.54755 -10.94165 -10.36690 -10.09003 -9.45502 -8.81846 -7.26312 -0.61466 0.02680 0.60609 1.29238 1.30877 1.33585 1.44303 1.47232 1.91984 2.00542 2.04445 2.17855 2.47097 2.54256 2.85702 2.90083 3.30010 3.36076 3.59797 3.79401 3.88619 4.02252 4.07932 4.26647 4.36366 4.45913 4.53858 4.58649 4.78009 4.84340 4.89279 4.95099 4.95436 5.06272 5.25686 5.33377 5.34846 5.54888 5.75651 5.91446 6.06376 6.42609 6.49197 6.69219 7.09378 7.22623 7.28441 7.59647 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009543 B = 0.004754 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.308364 B = 5888.688621 C = 6307.729539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 O -0.335 6.335 4 C 0.529 3.471 5 O -0.508 6.508 6 C 0.152 3.848 7 C -0.223 4.223 8 C 0.479 3.521 9 N -0.616 5.616 10 C 0.367 3.633 11 C -0.366 4.366 12 H 0.113 0.887 13 C 0.044 3.956 14 N -0.721 5.721 15 Si 0.972 3.028 16 H -0.252 1.252 17 H -0.248 1.248 18 H -0.262 1.262 19 C -0.310 4.310 20 C 0.330 3.670 21 N -0.547 5.547 22 C 0.314 3.686 23 N -0.550 5.550 24 N -0.563 5.563 25 C 0.343 3.657 26 C -0.075 4.075 27 N -0.532 5.532 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.413 0.587 35 H 0.314 0.686 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 -0.070 5.177 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 O -0.250 6.250 4 C 0.372 3.628 5 O -0.396 6.396 6 C 0.010 3.990 7 C -0.253 4.253 8 C 0.233 3.767 9 N -0.240 5.240 10 C 0.263 3.737 11 C -0.393 4.393 12 H 0.131 0.869 13 C -0.187 4.187 14 N -0.340 5.340 15 Si 0.791 3.209 16 H -0.175 1.175 17 H -0.171 1.171 18 H -0.187 1.187 19 C -0.329 4.329 20 C 0.023 3.977 21 N -0.230 5.230 22 C 0.007 3.993 23 N -0.233 5.233 24 N -0.288 5.288 25 C 0.074 3.926 26 C -0.133 4.133 27 N -0.255 5.255 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.170 0.830 34 H 0.252 0.748 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.112 0.014 4.037 16.610 hybrid contribution 0.898 -0.706 0.865 1.433 sum -15.214 -0.693 4.902 15.999 Atomic orbital electron populations 1.21816 0.89825 1.04542 1.03799 1.23511 0.97557 0.78519 1.03084 1.86664 1.21478 1.34157 1.82731 1.20691 0.81651 0.87874 0.72613 1.90848 1.61267 1.41655 1.45789 1.20062 0.89690 0.91482 0.97722 1.22289 0.96008 0.98818 1.08143 1.18048 0.85403 0.88091 0.85141 1.41151 1.01111 1.10589 1.71165 1.16725 0.84563 0.83085 0.89350 1.20609 1.22938 1.02215 0.93583 0.86938 1.27068 0.91143 0.96275 1.04252 1.69492 1.18455 1.12351 1.33668 0.85184 0.79766 0.79899 0.76054 1.17527 1.17119 1.18656 1.12848 1.08857 1.15941 0.95219 1.24687 0.90820 0.90754 0.91452 1.81029 1.14625 1.16254 1.11058 1.25356 0.91257 0.91191 0.91480 1.81159 1.12809 1.15910 1.13412 1.67732 1.04001 1.35040 1.22049 1.23738 0.88121 0.92623 0.88083 1.20674 0.96258 0.91433 1.04902 1.68260 1.39085 0.98746 1.19384 0.91277 0.91256 0.87641 0.90802 0.90785 0.83009 0.74822 0.87315 0.88148 0.88172 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 10.29 71.98 0.74 -1.23 16 2 C 0.05 0.98 6.19 71.98 0.45 1.42 16 3 O -0.34 -9.73 10.08 -55.51 -0.56 -10.29 16 4 C 0.53 18.21 7.96 70.52 0.56 18.77 16 5 O -0.51 -19.08 16.22 20.17 0.33 -18.76 16 6 C 0.15 5.50 6.78 41.83 0.28 5.79 16 7 C -0.22 -8.60 8.32 22.87 0.19 -8.41 16 8 C 0.48 18.10 6.09 133.20 0.81 18.91 16 9 N -0.62 -23.38 3.30 -184.20 -0.61 -23.98 16 10 C 0.37 14.67 4.99 38.98 0.19 14.86 16 11 C -0.37 -14.27 6.82 23.08 0.16 -14.12 16 12 H 0.11 4.49 7.16 -2.91 -0.02 4.46 16 13 C 0.04 1.55 5.05 85.56 0.43 1.99 16 14 N -0.72 -25.63 10.76 21.98 0.24 -25.39 16 15 Si 0.97 28.88 29.57 68.60 2.03 30.91 16 16 H -0.25 -7.82 7.11 99.48 0.71 -7.12 16 17 H -0.25 -6.91 7.11 99.48 0.71 -6.20 16 18 H -0.26 -7.81 7.11 99.48 0.71 -7.11 16 19 C -0.31 -13.19 5.88 -20.08 -0.12 -13.31 16 20 C 0.33 14.76 13.98 88.34 1.24 16.00 16 21 N -0.55 -25.47 18.53 18.99 0.35 -25.12 16 22 C 0.31 13.95 14.83 88.31 1.31 15.26 16 23 N -0.55 -25.60 18.55 19.03 0.35 -25.25 16 24 N -0.56 -19.75 10.35 -185.36 -1.92 -21.67 16 25 C 0.34 10.74 7.64 138.81 1.06 11.80 16 26 C -0.07 -1.53 10.31 71.24 0.73 -0.80 16 27 N -0.53 -17.88 10.14 -177.35 -1.80 -19.68 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.95 8.14 -2.38 -0.02 0.94 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.15 6.16 6.05 -2.91 -0.02 6.15 16 34 H 0.41 15.23 8.94 -92.71 -0.83 14.40 16 35 H 0.31 10.06 8.29 -92.71 -0.77 9.29 16 36 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -54.24 359.55 6.78 -47.46 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.33 Total: 24.84 kcal Atomic # 6 Polarization: 58.90 SS G_CDS: 8.04 Total: 66.94 kcal Atomic # 7 Polarization: -137.72 SS G_CDS: -3.38 Total: -141.11 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.23 Total: -29.05 kcal Atomic # 14 Polarization: 28.88 SS G_CDS: 2.03 Total: 30.91 kcal Total: -54.24 6.78 -47.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080267.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.574 kcal (2) G-P(sol) polarization free energy of solvation -54.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds