Wall clock time and date at job start Tue Mar 31 2020 15:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.39120 * 119.99727 * 2 1 4 4 C 1.39006 * 120.52973 * 6.53501 * 3 2 1 5 5 N 1.31669 * 120.87356 * 179.97438 * 4 3 2 6 6 C 1.32407 * 122.09664 * 359.77063 * 5 4 3 7 7 N 1.39470 * 119.51964 * 180.26822 * 6 5 4 8 8 C 1.38328 * 119.99881 * 173.22267 * 7 6 5 9 9 C 1.38994 * 120.00057 * 297.97345 * 8 7 6 10 10 H 1.07995 * 120.00255 * 154.87889 * 9 8 7 11 11 C 1.40843 * 119.99890 * 334.87786 * 9 8 7 12 12 N 1.30336 * 119.99991 * 358.80876 * 11 9 8 13 13 Si 1.86798 * 119.99920 * 178.81258 * 11 9 8 14 14 H 1.48494 * 109.47167 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47199 * 120.00138 * 13 11 9 16 16 H 1.48505 * 109.46998 * 239.99895 * 13 11 9 17 17 C 1.41157 * 120.00020 * 117.97655 * 8 7 6 18 18 C 1.43197 * 119.99859 * 185.41044 * 17 8 7 19 19 N 9.16467 * 142.36854 * 348.66689 * 2 1 3 20 20 C 1.43202 * 119.99832 * 5.40134 * 17 8 7 21 21 N 8.05060 * 114.79218 * 336.69448 * 2 1 3 22 22 C 1.38736 * 120.95874 * 0.49512 * 6 5 4 23 23 C 1.39866 * 119.01440 * 359.50110 * 22 6 5 24 24 C 1.47629 * 120.94415 * 180.27102 * 23 22 6 25 25 O 1.21487 * 120.00132 * 176.94502 * 24 23 22 26 26 O 1.34727 * 120.00354 * 356.94594 * 24 23 22 27 27 C 1.45201 * 117.00285 * 180.02562 * 26 24 23 28 28 H 1.09004 * 109.47335 * 300.00061 * 1 2 3 29 29 H 1.08994 * 109.47003 * 60.00333 * 1 2 3 30 30 H 1.09007 * 109.46983 * 180.02562 * 1 2 3 31 31 H 0.96998 * 119.99945 * 179.97438 * 2 1 3 32 32 H 1.08008 * 119.56588 * 359.97438 * 4 3 2 33 33 H 0.97006 * 120.00139 * 353.22702 * 7 6 5 34 34 H 0.96996 * 119.99967 * 185.01847 * 12 11 9 35 35 H 1.07996 * 120.49864 * 179.77134 * 22 6 5 36 36 H 1.09004 * 109.46751 * 299.99219 * 27 26 24 37 37 H 1.09000 * 109.46984 * 59.99642 * 27 26 24 38 38 H 1.09004 * 109.47014 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1606 1.2048 0.0000 4 6 1.4834 2.4111 0.1363 5 7 2.1349 3.5553 0.1377 6 6 3.4520 3.6151 0.0155 7 7 4.0878 4.8564 0.0295 8 6 5.4693 4.9257 0.0440 9 6 6.1808 4.3902 1.1112 10 1 7.2030 4.0704 0.9725 11 6 5.5688 4.2646 2.3734 12 7 4.3429 4.6719 2.5467 13 14 6.5141 3.5144 3.7992 14 1 7.8759 3.1346 3.3450 15 1 6.6174 4.5051 4.9005 16 1 5.8001 2.3064 4.2855 17 6 6.1564 5.5404 -1.0250 18 6 7.5874 5.5104 -1.0678 19 7 8.7230 5.4867 -1.0996 20 6 5.4223 6.1937 -2.0666 21 7 4.8409 6.7123 -2.8915 22 6 4.2083 2.4613 -0.1310 23 6 3.5603 1.2218 -0.1378 24 6 4.3239 -0.0331 -0.2850 25 8 3.7503 -1.1028 -0.2330 26 8 5.6568 0.0078 -0.4768 27 6 6.3425 -1.2647 -0.6138 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 0.4085 2.4099 0.2424 33 1 3.5613 5.6711 0.0291 34 1 3.9460 4.6530 3.4315 35 1 5.2818 2.5189 -0.2337 36 1 6.1948 -1.8561 0.2899 37 1 5.9396 -1.8041 -1.4710 38 1 7.4078 -1.0891 -0.7634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:06 Heat of formation + Delta-G solvation = 29.511116 kcal Electronic energy + Delta-G solvation = -27330.824845 eV Core-core repulsion = 23367.189474 eV Total energy + Delta-G solvation = -3963.635371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.71169 -39.50061 -37.61997 -36.47979 -35.57534 -34.97332 -34.69489 -33.32872 -32.28913 -30.62481 -28.19830 -27.78506 -27.13076 -25.71530 -24.41726 -22.35757 -21.34587 -20.83218 -19.02422 -18.13741 -17.44655 -17.06488 -16.84571 -16.33311 -16.27346 -16.01946 -15.19562 -15.03019 -14.52549 -14.19020 -14.02071 -13.74848 -13.39149 -13.23572 -13.05041 -12.76887 -12.57258 -12.29565 -12.25545 -12.16539 -11.89758 -11.80449 -11.64964 -11.55829 -11.53127 -11.05908 -10.91284 -10.84723 -10.77157 -10.61717 -10.44014 -10.09044 -9.47025 -9.11817 -8.83002 -7.97520 -7.57104 -6.38069 -5.43659 0.98461 1.78211 2.23626 2.71663 2.76805 2.78996 2.80425 2.89605 3.41204 3.62185 3.82934 3.92497 4.08678 4.24609 4.35165 4.45229 4.83600 5.01323 5.10198 5.14128 5.18041 5.18273 5.33575 5.43871 5.47396 5.50351 5.62779 5.66373 5.99901 6.13537 6.17690 6.24694 6.34845 6.36922 6.71637 7.08356 7.26751 7.39722 7.68799 7.72980 7.77531 8.02524 8.17219 8.38224 8.83730 9.00144 9.14221 9.25293 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.005232 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.942704 B = 5350.903530 C = 5706.409161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.740 5.740 3 C 0.161 3.839 4 C 0.065 3.935 5 N -0.472 5.472 6 C 0.386 3.614 7 N -0.644 5.644 8 C 0.389 3.611 9 C -0.383 4.383 10 H 0.112 0.888 11 C 0.069 3.931 12 N -0.716 5.716 13 Si 0.922 3.078 14 H -0.247 1.247 15 H -0.262 1.262 16 H -0.264 1.264 17 C -0.307 4.307 18 C 0.326 3.674 19 N -0.532 5.532 20 C 0.311 3.689 21 N -0.532 5.532 22 C -0.115 4.115 23 C -0.140 4.140 24 C 0.528 3.472 25 O -0.526 6.526 26 O -0.342 6.342 27 C 0.037 3.963 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.413 0.587 32 H 0.155 0.845 33 H 0.405 0.595 34 H 0.300 0.700 35 H 0.156 0.844 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 -12.099 4.497 14.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.381 5.381 3 C 0.052 3.948 4 C -0.100 4.100 5 N -0.188 5.188 6 C 0.152 3.848 7 N -0.270 5.270 8 C 0.284 3.716 9 C -0.412 4.412 10 H 0.129 0.871 11 C -0.162 4.162 12 N -0.334 5.334 13 Si 0.743 3.257 14 H -0.170 1.170 15 H -0.187 1.187 16 H -0.189 1.189 17 C -0.326 4.326 18 C 0.018 3.982 19 N -0.214 5.214 20 C 0.003 3.997 21 N -0.214 5.214 22 C -0.141 4.141 23 C -0.153 4.153 24 C 0.376 3.624 25 O -0.417 6.417 26 O -0.257 6.257 27 C -0.057 4.057 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.258 0.742 32 H 0.172 0.828 33 H 0.242 0.758 34 H 0.112 0.888 35 H 0.173 0.827 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.258 -10.964 3.402 13.074 hybrid contribution 0.404 -1.358 1.110 1.800 sum -5.854 -12.322 4.512 14.369 Atomic orbital electron populations 1.21539 0.80863 1.02139 1.00948 1.44883 1.05499 1.06361 1.81312 1.18527 0.89584 0.88638 0.98060 1.21864 0.99290 0.84835 1.03969 1.66695 1.08822 1.29039 1.14215 1.17516 0.87031 0.85708 0.94511 1.41016 1.03926 1.04506 1.77549 1.16698 0.79988 0.86883 0.88055 1.20382 1.00112 1.29047 0.91619 0.87059 1.26470 0.94762 0.93122 1.01827 1.69548 1.11783 1.25428 1.26651 0.85941 0.81169 0.79668 0.78914 1.16970 1.18682 1.18861 1.13022 0.82969 1.33451 1.03148 1.24684 0.91280 0.90760 0.91507 1.81077 1.12175 1.16731 1.11450 1.25104 0.92404 0.90858 0.91315 1.81013 1.09832 1.17439 1.13099 1.21770 1.02219 0.89634 1.00468 1.18551 0.91054 0.91212 1.14529 1.21050 0.80878 0.88751 0.71715 1.90486 1.69755 1.32040 1.49411 1.86649 1.21104 1.35573 1.82345 1.23287 0.97028 0.83377 1.02037 0.93064 0.93029 0.91125 0.74230 0.82826 0.75764 0.88803 0.82662 0.91972 0.91967 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.01 59.85 0.60 1.45 16 2 N -0.74 -9.84 5.76 -65.03 -0.37 -10.21 16 3 C 0.16 2.52 6.68 -83.35 -0.56 1.96 16 4 C 0.07 1.01 10.48 -17.34 -0.18 0.83 16 5 N -0.47 -8.52 10.35 -12.23 -0.13 -8.65 16 6 C 0.39 7.30 6.31 -154.70 -0.98 6.33 16 7 N -0.64 -12.53 3.25 -9.75 -0.03 -12.56 16 8 C 0.39 7.85 4.84 -83.54 -0.40 7.45 16 9 C -0.38 -7.56 6.88 -38.32 -0.26 -7.82 16 10 H 0.11 2.22 7.08 -52.49 -0.37 1.85 16 11 C 0.07 1.29 5.24 -17.20 -0.09 1.20 16 12 N -0.72 -13.52 10.99 55.60 0.61 -12.90 16 13 Si 0.92 14.79 29.57 -169.99 -5.03 9.76 16 14 H -0.25 -4.03 7.11 56.52 0.40 -3.63 16 15 H -0.26 -4.18 7.11 56.52 0.40 -3.78 16 16 H -0.26 -4.28 7.11 56.52 0.40 -3.88 16 17 C -0.31 -6.56 5.88 -104.94 -0.62 -7.18 16 18 C 0.33 7.25 13.95 -22.46 -0.31 6.94 16 19 N -0.53 -12.33 18.54 41.85 0.78 -11.55 16 20 C 0.31 6.95 14.82 -22.52 -0.33 6.61 16 21 N -0.53 -12.46 18.53 41.79 0.77 -11.68 16 22 C -0.11 -2.10 8.46 -38.79 -0.33 -2.42 16 23 C -0.14 -2.38 5.92 -104.54 -0.62 -3.00 16 24 C 0.53 8.52 7.91 34.56 0.27 8.80 16 25 O -0.53 -8.44 13.57 -19.26 -0.26 -8.70 16 26 O -0.34 -5.13 9.92 -40.57 -0.40 -5.53 16 27 C 0.04 0.39 10.56 101.05 1.07 1.46 16 28 H 0.05 0.44 7.71 -51.93 -0.40 0.04 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.41 5.79 5.52 -40.82 -0.23 5.56 16 32 H 0.15 1.93 6.73 -52.48 -0.35 1.58 16 33 H 0.41 7.91 8.94 -40.82 -0.37 7.55 16 34 H 0.30 5.23 8.29 -40.82 -0.34 4.89 16 35 H 0.16 2.92 5.92 -52.49 -0.31 2.60 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -25.59 350.65 -4.80 -30.39 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -3.27 Total: 13.76 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: -2.75 Total: 22.60 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: 1.63 Total: -67.56 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.66 Total: -14.23 kcal Atomic # 14 Polarization: 14.79 SS G_CDS: -5.03 Total: 9.76 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -25.59 -4.80 -30.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.901 kcal (2) G-P(sol) polarization free energy of solvation -25.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds