Wall clock time and date at job start Tue Mar 31 2020 15:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.39120 * 119.99727 * 2 1 4 4 C 1.39006 * 120.52973 * 6.53501 * 3 2 1 5 5 N 1.31669 * 120.87356 * 179.97438 * 4 3 2 6 6 C 1.32407 * 122.09664 * 359.77063 * 5 4 3 7 7 N 1.39470 * 119.51964 * 180.26822 * 6 5 4 8 8 C 1.38328 * 119.99881 * 173.22267 * 7 6 5 9 9 C 1.38994 * 120.00057 * 297.97345 * 8 7 6 10 10 H 1.07995 * 120.00255 * 154.87889 * 9 8 7 11 11 C 1.40843 * 119.99890 * 334.87786 * 9 8 7 12 12 N 1.30336 * 119.99991 * 358.80876 * 11 9 8 13 13 Si 1.86798 * 119.99920 * 178.81258 * 11 9 8 14 14 H 1.48494 * 109.47167 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47199 * 120.00138 * 13 11 9 16 16 H 1.48505 * 109.46998 * 239.99895 * 13 11 9 17 17 C 1.41157 * 120.00020 * 117.97655 * 8 7 6 18 18 C 1.43197 * 119.99859 * 185.41044 * 17 8 7 19 19 N 9.16467 * 142.36854 * 348.66689 * 2 1 3 20 20 C 1.43202 * 119.99832 * 5.40134 * 17 8 7 21 21 N 8.05060 * 114.79218 * 336.69448 * 2 1 3 22 22 C 1.38736 * 120.95874 * 0.49512 * 6 5 4 23 23 C 1.39866 * 119.01440 * 359.50110 * 22 6 5 24 24 C 1.47629 * 120.94415 * 180.27102 * 23 22 6 25 25 O 1.21487 * 120.00132 * 176.94502 * 24 23 22 26 26 O 1.34727 * 120.00354 * 356.94594 * 24 23 22 27 27 C 1.45201 * 117.00285 * 180.02562 * 26 24 23 28 28 H 1.09004 * 109.47335 * 300.00061 * 1 2 3 29 29 H 1.08994 * 109.47003 * 60.00333 * 1 2 3 30 30 H 1.09007 * 109.46983 * 180.02562 * 1 2 3 31 31 H 0.96998 * 119.99945 * 179.97438 * 2 1 3 32 32 H 1.08008 * 119.56588 * 359.97438 * 4 3 2 33 33 H 0.97006 * 120.00139 * 353.22702 * 7 6 5 34 34 H 0.96996 * 119.99967 * 185.01847 * 12 11 9 35 35 H 1.07996 * 120.49864 * 179.77134 * 22 6 5 36 36 H 1.09004 * 109.46751 * 299.99219 * 27 26 24 37 37 H 1.09000 * 109.46984 * 59.99642 * 27 26 24 38 38 H 1.09004 * 109.47014 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1606 1.2048 0.0000 4 6 1.4834 2.4111 0.1363 5 7 2.1349 3.5553 0.1377 6 6 3.4520 3.6151 0.0155 7 7 4.0878 4.8564 0.0295 8 6 5.4693 4.9257 0.0440 9 6 6.1808 4.3902 1.1112 10 1 7.2030 4.0704 0.9725 11 6 5.5688 4.2646 2.3734 12 7 4.3429 4.6719 2.5467 13 14 6.5141 3.5144 3.7992 14 1 7.8759 3.1346 3.3450 15 1 6.6174 4.5051 4.9005 16 1 5.8001 2.3064 4.2855 17 6 6.1564 5.5404 -1.0250 18 6 7.5874 5.5104 -1.0678 19 7 8.7230 5.4867 -1.0996 20 6 5.4223 6.1937 -2.0666 21 7 4.8409 6.7123 -2.8915 22 6 4.2083 2.4613 -0.1310 23 6 3.5603 1.2218 -0.1378 24 6 4.3239 -0.0331 -0.2850 25 8 3.7503 -1.1028 -0.2330 26 8 5.6568 0.0078 -0.4768 27 6 6.3425 -1.2647 -0.6138 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 0.4085 2.4099 0.2424 33 1 3.5613 5.6711 0.0291 34 1 3.9460 4.6530 3.4315 35 1 5.2818 2.5189 -0.2337 36 1 6.1948 -1.8561 0.2899 37 1 5.9396 -1.8041 -1.4710 38 1 7.4078 -1.0891 -0.7634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:06 Heat of formation + Delta-G solvation = 15.837204 kcal Electronic energy + Delta-G solvation = -27331.417790 eV Core-core repulsion = 23367.189474 eV Total energy + Delta-G solvation = -3964.228316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93785 -40.76763 -39.03659 -37.73612 -37.03844 -36.51195 -36.31426 -34.79359 -33.54631 -32.13216 -29.40912 -28.81886 -28.69269 -26.76637 -25.62406 -23.74060 -22.60589 -22.19690 -20.59356 -19.44675 -18.93907 -18.35289 -18.07225 -17.76103 -17.40973 -17.30674 -16.54519 -16.24788 -15.69097 -15.35656 -15.27390 -15.10796 -14.52979 -14.40482 -14.36000 -14.30089 -14.15754 -13.83938 -13.49055 -13.35598 -13.31111 -13.26246 -13.04328 -12.99557 -12.80426 -12.65558 -12.63663 -12.10698 -11.83241 -11.81421 -11.78099 -11.50197 -10.84574 -10.44923 -10.15347 -9.47447 -8.99654 -7.69793 -7.07469 -0.30264 0.39108 0.83755 1.38624 1.49680 1.54114 1.59771 1.69974 2.07083 2.12264 2.28179 2.30903 2.58739 2.65810 2.79151 3.09426 3.46455 3.64541 3.81552 3.89617 4.06330 4.12310 4.29904 4.35989 4.50820 4.60338 4.70408 4.75093 4.75740 4.81785 4.83249 4.89180 4.99773 5.20728 5.38569 5.49209 5.76301 6.11191 6.23558 6.28675 6.57276 6.68235 6.87109 6.95844 7.21955 7.37460 7.48002 7.79755 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.005232 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.942704 B = 5350.903530 C = 5706.409161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.735 5.735 3 C 0.169 3.831 4 C 0.068 3.932 5 N -0.483 5.483 6 C 0.365 3.635 7 N -0.646 5.646 8 C 0.387 3.613 9 C -0.377 4.377 10 H 0.107 0.893 11 C 0.046 3.954 12 N -0.720 5.720 13 Si 0.973 3.027 14 H -0.252 1.252 15 H -0.255 1.255 16 H -0.263 1.263 17 C -0.322 4.322 18 C 0.331 3.669 19 N -0.555 5.555 20 C 0.318 3.682 21 N -0.558 5.558 22 C -0.126 4.126 23 C -0.157 4.157 24 C 0.527 3.473 25 O -0.530 6.530 26 O -0.356 6.356 27 C 0.028 3.972 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.411 0.589 32 H 0.187 0.813 33 H 0.401 0.599 34 H 0.309 0.691 35 H 0.143 0.857 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.481 -13.820 5.862 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.374 5.374 3 C 0.058 3.942 4 C -0.097 4.097 5 N -0.198 5.198 6 C 0.133 3.867 7 N -0.273 5.273 8 C 0.281 3.719 9 C -0.405 4.405 10 H 0.125 0.875 11 C -0.184 4.184 12 N -0.338 5.338 13 Si 0.792 3.208 14 H -0.175 1.175 15 H -0.179 1.179 16 H -0.187 1.187 17 C -0.341 4.341 18 C 0.025 3.975 19 N -0.238 5.238 20 C 0.012 3.988 21 N -0.241 5.241 22 C -0.152 4.152 23 C -0.171 4.171 24 C 0.375 3.625 25 O -0.421 6.421 26 O -0.272 6.272 27 C -0.065 4.065 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.254 0.746 32 H 0.204 0.796 33 H 0.238 0.762 34 H 0.121 0.879 35 H 0.161 0.839 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.524 -12.704 4.755 15.512 hybrid contribution 0.627 -1.012 0.773 1.420 sum -6.896 -13.717 5.528 16.318 Atomic orbital electron populations 1.21849 0.78268 1.04195 1.01973 1.45120 1.07221 1.05301 1.79716 1.18684 0.89342 0.89656 0.96530 1.22401 1.00595 0.84090 1.02646 1.66710 1.08534 1.30272 1.14325 1.17564 0.87523 0.85474 0.96117 1.40916 1.03432 1.04702 1.78217 1.16663 0.80533 0.86903 0.87754 1.20524 0.99871 1.27987 0.92071 0.87511 1.26983 0.95365 0.93248 1.02840 1.69553 1.12259 1.24358 1.27628 0.85191 0.79805 0.79054 0.76716 1.17490 1.17932 1.18723 1.13068 0.82565 1.34730 1.03723 1.24805 0.91402 0.90292 0.91020 1.81060 1.12624 1.17896 1.12209 1.25237 0.92001 0.90442 0.91080 1.80994 1.10529 1.18702 1.13919 1.21619 1.01649 0.90146 1.01772 1.18729 0.91996 0.91215 1.15168 1.20939 0.81346 0.88404 0.71841 1.90470 1.69947 1.31928 1.49800 1.86633 1.20645 1.37839 1.82033 1.23624 0.97995 0.82094 1.02749 0.91737 0.92091 0.88779 0.74559 0.79610 0.76235 0.87882 0.83925 0.91222 0.91274 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.01 127.77 1.28 2.51 16 2 N -0.74 -17.67 5.76 -359.65 -2.07 -19.74 16 3 C 0.17 5.00 6.68 38.76 0.26 5.25 16 4 C 0.07 1.99 10.48 84.90 0.89 2.88 16 5 N -0.48 -16.99 10.35 -192.62 -1.99 -18.99 16 6 C 0.36 13.80 6.31 132.80 0.84 14.64 16 7 N -0.65 -25.46 3.25 -184.76 -0.60 -26.06 16 8 C 0.39 15.86 4.84 39.02 0.19 16.05 16 9 C -0.38 -14.87 6.88 23.09 0.16 -14.71 16 10 H 0.11 4.28 7.08 -2.91 -0.02 4.26 16 11 C 0.05 1.68 5.24 85.55 0.45 2.12 16 12 N -0.72 -26.49 10.99 21.98 0.24 -26.25 16 13 Si 0.97 29.05 29.57 68.60 2.03 31.08 16 14 H -0.25 -7.71 7.11 99.48 0.71 -7.00 16 15 H -0.26 -7.35 7.11 99.48 0.71 -6.64 16 16 H -0.26 -7.79 7.11 99.48 0.71 -7.09 16 17 C -0.32 -14.02 5.88 -20.07 -0.12 -14.13 16 18 C 0.33 15.00 13.95 88.33 1.23 16.23 16 19 N -0.55 -25.98 18.54 19.01 0.35 -25.62 16 20 C 0.32 14.55 14.82 88.35 1.31 15.86 16 21 N -0.56 -26.62 18.53 18.99 0.35 -26.27 16 22 C -0.13 -4.62 8.46 22.78 0.19 -4.43 16 23 C -0.16 -5.24 5.92 -19.81 -0.12 -5.36 16 24 C 0.53 16.61 7.91 70.30 0.56 17.17 16 25 O -0.53 -16.29 13.57 19.88 0.27 -16.02 16 26 O -0.36 -10.51 9.92 -56.37 -0.56 -11.07 16 27 C 0.03 0.57 10.56 113.37 1.20 1.77 16 28 H 0.06 0.85 7.71 -2.38 -0.02 0.84 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.41 10.58 5.52 -92.71 -0.51 10.07 16 32 H 0.19 4.04 6.73 -2.91 -0.02 4.02 16 33 H 0.40 15.96 8.94 -92.70 -0.83 15.13 16 34 H 0.31 10.30 8.29 -92.71 -0.77 9.53 16 35 H 0.14 5.51 5.92 -2.91 -0.02 5.49 16 36 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -54.39 350.65 6.17 -48.22 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.16 Total: 34.87 kcal Atomic # 6 Polarization: 47.53 SS G_CDS: 8.31 Total: 55.85 kcal Atomic # 7 Polarization: -139.21 SS G_CDS: -3.72 Total: -142.93 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.29 Total: -27.09 kcal Atomic # 14 Polarization: 29.05 SS G_CDS: 2.03 Total: 31.08 kcal Total: -54.39 6.17 -48.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.059 kcal (2) G-P(sol) polarization free energy of solvation -54.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds