Wall clock time and date at job start Tue Mar 31 2020 15:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 N 1.41604 * 113.99736 * 2 1 4 4 C 1.46503 * 119.99756 * 269.99791 * 3 2 1 5 5 C 1.34771 * 119.99970 * 90.00443 * 3 2 1 6 6 O 1.21570 * 120.00068 * 179.97438 * 5 3 2 7 7 C 1.47757 * 120.00026 * 359.97438 * 5 3 2 8 8 N 1.32861 * 119.80478 * 354.38523 * 7 5 3 9 9 C 1.31358 * 121.71953 * 179.97438 * 8 7 5 10 10 C 1.38820 * 121.11628 * 359.97438 * 9 8 7 11 11 C 1.38217 * 119.47144 * 0.27845 * 10 9 8 12 12 C 1.39571 * 118.42119 * 359.44009 * 11 10 9 13 13 N 1.38996 * 120.56015 * 180.26067 * 12 11 10 14 14 C 1.38363 * 120.00370 * 6.51750 * 13 12 11 15 15 C 1.38970 * 120.00481 * 59.92619 * 14 13 12 16 16 H 1.07992 * 120.00653 * 204.60994 * 15 14 13 17 17 C 1.40854 * 119.99468 * 24.61018 * 15 14 13 18 18 N 1.30331 * 120.00211 * 5.80611 * 17 15 14 19 19 Si 1.86798 * 119.99887 * 185.80830 * 17 15 14 20 20 H 1.48495 * 109.47108 * 60.00250 * 19 17 15 21 21 H 1.48506 * 109.46982 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47255 * 299.99784 * 19 17 15 23 23 C 1.41152 * 120.00024 * 239.93349 * 14 13 12 24 24 C 1.43197 * 119.99903 * 185.15929 * 23 14 13 25 25 N 9.82496 * 106.11268 * 51.74357 * 2 1 3 26 26 C 1.43203 * 119.99925 * 5.15955 * 23 14 13 27 27 N 7.29784 * 88.32492 * 34.01174 * 2 1 3 28 28 H 1.09003 * 109.46970 * 299.99881 * 1 2 3 29 29 H 1.08999 * 109.47188 * 59.99733 * 1 2 3 30 30 H 1.08998 * 109.47345 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47244 * 270.00086 * 4 3 2 32 32 H 1.09002 * 109.47134 * 30.00615 * 4 3 2 33 33 H 1.08997 * 109.46724 * 150.00604 * 4 3 2 34 34 H 1.08004 * 119.43993 * 180.02562 * 9 8 7 35 35 H 1.07996 * 120.26250 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.79233 * 179.70127 * 11 10 9 37 37 H 0.97003 * 120.00012 * 186.51356 * 13 12 11 38 38 H 0.97002 * 120.00271 * 184.99406 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3029 1.9628 -1.2688 5 6 2.2791 1.9092 1.1672 6 8 2.7739 3.0196 1.1672 7 6 1.9782 1.2345 2.4468 8 7 1.3363 0.0712 2.4450 9 6 1.0501 -0.5614 3.5601 10 6 1.4092 -0.0375 4.7945 11 6 2.0741 1.1728 4.8522 12 6 2.3732 1.8242 3.6546 13 7 3.0453 3.0408 3.6605 14 6 3.5425 3.5508 4.8468 15 6 4.4811 2.8291 5.5743 16 1 4.5800 2.9897 6.6376 17 6 5.3035 1.8881 4.9247 18 7 5.2645 1.7743 3.6269 19 14 6.4502 0.8030 5.9232 20 1 5.6551 -0.0127 6.8759 21 1 7.2014 -0.0956 5.0101 22 1 7.4053 1.6540 6.6772 23 6 3.0961 4.8042 5.3182 24 6 3.6898 5.3828 6.4858 25 7 4.1558 5.8445 7.4120 26 6 2.0496 5.4971 4.6288 27 7 1.2157 6.0468 4.0804 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.3156 1.7108 -1.5834 32 1 1.5938 1.6336 -2.0284 33 1 2.2209 3.0418 -1.1384 34 1 0.5272 -1.5054 3.5157 35 1 1.1673 -0.5695 5.7027 36 1 2.3593 1.6023 5.8012 37 1 3.1659 3.5324 2.8330 38 1 5.7759 1.0783 3.1854 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169082807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:55 Heat of formation + Delta-G solvation = 91.822964 kcal Electronic energy + Delta-G solvation = -27903.572120 eV Core-core repulsion = 23942.638794 eV Total energy + Delta-G solvation = -3960.933326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44478 -38.72385 -37.54017 -36.94681 -35.30923 -34.70993 -33.72728 -32.76524 -31.77934 -31.31130 -28.73461 -27.22279 -27.19710 -26.08530 -23.72002 -22.84648 -21.18295 -20.37305 -18.97029 -18.17380 -17.31928 -17.27793 -16.40733 -16.19333 -15.91266 -15.62083 -15.46217 -14.50895 -14.28883 -14.06464 -13.88607 -13.69995 -13.34014 -12.96117 -12.71002 -12.61718 -12.59541 -12.47359 -12.29387 -12.15506 -11.79947 -11.70921 -11.68561 -11.66515 -11.54296 -11.13213 -10.93846 -10.88202 -10.45552 -10.18291 -10.09738 -9.77110 -9.16637 -9.02217 -8.86225 -8.25558 -7.74052 -6.80363 -5.50954 1.19936 1.78921 2.13166 2.32209 2.68385 2.73390 2.85872 3.04752 3.37252 3.81080 3.94660 4.03581 4.10119 4.21337 4.41085 4.46960 4.85565 5.12182 5.24252 5.29331 5.31686 5.41800 5.47539 5.51278 5.52262 5.56831 5.73564 5.77698 5.81259 5.92836 6.19296 6.30763 6.46618 6.54265 6.62321 6.88746 7.03575 7.25905 7.58612 7.62416 7.74665 8.09940 8.21015 8.48325 8.67567 8.94167 9.09379 9.21073 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.005516 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.432237 B = 5074.839551 C = 6016.988519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.114 6.114 3 N -0.477 5.477 4 C 0.089 3.911 5 C 0.598 3.402 6 O -0.524 6.524 7 C -0.033 4.033 8 N -0.400 5.400 9 C 0.012 3.988 10 C -0.102 4.102 11 C -0.155 4.155 12 C 0.277 3.723 13 N -0.627 5.627 14 C 0.371 3.629 15 C -0.384 4.384 16 H 0.112 0.888 17 C 0.069 3.931 18 N -0.715 5.715 19 Si 0.924 3.076 20 H -0.251 1.251 21 H -0.269 1.269 22 H -0.252 1.252 23 C -0.303 4.303 24 C 0.326 3.674 25 N -0.529 5.529 26 C 0.306 3.694 27 N -0.527 5.527 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.130 0.870 36 H 0.150 0.850 37 H 0.423 0.577 38 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 -12.794 -6.783 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.118 6.118 3 N -0.255 5.255 4 C -0.051 4.051 5 C 0.390 3.610 6 O -0.400 6.400 7 C -0.174 4.174 8 N -0.111 5.111 9 C -0.154 4.154 10 C -0.123 4.123 11 C -0.184 4.184 12 C 0.161 3.839 13 N -0.254 5.254 14 C 0.267 3.733 15 C -0.412 4.412 16 H 0.130 0.870 17 C -0.162 4.162 18 N -0.334 5.334 19 Si 0.745 3.255 20 H -0.175 1.175 21 H -0.193 1.193 22 H -0.176 1.176 23 C -0.321 4.321 24 C 0.018 3.982 25 N -0.211 5.211 26 C -0.001 4.001 27 N -0.209 5.209 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.165 0.835 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.273 0.727 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.856 -11.046 -7.263 13.771 hybrid contribution 0.717 -0.589 0.554 1.081 sum -3.138 -11.635 -6.709 13.792 Atomic orbital electron populations 1.23149 0.82240 1.03097 1.00256 1.90685 1.19695 1.04921 1.96538 1.49549 1.58993 1.11018 1.05894 1.21849 1.01311 0.98069 0.83911 1.17944 0.76950 0.83715 0.82395 1.90506 1.45728 1.18987 1.84769 1.19841 1.10832 0.95854 0.90851 1.67446 1.07657 1.04979 1.30974 1.22255 1.04636 1.00917 0.87587 1.22068 0.95836 0.95173 0.99247 1.21454 1.02318 0.96607 0.98050 1.18424 0.87092 0.85371 0.92970 1.42582 1.53213 1.18509 1.11105 1.16943 0.86915 0.87808 0.81602 1.20249 1.08952 1.13736 0.98243 0.87048 1.26489 0.97660 0.96751 0.95342 1.69508 1.29504 1.24613 1.09733 0.86000 0.79855 0.79348 0.80301 1.17455 1.19326 1.17587 1.12972 1.13356 1.00805 1.04922 1.24595 0.91169 0.91432 0.91004 1.81015 1.13985 1.11522 1.14586 1.25315 0.91145 0.91845 0.91833 1.81197 1.15420 1.11279 1.13017 0.92493 0.94561 0.88250 0.91808 0.90924 0.89536 0.83468 0.85160 0.83283 0.72673 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.56 101.05 1.07 1.19 16 2 O -0.11 -1.67 9.72 -11.47 -0.11 -1.79 16 3 N -0.48 -7.52 3.36 -68.07 -0.23 -7.75 16 4 C 0.09 1.08 10.82 59.85 0.65 1.73 16 5 C 0.60 11.24 7.72 -12.37 -0.10 11.15 16 6 O -0.52 -10.89 13.20 5.30 0.07 -10.82 16 7 C -0.03 -0.61 6.74 -82.84 -0.56 -1.17 16 8 N -0.40 -6.53 6.21 -9.67 -0.06 -6.59 16 9 C 0.01 0.17 11.17 -17.54 -0.20 -0.03 16 10 C -0.10 -1.42 10.10 -39.37 -0.40 -1.82 16 11 C -0.15 -2.63 8.79 -39.09 -0.34 -2.98 16 12 C 0.28 5.32 5.31 -83.42 -0.44 4.88 16 13 N -0.63 -13.11 3.16 -7.91 -0.02 -13.13 16 14 C 0.37 7.86 4.98 -83.54 -0.42 7.44 16 15 C -0.38 -7.71 6.73 -38.32 -0.26 -7.97 16 16 H 0.11 2.20 7.20 -52.49 -0.38 1.82 16 17 C 0.07 1.31 5.00 -17.20 -0.09 1.23 16 18 N -0.72 -14.24 11.11 55.60 0.62 -13.62 16 19 Si 0.92 14.72 29.57 -169.99 -5.03 9.69 16 20 H -0.25 -3.88 7.11 56.52 0.40 -3.48 16 21 H -0.27 -4.25 7.11 56.52 0.40 -3.85 16 22 H -0.25 -4.15 7.11 56.52 0.40 -3.75 16 23 C -0.30 -6.74 5.88 -104.94 -0.62 -7.35 16 24 C 0.33 7.45 14.00 -22.51 -0.32 7.13 16 25 N -0.53 -12.48 18.53 41.80 0.77 -11.70 16 26 C 0.31 7.18 14.83 -22.36 -0.33 6.85 16 27 N -0.53 -12.88 18.56 41.97 0.78 -12.10 16 28 H 0.06 0.75 7.09 -51.93 -0.37 0.38 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.09 7.42 -51.93 -0.39 0.71 16 34 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.15 2.53 6.32 -52.49 -0.33 2.20 16 37 H 0.42 9.48 5.34 -40.95 -0.22 9.26 16 38 H 0.30 5.64 8.29 -40.82 -0.34 5.31 16 LS Contribution 347.71 15.07 5.24 5.24 Total: -1.00 -26.98 347.71 -3.67 -30.65 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -3.35 Total: 11.63 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: -2.34 Total: 20.29 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: 1.86 Total: -64.90 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.04 Total: -12.61 kcal Atomic # 14 Polarization: 14.72 SS G_CDS: -5.03 Total: 9.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.98 -3.67 -30.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.471 kcal (2) G-P(sol) polarization free energy of solvation -26.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds