Wall clock time and date at job start Tue Mar 31 2020 15:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 N 1.41604 * 113.99736 * 2 1 4 4 C 1.46503 * 119.99756 * 269.99791 * 3 2 1 5 5 C 1.34771 * 119.99970 * 90.00443 * 3 2 1 6 6 O 1.21570 * 120.00068 * 179.97438 * 5 3 2 7 7 C 1.47757 * 120.00026 * 359.97438 * 5 3 2 8 8 N 1.32861 * 119.80478 * 354.38523 * 7 5 3 9 9 C 1.31358 * 121.71953 * 179.97438 * 8 7 5 10 10 C 1.38820 * 121.11628 * 359.97438 * 9 8 7 11 11 C 1.38217 * 119.47144 * 0.27845 * 10 9 8 12 12 C 1.39571 * 118.42119 * 359.44009 * 11 10 9 13 13 N 1.38996 * 120.56015 * 180.26067 * 12 11 10 14 14 C 1.38363 * 120.00370 * 6.51750 * 13 12 11 15 15 C 1.38970 * 120.00481 * 59.92619 * 14 13 12 16 16 H 1.07992 * 120.00653 * 204.60994 * 15 14 13 17 17 C 1.40854 * 119.99468 * 24.61018 * 15 14 13 18 18 N 1.30331 * 120.00211 * 5.80611 * 17 15 14 19 19 Si 1.86798 * 119.99887 * 185.80830 * 17 15 14 20 20 H 1.48495 * 109.47108 * 60.00250 * 19 17 15 21 21 H 1.48506 * 109.46982 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47255 * 299.99784 * 19 17 15 23 23 C 1.41152 * 120.00024 * 239.93349 * 14 13 12 24 24 C 1.43197 * 119.99903 * 185.15929 * 23 14 13 25 25 N 9.82496 * 106.11268 * 51.74357 * 2 1 3 26 26 C 1.43203 * 119.99925 * 5.15955 * 23 14 13 27 27 N 7.29784 * 88.32492 * 34.01174 * 2 1 3 28 28 H 1.09003 * 109.46970 * 299.99881 * 1 2 3 29 29 H 1.08999 * 109.47188 * 59.99733 * 1 2 3 30 30 H 1.08998 * 109.47345 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47244 * 270.00086 * 4 3 2 32 32 H 1.09002 * 109.47134 * 30.00615 * 4 3 2 33 33 H 1.08997 * 109.46724 * 150.00604 * 4 3 2 34 34 H 1.08004 * 119.43993 * 180.02562 * 9 8 7 35 35 H 1.07996 * 120.26250 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.79233 * 179.70127 * 11 10 9 37 37 H 0.97003 * 120.00012 * 186.51356 * 13 12 11 38 38 H 0.97002 * 120.00271 * 184.99406 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3029 1.9628 -1.2688 5 6 2.2791 1.9092 1.1672 6 8 2.7739 3.0196 1.1672 7 6 1.9782 1.2345 2.4468 8 7 1.3363 0.0712 2.4450 9 6 1.0501 -0.5614 3.5601 10 6 1.4092 -0.0375 4.7945 11 6 2.0741 1.1728 4.8522 12 6 2.3732 1.8242 3.6546 13 7 3.0453 3.0408 3.6605 14 6 3.5425 3.5508 4.8468 15 6 4.4811 2.8291 5.5743 16 1 4.5800 2.9897 6.6376 17 6 5.3035 1.8881 4.9247 18 7 5.2645 1.7743 3.6269 19 14 6.4502 0.8030 5.9232 20 1 5.6551 -0.0127 6.8759 21 1 7.2014 -0.0956 5.0101 22 1 7.4053 1.6540 6.6772 23 6 3.0961 4.8042 5.3182 24 6 3.6898 5.3828 6.4858 25 7 4.1558 5.8445 7.4120 26 6 2.0496 5.4971 4.6288 27 7 1.2157 6.0468 4.0804 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.3156 1.7108 -1.5834 32 1 1.5938 1.6336 -2.0284 33 1 2.2209 3.0418 -1.1384 34 1 0.5272 -1.5054 3.5157 35 1 1.1673 -0.5695 5.7027 36 1 2.3593 1.6023 5.8012 37 1 3.1659 3.5324 2.8330 38 1 5.7759 1.0783 3.1854 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:54 Heat of formation + Delta-G solvation = 77.045725 kcal Electronic energy + Delta-G solvation = -27904.212909 eV Core-core repulsion = 23942.638794 eV Total energy + Delta-G solvation = -3961.574116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75449 -40.02257 -38.97929 -38.20643 -37.04284 -36.54598 -35.21831 -33.93294 -33.04084 -32.80420 -30.11330 -28.84840 -28.28862 -27.15386 -24.97327 -24.18200 -22.67107 -21.63872 -20.61551 -19.42176 -18.91673 -18.64700 -17.78792 -17.55349 -17.07679 -17.03966 -16.64995 -15.83760 -15.47979 -15.20335 -15.14088 -15.01685 -14.66598 -14.51401 -14.37647 -13.99067 -13.85504 -13.81365 -13.53917 -13.46118 -13.43426 -13.33709 -13.23681 -13.07088 -12.76696 -12.72968 -12.66353 -12.17926 -11.81333 -11.52422 -11.46701 -10.99272 -10.39859 -10.26374 -10.06722 -9.82826 -9.19924 -8.27167 -7.19089 -0.08987 0.38446 0.93775 1.02687 1.36253 1.51460 1.55701 1.73020 2.00228 2.05960 2.17730 2.31262 2.57759 2.82808 2.91723 3.18463 3.35852 3.72319 3.79816 4.10740 4.17353 4.37008 4.38320 4.44106 4.52072 4.53606 4.63053 4.65441 4.67646 4.75540 4.80355 4.91418 5.22395 5.34345 5.37930 5.41465 5.56519 5.87881 6.02808 6.17560 6.41110 6.71006 6.79797 7.06797 7.15755 7.25231 7.30213 7.72330 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.005516 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.432237 B = 5074.839551 C = 6016.988519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.124 6.124 3 N -0.476 5.476 4 C 0.085 3.915 5 C 0.584 3.416 6 O -0.558 6.558 7 C -0.053 4.053 8 N -0.405 5.405 9 C 0.022 3.978 10 C -0.086 4.086 11 C -0.172 4.172 12 C 0.252 3.748 13 N -0.639 5.639 14 C 0.366 3.634 15 C -0.374 4.374 16 H 0.114 0.886 17 C 0.044 3.956 18 N -0.728 5.728 19 Si 0.981 3.019 20 H -0.237 1.237 21 H -0.264 1.264 22 H -0.259 1.259 23 C -0.321 4.321 24 C 0.333 3.667 25 N -0.549 5.549 26 C 0.312 3.688 27 N -0.557 5.557 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.129 0.871 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.191 0.809 35 H 0.173 0.827 36 H 0.144 0.856 37 H 0.412 0.588 38 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.972 -16.334 -6.626 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.128 6.128 3 N -0.252 5.252 4 C -0.054 4.054 5 C 0.376 3.624 6 O -0.437 6.437 7 C -0.192 4.192 8 N -0.115 5.115 9 C -0.145 4.145 10 C -0.106 4.106 11 C -0.201 4.201 12 C 0.139 3.861 13 N -0.266 5.266 14 C 0.261 3.739 15 C -0.401 4.401 16 H 0.132 0.868 17 C -0.186 4.186 18 N -0.346 5.346 19 Si 0.799 3.201 20 H -0.160 1.160 21 H -0.188 1.188 22 H -0.184 1.184 23 C -0.340 4.340 24 C 0.026 3.974 25 N -0.232 5.232 26 C 0.006 3.994 27 N -0.241 5.241 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.208 0.792 35 H 0.190 0.810 36 H 0.162 0.838 37 H 0.260 0.740 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.199 -14.621 -7.149 16.808 hybrid contribution 0.765 0.263 0.426 0.914 sum -3.434 -14.357 -6.723 16.221 Atomic orbital electron populations 1.23323 0.80450 1.04918 1.00110 1.90651 1.21531 1.04051 1.96575 1.49599 1.58271 1.11303 1.06032 1.22042 1.02718 0.97395 0.83270 1.18187 0.77027 0.83619 0.83528 1.90472 1.47445 1.20399 1.85414 1.19935 1.11821 0.96796 0.90652 1.67522 1.07617 1.04240 1.32133 1.23077 1.02862 1.01637 0.86891 1.22534 0.93350 0.93648 1.01089 1.21620 1.03461 0.97928 0.97115 1.18722 0.87903 0.85256 0.94177 1.42505 1.54457 1.19448 1.10209 1.17014 0.87203 0.87603 0.82064 1.20476 1.07926 1.13356 0.98330 0.86818 1.27162 0.98319 0.97254 0.95896 1.69565 1.29442 1.24646 1.10923 0.85169 0.77993 0.77821 0.79118 1.15983 1.18804 1.18357 1.13059 1.13928 1.01698 1.05325 1.24658 0.90820 0.91056 0.90887 1.80998 1.14866 1.12065 1.15258 1.25540 0.91028 0.91358 0.91434 1.81165 1.16603 1.12242 1.14057 0.94330 0.93002 0.85283 0.91122 0.87708 0.90549 0.79178 0.80959 0.83786 0.73985 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 10.56 113.37 1.20 1.39 16 2 O -0.12 -3.42 9.72 -38.79 -0.38 -3.80 16 3 N -0.48 -14.82 3.36 -487.55 -1.64 -16.45 16 4 C 0.09 2.03 10.82 127.77 1.38 3.41 16 5 C 0.58 22.43 7.72 86.76 0.67 23.10 16 6 O -0.56 -24.38 13.20 -3.94 -0.05 -24.43 16 7 C -0.05 -1.96 6.74 41.96 0.28 -1.67 16 8 N -0.40 -12.41 6.21 -184.50 -1.15 -13.56 16 9 C 0.02 0.53 11.17 84.90 0.95 1.48 16 10 C -0.09 -2.08 10.10 22.40 0.23 -1.85 16 11 C -0.17 -5.63 8.79 22.59 0.20 -5.43 16 12 C 0.25 9.74 5.31 38.78 0.21 9.95 16 13 N -0.64 -27.54 3.16 -178.95 -0.57 -28.11 16 14 C 0.37 15.84 4.98 39.00 0.19 16.03 16 15 C -0.37 -14.95 6.73 23.09 0.16 -14.79 16 16 H 0.11 4.44 7.20 -2.91 -0.02 4.42 16 17 C 0.04 1.63 5.00 85.56 0.43 2.05 16 18 N -0.73 -28.77 11.11 21.98 0.24 -28.53 16 19 Si 0.98 28.42 29.57 68.60 2.03 30.45 16 20 H -0.24 -6.35 7.11 99.48 0.71 -5.64 16 21 H -0.26 -7.43 7.11 99.48 0.71 -6.72 16 22 H -0.26 -7.84 7.11 99.48 0.71 -7.14 16 23 C -0.32 -14.76 5.88 -20.07 -0.12 -14.88 16 24 C 0.33 15.50 14.00 88.34 1.24 16.73 16 25 N -0.55 -26.16 18.53 18.99 0.35 -25.81 16 26 C 0.31 15.23 14.83 88.29 1.31 16.54 16 27 N -0.56 -28.30 18.56 19.05 0.35 -27.94 16 28 H 0.04 0.95 7.09 -2.39 -0.02 0.93 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.98 7.42 -2.39 -0.02 1.97 16 34 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.14 4.79 6.32 -2.91 -0.02 4.77 16 37 H 0.41 19.45 5.34 -94.87 -0.51 18.94 16 38 H 0.31 11.29 8.29 -92.71 -0.77 10.53 16 Total: -1.00 -60.64 347.71 8.17 -52.47 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.65 Total: 33.65 kcal Atomic # 6 Polarization: 43.74 SS G_CDS: 8.32 Total: 52.06 kcal Atomic # 7 Polarization: -138.00 SS G_CDS: -2.40 Total: -140.40 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.43 Total: -28.23 kcal Atomic # 14 Polarization: 28.42 SS G_CDS: 2.03 Total: 30.45 kcal Total: -60.64 8.17 -52.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.517 kcal (2) G-P(sol) polarization free energy of solvation -60.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds