Wall clock time and date at job start Tue Mar 31 2020 15:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00041 * 2 1 4 4 C 1.39915 * 119.99878 * 179.97438 * 2 1 3 5 5 C 1.38908 * 120.00028 * 179.72799 * 4 2 1 6 6 C 1.38042 * 120.00490 * 179.76524 * 5 4 2 7 7 C 1.38915 * 119.99249 * 0.52915 * 6 5 4 8 8 N 1.39989 * 119.99805 * 179.69924 * 7 6 5 9 9 C 1.38202 * 119.99789 * 352.47960 * 8 7 6 10 10 C 1.39504 * 120.00207 * 299.11882 * 9 8 7 11 11 H 1.07994 * 119.99714 * 157.17694 * 10 9 8 12 12 C 1.41825 * 120.00111 * 337.17303 * 10 9 8 13 13 N 1.29800 * 120.00127 * 1.83868 * 12 10 9 14 14 Si 1.86799 * 120.00226 * 181.83587 * 12 10 9 15 15 H 1.48503 * 109.47164 * 90.00162 * 14 12 10 16 16 H 1.48502 * 109.47331 * 210.00178 * 14 12 10 17 17 H 1.48499 * 109.47141 * 330.00496 * 14 12 10 18 18 C 1.40743 * 119.99391 * 119.11654 * 9 8 7 19 19 C 1.43200 * 119.99372 * 185.30623 * 18 9 8 20 20 N 9.16567 * 145.28527 * 172.80043 * 2 1 3 21 21 C 1.43195 * 120.00443 * 5.31080 * 18 9 8 22 22 N 8.11932 * 118.92272 * 155.88321 * 2 1 3 23 23 C 1.38875 * 120.00334 * 359.72608 * 7 6 5 24 24 N 1.48015 * 120.00320 * 180.02562 * 23 7 6 25 25 O 1.31698 * 120.00536 * 173.10966 * 24 23 7 26 26 O 1.31704 * 120.00154 * 353.10803 * 24 23 7 27 27 C 1.38076 * 119.99839 * 359.97438 * 23 7 6 28 28 H 1.08999 * 109.47222 * 270.00772 * 1 2 3 29 29 H 1.09005 * 109.47174 * 150.00120 * 1 2 3 30 30 H 1.09003 * 109.47087 * 30.00266 * 1 2 3 31 31 H 1.09001 * 109.47314 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47399 * 119.99513 * 3 2 1 33 33 H 1.09001 * 109.47218 * 239.99669 * 3 2 1 34 34 H 1.08007 * 120.00178 * 359.97438 * 5 4 2 35 35 H 1.08002 * 120.00407 * 180.25345 * 6 5 4 36 36 H 0.97003 * 119.99873 * 172.48411 * 8 7 6 37 37 H 0.97001 * 120.00444 * 185.01508 * 13 12 10 38 38 H 1.07996 * 120.00445 * 180.02562 * 27 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1646 -1.2117 0.0005 5 6 3.5536 -1.2118 -0.0052 6 6 4.2439 -2.4072 0.0003 7 6 3.5493 -3.6102 0.0003 8 7 4.2492 -4.8225 -0.0005 9 6 5.6222 -4.8276 -0.1581 10 6 6.1927 -4.3122 -1.3222 11 1 7.2178 -3.9725 -1.3165 12 6 5.4265 -4.2345 -2.5131 13 7 4.1838 -4.6095 -2.5110 14 14 6.2055 -3.5923 -4.0847 15 1 6.8040 -4.7231 -4.8385 16 1 5.1675 -2.9354 -4.9192 17 1 7.2643 -2.6077 -3.7459 18 6 6.4449 -5.3527 0.8560 19 6 7.8692 -5.2554 0.7445 20 7 8.9992 -5.1786 0.6542 21 6 5.8577 -5.9842 1.9992 22 7 5.3917 -6.4863 2.9037 23 6 2.1606 -3.6102 0.0007 24 7 1.4204 -4.8920 0.0013 25 8 0.1106 -4.8961 0.1385 26 8 2.0717 -6.0286 -0.1353 27 6 1.4702 -2.4144 0.0015 28 1 -0.3633 0.0001 1.0276 29 1 -0.3634 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 1.4892 2.0972 -0.0005 32 1 2.8241 1.3265 0.8900 33 1 2.8242 1.3264 -0.8900 34 1 4.0937 -0.2764 -0.0104 35 1 5.3239 -2.4072 0.0000 36 1 3.7705 -5.6590 0.1094 37 1 3.6805 -4.6253 -3.3400 38 1 0.3902 -2.4143 0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:32 Heat of formation + Delta-G solvation = 132.442628 kcal Electronic energy + Delta-G solvation = -27502.402986 eV Core-core repulsion = 23543.231060 eV Total energy + Delta-G solvation = -3959.171926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.30720 -38.17061 -37.78960 -35.97895 -35.10935 -34.82032 -33.99373 -33.36867 -31.57442 -30.91748 -28.71208 -28.28524 -27.23554 -25.75364 -24.53592 -22.57122 -21.39610 -20.79467 -19.18874 -18.04060 -17.63770 -17.35124 -16.93417 -16.41633 -16.02907 -15.70186 -15.41579 -15.10709 -15.01725 -14.08248 -14.04189 -13.45352 -12.99777 -12.85354 -12.79616 -12.74113 -12.63396 -12.47761 -12.40310 -12.12540 -11.96224 -11.79672 -11.65431 -11.64595 -11.26804 -11.17642 -11.01972 -10.93744 -10.70043 -10.46146 -10.42637 -10.16617 -10.08779 -9.21777 -8.89134 -8.11282 -7.69368 -6.60835 -5.58117 -0.08732 1.55907 1.67998 1.79409 2.17886 2.61456 2.69146 2.76668 3.07721 3.29644 3.68941 3.78626 3.86405 3.98418 4.10666 4.27851 4.73958 4.82876 4.98069 4.99579 5.05289 5.16727 5.23487 5.32025 5.44784 5.48264 5.52508 5.58592 5.76263 5.86327 6.05968 6.07662 6.22991 6.25172 6.35119 6.64012 6.89274 7.07022 7.16911 7.37254 7.40501 7.51613 7.61060 8.04005 8.35083 8.86513 9.02179 9.10282 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.005384 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.142610 B = 5199.380977 C = 5951.823412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.642 5.642 3 C 0.100 3.900 4 C 0.150 3.850 5 C -0.083 4.083 6 C -0.139 4.139 7 C 0.305 3.695 8 N -0.619 5.619 9 C 0.361 3.639 10 C -0.378 4.378 11 H 0.115 0.885 12 C 0.067 3.933 13 N -0.715 5.715 14 Si 0.928 3.072 15 H -0.256 1.256 16 H -0.267 1.267 17 H -0.248 1.248 18 C -0.302 4.302 19 C 0.325 3.675 20 N -0.527 5.527 21 C 0.304 3.696 22 N -0.522 5.522 23 C -0.039 4.039 24 N 0.023 4.977 25 O -0.225 6.225 26 O -0.214 6.214 27 C -0.112 4.112 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.420 0.580 37 H 0.304 0.696 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 14.527 -4.945 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.358 5.358 3 C -0.043 4.043 4 C 0.049 3.951 5 C -0.106 4.106 6 C -0.162 4.162 7 C 0.190 3.810 8 N -0.253 5.253 9 C 0.258 3.742 10 C -0.405 4.405 11 H 0.133 0.867 12 C -0.165 4.165 13 N -0.334 5.334 14 Si 0.749 3.251 15 H -0.180 1.180 16 H -0.192 1.192 17 H -0.171 1.171 18 C -0.320 4.320 19 C 0.017 3.983 20 N -0.209 5.209 21 C -0.004 4.004 22 N -0.204 5.204 23 C -0.136 4.136 24 N 0.480 4.520 25 O -0.405 6.405 26 O -0.387 6.387 27 C -0.137 4.137 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.272 0.728 37 H 0.117 0.883 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.081 14.342 -3.803 16.035 hybrid contribution -0.616 -0.407 -1.153 1.369 sum -6.697 13.935 -4.956 16.236 Atomic orbital electron populations 1.21620 0.79671 1.02458 1.01028 1.46018 1.04573 1.02404 1.82807 1.21545 0.96936 0.84757 1.01067 1.17150 0.90649 0.85092 1.02199 1.20917 0.91835 0.98665 0.99167 1.20906 1.01630 0.88891 1.04745 1.17260 0.87151 0.87944 0.88679 1.42974 1.06124 1.07266 1.68889 1.16933 0.79971 0.87895 0.89442 1.20668 0.99806 1.28819 0.91228 0.86728 1.26668 0.94195 0.92748 1.02890 1.69318 1.08081 1.23763 1.32209 0.85876 0.80203 0.80664 0.78312 1.18019 1.19176 1.17057 1.12797 0.83843 1.35581 0.99791 1.24623 0.91170 0.90832 0.91699 1.81084 1.12018 1.16914 1.10890 1.25122 0.92732 0.91051 0.91516 1.81035 1.08993 1.17228 1.13126 1.19246 0.88841 0.81461 1.24069 1.50117 1.02667 1.03696 0.95552 1.96188 0.90302 1.96074 1.57968 1.95938 1.67185 1.17375 1.58249 1.19922 1.00606 0.88284 1.04854 0.93571 0.91428 0.91772 0.91090 0.92898 0.92984 0.84614 0.82418 0.72781 0.88295 0.83828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 10.16 59.85 0.61 1.41 16 2 N -0.64 -6.61 3.42 -187.48 -0.64 -7.25 16 3 C 0.10 0.74 9.40 59.85 0.56 1.30 16 4 C 0.15 1.96 6.56 -83.68 -0.55 1.41 16 5 C -0.08 -1.06 9.31 -39.41 -0.37 -1.42 16 6 C -0.14 -2.15 8.73 -39.40 -0.34 -2.49 16 7 C 0.30 5.51 4.91 -83.65 -0.41 5.10 16 8 N -0.62 -12.32 3.15 -8.14 -0.03 -12.34 16 9 C 0.36 7.20 4.95 -83.57 -0.41 6.79 16 10 C -0.38 -7.08 7.00 -37.74 -0.26 -7.34 16 11 H 0.11 2.12 7.05 -52.49 -0.37 1.75 16 12 C 0.07 1.18 5.17 -17.04 -0.09 1.10 16 13 N -0.72 -13.35 10.58 55.65 0.59 -12.76 16 14 Si 0.93 13.80 29.58 -169.99 -5.03 8.78 16 15 H -0.26 -3.96 7.11 56.52 0.40 -3.56 16 16 H -0.27 -3.94 7.11 56.52 0.40 -3.54 16 17 H -0.25 -3.64 7.11 56.52 0.40 -3.24 16 18 C -0.30 -6.40 5.87 -105.10 -0.62 -7.01 16 19 C 0.33 7.06 13.91 -22.47 -0.31 6.75 16 20 N -0.53 -11.89 18.54 41.84 0.78 -11.11 16 21 C 0.30 6.89 14.80 -22.52 -0.33 6.56 16 22 N -0.52 -12.50 18.53 41.78 0.77 -11.72 16 23 C -0.04 -0.71 6.89 -79.77 -0.55 -1.26 16 24 N 0.02 0.47 4.98 34.05 0.17 0.64 16 25 O -0.23 -4.64 19.17 -31.57 -0.61 -5.24 16 26 O -0.21 -4.75 16.33 -31.57 -0.52 -5.26 16 27 C -0.11 -1.70 8.74 -39.41 -0.34 -2.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.61 6.20 -51.93 -0.32 0.29 16 30 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 31 H 0.07 0.39 7.79 -51.93 -0.40 -0.02 16 32 H 0.05 0.37 7.96 -51.93 -0.41 -0.04 16 33 H 0.05 0.37 7.94 -51.93 -0.41 -0.05 16 34 H 0.14 1.32 6.73 -52.48 -0.35 0.97 16 35 H 0.16 2.39 6.28 -52.49 -0.33 2.06 16 36 H 0.42 9.05 5.16 -41.46 -0.21 8.83 16 37 H 0.30 5.31 8.28 -40.82 -0.34 4.97 16 38 H 0.14 2.03 5.67 -52.49 -0.30 1.74 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -26.31 347.12 -5.78 -32.09 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -3.08 Total: 10.11 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -3.42 Total: 8.84 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 1.64 Total: -54.54 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.12 Total: -10.50 kcal Atomic # 14 Polarization: 13.80 SS G_CDS: -5.03 Total: 8.78 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.31 -5.78 -32.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.529 kcal (2) G-P(sol) polarization free energy of solvation -26.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds