Wall clock time and date at job start Tue Mar 31 2020 15:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00041 * 2 1 4 4 C 1.39915 * 119.99878 * 179.97438 * 2 1 3 5 5 C 1.38908 * 120.00028 * 179.72799 * 4 2 1 6 6 C 1.38042 * 120.00490 * 179.76524 * 5 4 2 7 7 C 1.38915 * 119.99249 * 0.52915 * 6 5 4 8 8 N 1.39989 * 119.99805 * 179.69924 * 7 6 5 9 9 C 1.38202 * 119.99789 * 352.47960 * 8 7 6 10 10 C 1.39504 * 120.00207 * 299.11882 * 9 8 7 11 11 H 1.07994 * 119.99714 * 157.17694 * 10 9 8 12 12 C 1.41825 * 120.00111 * 337.17303 * 10 9 8 13 13 N 1.29800 * 120.00127 * 1.83868 * 12 10 9 14 14 Si 1.86799 * 120.00226 * 181.83587 * 12 10 9 15 15 H 1.48503 * 109.47164 * 90.00162 * 14 12 10 16 16 H 1.48502 * 109.47331 * 210.00178 * 14 12 10 17 17 H 1.48499 * 109.47141 * 330.00496 * 14 12 10 18 18 C 1.40743 * 119.99391 * 119.11654 * 9 8 7 19 19 C 1.43200 * 119.99372 * 185.30623 * 18 9 8 20 20 N 9.16567 * 145.28527 * 172.80043 * 2 1 3 21 21 C 1.43195 * 120.00443 * 5.31080 * 18 9 8 22 22 N 8.11932 * 118.92272 * 155.88321 * 2 1 3 23 23 C 1.38875 * 120.00334 * 359.72608 * 7 6 5 24 24 N 1.48015 * 120.00320 * 180.02562 * 23 7 6 25 25 O 1.31698 * 120.00536 * 173.10966 * 24 23 7 26 26 O 1.31704 * 120.00154 * 353.10803 * 24 23 7 27 27 C 1.38076 * 119.99839 * 359.97438 * 23 7 6 28 28 H 1.08999 * 109.47222 * 270.00772 * 1 2 3 29 29 H 1.09005 * 109.47174 * 150.00120 * 1 2 3 30 30 H 1.09003 * 109.47087 * 30.00266 * 1 2 3 31 31 H 1.09001 * 109.47314 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47399 * 119.99513 * 3 2 1 33 33 H 1.09001 * 109.47218 * 239.99669 * 3 2 1 34 34 H 1.08007 * 120.00178 * 359.97438 * 5 4 2 35 35 H 1.08002 * 120.00407 * 180.25345 * 6 5 4 36 36 H 0.97003 * 119.99873 * 172.48411 * 8 7 6 37 37 H 0.97001 * 120.00444 * 185.01508 * 13 12 10 38 38 H 1.07996 * 120.00445 * 180.02562 * 27 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1646 -1.2117 0.0005 5 6 3.5536 -1.2118 -0.0052 6 6 4.2439 -2.4072 0.0003 7 6 3.5493 -3.6102 0.0003 8 7 4.2492 -4.8225 -0.0005 9 6 5.6222 -4.8276 -0.1581 10 6 6.1927 -4.3122 -1.3222 11 1 7.2178 -3.9725 -1.3165 12 6 5.4265 -4.2345 -2.5131 13 7 4.1838 -4.6095 -2.5110 14 14 6.2055 -3.5923 -4.0847 15 1 6.8040 -4.7231 -4.8385 16 1 5.1675 -2.9354 -4.9192 17 1 7.2643 -2.6077 -3.7459 18 6 6.4449 -5.3527 0.8560 19 6 7.8692 -5.2554 0.7445 20 7 8.9992 -5.1786 0.6542 21 6 5.8577 -5.9842 1.9992 22 7 5.3917 -6.4863 2.9037 23 6 2.1606 -3.6102 0.0007 24 7 1.4204 -4.8920 0.0013 25 8 0.1106 -4.8961 0.1385 26 8 2.0717 -6.0286 -0.1353 27 6 1.4702 -2.4144 0.0015 28 1 -0.3633 0.0001 1.0276 29 1 -0.3634 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 1.4892 2.0972 -0.0005 32 1 2.8241 1.3265 0.8900 33 1 2.8242 1.3264 -0.8900 34 1 4.0937 -0.2764 -0.0104 35 1 5.3239 -2.4072 0.0000 36 1 3.7705 -5.6590 0.1094 37 1 3.6805 -4.6253 -3.3400 38 1 0.3902 -2.4143 0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:31 Heat of formation + Delta-G solvation = 119.611168 kcal Electronic energy + Delta-G solvation = -27502.959400 eV Core-core repulsion = 23543.231060 eV Total energy + Delta-G solvation = -3959.728339 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59021 -39.40595 -39.27666 -37.42843 -36.62647 -36.44307 -35.48189 -34.83923 -32.82996 -32.31004 -29.86786 -29.15011 -28.80410 -27.07725 -25.54443 -23.85551 -22.79152 -22.00996 -20.73536 -19.36158 -19.05882 -18.87479 -18.29874 -17.77360 -17.26620 -16.91051 -16.80468 -16.20321 -15.85169 -15.32801 -15.28612 -14.63650 -14.57116 -14.43721 -14.04219 -13.95250 -13.85775 -13.48054 -13.45334 -13.37347 -13.36200 -13.15178 -13.06674 -12.89442 -12.73509 -12.71840 -12.29744 -12.21504 -12.10912 -11.89755 -11.80837 -11.69710 -11.49123 -10.47447 -10.15925 -9.50518 -9.04508 -7.79222 -7.19266 -1.60148 0.26649 0.34337 0.39988 0.83595 1.38519 1.54238 1.56659 2.00925 2.06973 2.17794 2.20659 2.29555 2.53797 2.63188 2.67929 3.33450 3.48277 3.78527 3.91136 3.95282 3.98770 4.27121 4.44555 4.54277 4.60050 4.61916 4.65113 4.72196 4.89117 4.93472 4.99610 5.02731 5.06722 5.08024 5.32918 5.40011 5.61153 5.86723 5.97326 6.09803 6.35084 6.43059 6.55317 6.76606 7.13192 7.30587 7.68710 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.005384 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.142610 B = 5199.380977 C = 5951.823412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.638 5.638 3 C 0.089 3.911 4 C 0.169 3.831 5 C -0.057 4.057 6 C -0.148 4.148 7 C 0.290 3.710 8 N -0.625 5.625 9 C 0.352 3.648 10 C -0.359 4.359 11 H 0.121 0.879 12 C 0.043 3.957 13 N -0.727 5.727 14 Si 0.987 3.013 15 H -0.265 1.265 16 H -0.261 1.261 17 H -0.238 1.238 18 C -0.318 4.318 19 C 0.333 3.667 20 N -0.546 5.546 21 C 0.310 3.690 22 N -0.558 5.558 23 C -0.047 4.047 24 N 0.029 4.971 25 O -0.244 6.244 26 O -0.274 6.274 27 C -0.133 4.133 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.178 0.822 35 H 0.162 0.838 36 H 0.409 0.591 37 H 0.311 0.689 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 18.694 -6.587 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.352 5.352 3 C -0.053 4.053 4 C 0.065 3.935 5 C -0.080 4.080 6 C -0.171 4.171 7 C 0.176 3.824 8 N -0.258 5.258 9 C 0.248 3.752 10 C -0.386 4.386 11 H 0.139 0.861 12 C -0.188 4.188 13 N -0.345 5.345 14 Si 0.805 3.195 15 H -0.189 1.189 16 H -0.185 1.185 17 H -0.160 1.160 18 C -0.337 4.337 19 C 0.026 3.974 20 N -0.229 5.229 21 C 0.004 3.996 22 N -0.241 5.241 23 C -0.146 4.146 24 N 0.473 4.527 25 O -0.422 6.422 26 O -0.434 6.434 27 C -0.159 4.159 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.195 0.805 35 H 0.180 0.820 36 H 0.260 0.740 37 H 0.123 0.877 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.824 18.460 -5.434 20.106 hybrid contribution -0.776 -1.342 -0.748 1.721 sum -6.600 17.118 -6.182 19.360 Atomic orbital electron populations 1.21805 0.78588 1.03414 1.01691 1.46385 1.05559 1.02293 1.80999 1.21853 0.97768 0.83748 1.01917 1.17308 0.90984 0.85620 0.99571 1.21344 0.91763 0.99223 0.95658 1.21073 1.01917 0.88774 1.05298 1.17636 0.87270 0.88192 0.89345 1.43016 1.06020 1.07657 1.69150 1.16998 0.80064 0.88539 0.89603 1.20930 0.99982 1.26694 0.90986 0.86123 1.27347 0.94263 0.92461 1.04706 1.69382 1.09069 1.22776 1.33273 0.85026 0.79643 0.79939 0.74867 1.18921 1.18466 1.16041 1.12816 0.83758 1.37052 1.00069 1.24624 0.91097 0.90399 0.91274 1.81077 1.12264 1.17996 1.11551 1.25405 0.92144 0.90611 0.91444 1.81012 1.09857 1.18887 1.14327 1.19636 0.89048 0.81124 1.24830 1.50398 1.02545 1.04289 0.95499 1.96139 0.91066 1.96181 1.58764 1.95924 1.67117 1.18698 1.61663 1.20041 1.01050 0.88073 1.06735 0.93033 0.92384 0.88967 0.88681 0.92035 0.91942 0.80507 0.82032 0.74027 0.87672 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 10.16 127.77 1.30 2.47 16 2 N -0.64 -10.44 3.42 -747.06 -2.55 -12.99 16 3 C 0.09 0.83 9.40 127.77 1.20 2.03 16 4 C 0.17 3.88 6.56 38.16 0.25 4.13 16 5 C -0.06 -1.23 9.31 22.38 0.21 -1.03 16 6 C -0.15 -4.27 8.73 22.39 0.20 -4.08 16 7 C 0.29 10.45 4.91 38.15 0.19 10.64 16 8 N -0.62 -25.48 3.15 -179.65 -0.57 -26.05 16 9 C 0.35 14.09 4.95 39.06 0.19 14.29 16 10 C -0.36 -13.02 7.00 23.46 0.16 -12.86 16 11 H 0.12 4.24 7.05 -2.91 -0.02 4.22 16 12 C 0.04 1.45 5.17 85.88 0.44 1.89 16 13 N -0.73 -26.62 10.58 22.15 0.23 -26.38 16 14 Si 0.99 25.91 29.58 68.60 2.03 27.94 16 15 H -0.26 -7.37 7.11 99.48 0.71 -6.66 16 16 H -0.26 -6.58 7.11 99.48 0.71 -5.88 16 17 H -0.24 -5.91 7.11 99.48 0.71 -5.20 16 18 C -0.32 -13.69 5.87 -20.18 -0.12 -13.81 16 19 C 0.33 14.47 13.91 88.33 1.23 15.70 16 20 N -0.55 -24.42 18.54 19.01 0.35 -24.07 16 21 C 0.31 14.54 14.80 88.35 1.31 15.85 16 22 N -0.56 -27.73 18.53 18.99 0.35 -27.38 16 23 C -0.05 -1.74 6.89 36.49 0.25 -1.49 16 24 N 0.03 1.26 4.98 -46.19 -0.23 1.03 16 25 O -0.24 -10.57 19.17 3.52 0.07 -10.50 16 26 O -0.27 -13.06 16.33 3.51 0.06 -13.01 16 27 C -0.13 -3.91 8.74 22.38 0.20 -3.71 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.92 6.20 -2.38 -0.01 0.90 16 30 H 0.09 0.75 7.92 -2.39 -0.02 0.73 16 31 H 0.09 0.50 7.79 -2.39 -0.02 0.48 16 32 H 0.06 0.53 7.96 -2.39 -0.02 0.51 16 33 H 0.06 0.51 7.94 -2.39 -0.02 0.49 16 34 H 0.18 2.39 6.73 -2.91 -0.02 2.37 16 35 H 0.16 4.54 6.28 -2.91 -0.02 4.52 16 36 H 0.41 18.64 5.16 -102.83 -0.53 18.11 16 37 H 0.31 10.56 8.28 -92.71 -0.77 9.79 16 38 H 0.15 4.15 5.67 -2.91 -0.02 4.13 16 Total: -1.00 -59.58 347.12 7.39 -52.19 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.64 Total: 29.17 kcal Atomic # 6 Polarization: 23.04 SS G_CDS: 7.01 Total: 30.05 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -2.41 Total: -115.84 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.12 Total: -23.50 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: 2.03 Total: 27.94 kcal Total: -59.58 7.39 -52.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.804 kcal (2) G-P(sol) polarization free energy of solvation -59.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds